RNA–Protein interactions for RNA: ENST00000476903.1

CCDC88A-213, Transcript of coiled-coil domain containing 88A, humanhuman

TSL 3

Gene CCDC88A, Length 419 nt, Biotype processed transcript, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88A-213ENST00000476903 RNFT1Q5M7Z0 435 aa10.01□□□□□ -0.81
CCDC88A-213ENST00000476903 MAP4K5Q9Y4K4 846 aa10.01□□□□□ -0.81
CCDC88A-213ENST00000476903 ASXL1Q8IXJ9 1541 aa10.01□□□□□ -0.81
CCDC88A-213ENST00000476903 ADGRF5Q8IZF2 1346 aa10.01□□□□□ -0.81
CCDC88A-213ENST00000476903 JCADQ9P266 1359 aa10.01□□□□□ -0.81
CCDC88A-213ENST00000476903 MST1RQ04912 1400 aa10□□□□□ -0.81
CCDC88A-213ENST00000476903 KNDC1Q76NI1 1749 aa10□□□□□ -0.81
CCDC88A-213ENST00000476903 PRPF38BQ5VTL8 546 aaKnown RBP10□□□□□ -0.81
CCDC88A-213ENST00000476903 CABLES1Q8TDN4 633 aa10□□□□□ -0.81
CCDC88A-213ENST00000476903 TSEN34Q9BSV6 310 aaKnown RBP10□□□□□ -0.81
CCDC88A-213ENST00000476903 COL25A1Q9BXS0 654 aaPredicted RBP10□□□□□ -0.81
CCDC88A-213ENST00000476903 ZBTB3Q9H5J0 574 aa10□□□□□ -0.81
CCDC88A-213ENST00000476903 LAMC1P11047 1609 aa10□□□□□ -0.81
CCDC88A-213ENST00000476903 NHSL1Q5SYE7 1610 aa10□□□□□ -0.81
CCDC88A-213ENST00000476903 ROBO2Q9HCK4 1378 aa10□□□□□ -0.81
CCDC88A-213ENST00000476903 SHPRHQ149N8 1683 aa9.99□□□□□ -0.81
CCDC88A-213ENST00000476903 PIK3C2GO75747 1445 aa9.99□□□□□ -0.81
CCDC88A-213ENST00000476903 ZMYND10O75800 440 aa9.99□□□□□ -0.81
CCDC88A-213ENST00000476903 AGERQ15109 404 aa9.99□□□□□ -0.81
CCDC88A-213ENST00000476903 ZNF800Q2TB10 664 aaPredicted RBP eCLIP9.99□□□□□ -0.816e-6■□□□□ 8.6
CCDC88A-213ENST00000476903 BRINP3Q76B58 766 aa9.99□□□□□ -0.81
CCDC88A-213ENST00000476903 TRMT44Q8IYL2 757 aaKnown RBP9.99□□□□□ -0.81
CCDC88A-213ENST00000476903 FSHRP23945 695 aa9.98□□□□□ -0.81
CCDC88A-213ENST00000476903 SH3BP5LQ7L8J4 393 aa9.98□□□□□ -0.81
CCDC88A-213ENST00000476903 WHAMMQ8TF30 809 aa9.98□□□□□ -0.81
CCDC88A-213ENST00000476903 MYOM2P54296 1465 aa9.98□□□□□ -0.81
CCDC88A-213ENST00000476903 TTLL8A6PVC2 850 aa9.97□□□□□ -0.81
CCDC88A-213ENST00000476903 ARHGEF15O94989 841 aa9.97□□□□□ -0.81
CCDC88A-213ENST00000476903 TECPR2O15040 1411 aa9.97□□□□□ -0.81
CCDC88A-213ENST00000476903 NRXN1Q9ULB1 1477 aa9.97□□□□□ -0.81
CCDC88A-213ENST00000476903 CDC42BPGQ6DT37 1551 aa9.97□□□□□ -0.81
