RNA–Protein interactions for RNA: ENST00000475375.1

VPS36-203, Transcript of vacuolar protein sorting 36 homolog, humanhuman

TSL 2

Gene VPS36, Length 754 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS36-203ENST00000475375 FER1L6Q2WGJ9 1857 aa27.47■■□□□ 1.99
VPS36-203ENST00000475375 SRGNP10124 158 aa27.47■■□□□ 1.99
VPS36-203ENST00000475375 KCNQ3O43525 872 aa27.46■■□□□ 1.99
VPS36-203ENST00000475375 PIP4K2AP48426 406 aaPredicted RBP27.46■■□□□ 1.99
VPS36-203ENST00000475375 MASTLQ96GX5 879 aa27.46■■□□□ 1.99
VPS36-203ENST00000475375 MKRN1Q9UHC7 482 aaKnown RBP27.46■■□□□