CCDC88A-213ENST00000476903 SLURP2P0DP57 97 aa9.96□□□□□ -0.82
CCDC88A-213ENST00000476903 DIXDC1Q155Q3 683 aa9.96□□□□□ -0.82
CCDC88A-213ENST00000476903 RIC3Q7Z5B4 369 aa9.96□□□□□ -0.82
CCDC88A-213ENST00000476903 EMILIN1Q9Y6C2 1016 aa9.96□□□□□ -0.82
CCDC88A-213ENST00000476903 SPATA31A6Q5VVP1 1343 aa9.96□□□□□ -0.82
CCDC88A-213ENST00000476903 LRPPRCP42704 1394 aaKnown RBP9.96□□□□□ -0.82
CCDC88A-213ENST00000476903 C1orf167Q5SNV9 1468 aa9.96□□□□□ -0.82
CCDC88A-213ENST00000476903 SLC35F4A4IF30 521 aa9.95□□□□□ -0.82
CCDC88A-213ENST00000476903 RNF225M0QZC1 329 aaPredicted RBP9.95□□□□□ -0.82
CCDC88A-213ENST00000476903 PARP9Q8IXQ6 854 aa9.95□□□□□ -0.82
CCDC88A-213ENST00000476903 CCDC155Q8N6L0 562 aa9.95□□□□□ -0.82
CCDC88A-213ENST00000476903 STK26Q9P289 416 aa9.95□□□□□ -0.82
CCDC88A-213ENST00000476903 YTHDC2Q9H6S0 1430 aaKnown RBP9.94□□□□□ -0.82
CCDC88A-213ENST00000476903 ABCC11Q96J66 1382 aa9.94□□□□□ -0.82
CCDC88A-213ENST00000476903 FIGNL2A6NMB9 653 aa9.94□□□□□ -0.82
CCDC88A-213ENST00000476903 Q6ZVU0 165 aa9.94□□□□□ -0.82
CCDC88A-213ENST00000476903 VASH1Q7L8A9 365 aaPredicted RBP9.94□□□□□ -0.82
CCDC88A-213ENST00000476903 CCDC116Q8IYX3 515 aa9.94□□□□□ -0.82
CCDC88A-213ENST00000476903 RGS17Q9UGC6 210 aaPredicted RBP9.94□□□□□ -0.82
CCDC88A-213ENST00000476903 LRP6O75581 1613 aa9.93□□□□□ -0.82
CCDC88A-213ENST00000476903 SPINT1O43278 529 aa9.93□□□□□ -0.82
CCDC88A-213ENST00000476903 CBLBQ13191 982 aa9.93□□□□□ -0.82
CCDC88A-213ENST00000476903 MEX3CQ5U5Q3 659 aaKnown RBP9.93□□□□□ -0.82
CCDC88A-213ENST00000476903 TMEM132EQ6IEE7 984 aa9.93□□□□□ -0.82
CCDC88A-213ENST00000476903 C14orf93Q9H972 538 aaKnown RBP9.93□□□□□ -0.82
CCDC88A-213ENST00000476903 DHX57Q6P158 1386 aaKnown RBP9.92□□□□□ -0.82
CCDC88A-213ENST00000476903 QPCTQ16769 361 aa9.92□□□□□ -0.82
CCDC88A-213ENST00000476903 WAPLQ7Z5K2 1190 aa9.92□□□□□ -0.82
CCDC88A-213ENST00000476903 ARMC2Q8NEN0 867 aa9.92□□□□□ -0.82
CCDC88A-213ENST00000476903 LRRC59Q96AG4 307 aaKnown RBP9.92□□□□□ -0.82
CCDC88A-213ENST00000476903 LIMD1Q9UGP4 676 aa9.92□□□□□ -0.82
CCDC88A-213ENST00000476903 FMN2Q9NZ56 1722 aa9.92□□□□□ -0.82
CCDC88A-213ENST00000476903 LILRB3O75022 631 aa9.91□□□□□ -0.82
CCDC88A-213ENST00000476903 CFAP70Q5T0N1 1121 aa9.91□□□□□ -0.82
CCDC88A-213ENST00000476903 DDX17Q92841 729 aaKnown RBP9.91□□□□□ -0.82
CCDC88A-213ENST00000476903 SIRT1Q96EB6 747 aa9.91□□□□□ -0.82
CCDC88A-213ENST00000476903 ORAI2Q96SN7 254 aa9.91□□□□□ -0.82
CCDC88A-213ENST00000476903 PLEKHH1Q9ULM0 1364 aa9.9□□□□□ -0.82
CCDC88A-213ENST00000476903 TUSC1Q2TAM9 212 aa9.9□□□□□ -0.82
CCDC88A-213ENST00000476903 PPP1R26Q5T8A7 1209 aaPredicted RBP9.9□□□□□ -0.82
CCDC88A-213ENST00000476903 POTEAQ6S8J7 498 aa9.9□□□□□ -0.82
CCDC88A-213ENST00000476903 SVOPQ8N4V2 548 aa9.9□□□□□ -0.82
CCDC88A-213ENST00000476903 DCAF11Q8TEB1 546 aa9.9□□□□□ -0.82
CCDC88A-213ENST00000476903 DNMT3AQ9Y6K1 912 aaPredicted RBP9.9□□□□□ -0.82
CCDC88A-213ENST00000476903 DLC1Q96QB1 1528 aa9.9□□□□□ -0.82
CCDC88A-213ENST00000476903 RGPD8O14715 1765 aaPredicted RBP9.9□□□□□ -0.82
CCDC88A-213ENST00000476903 KIF1AQ12756 1690 aa9.9□□□□□ -0.83
CCDC88A-213ENST00000476903 PNPLA6Q8IY17 1366 aa9.89□□□□□ -0.83
CCDC88A-213ENST00000476903 ADGRB1O14514 1584 aa9.89□□□□□ -0.83
CCDC88A-213ENST00000476903 NUTM2BA6NNL0 878 aaPredicted RBP9.89□□□□□ -0.83
CCDC88A-213ENST00000476903 NUTM2EB1AL46 878 aaPredicted RBP9.89□□□□□ -0.83
CCDC88A-213ENST00000476903 IRS1P35568 1242 aa9.89□□□□□ -0.83
CCDC88A-213ENST00000476903 CSPP1Q1MSJ5 1256 aa9.89□□□□□ -0.83
CCDC88A-213ENST00000476903 ERFEQ4G0M1 354 aa9.89□□□□□ -0.83
CCDC88A-213ENST00000476903 ESCO1Q5FWF5 840 aa9.89□□□□□ -0.83
CCDC88A-213ENST00000476903 NUTM2AQ8IVF1 878 aaPredicted RBP9.89□□□□□ -0.83
CCDC88A-213ENST00000476903 VWA5B2Q8N398 1253 aa9.89□□□□□ -0.83
CCDC88A-213ENST00000476903 ZC3H15Q8WU90 426 aaKnown RBP9.89□□□□□ -0.83
CCDC88A-213ENST00000476903 NPHP3Q7Z494 1330 aa9.88□□□□□ -0.83
CCDC88A-213ENST00000476903 ITGA6P23229 1130 aa9.88□□□□□ -0.83
CCDC88A-213ENST00000476903 NBPF14Q5TI25 921 aa9.88□□□□□ -0.83
CCDC88A-213ENST00000476903 ZNF772Q68DY9 489 aaPredicted RBP9.88□□□□□ -0.83
CCDC88A-213ENST00000476903 COL22A1Q8NFW1 1626 aaPredicted RBP9.88□□□□□ -0.83
CCDC88A-213ENST00000476903 PXDNQ92626 1479 aa9.87□□□□□ -0.83
CCDC88A-213ENST00000476903 MAGEB6P1A0A0J9YX57 407 aa9.87□□□□□ -0.83
CCDC88A-213ENST00000476903 TRIM66O15016 1216 aa9.87□□□□□ -0.83
CCDC88A-213ENST00000476903 MYSM1Q5VVJ2 828 aa9.87□□□□□ -0.83
CCDC88A-213ENST00000476903 GPAT2Q6NUI2 795 aa9.87□□□□□ -0.83
CCDC88A-213ENST00000476903 VSIG10Q8N0Z9 540 aa9.87□□□□□ -0.83
Retrieved 100 of 20,778 RNA–protein pairs in 52.1 ms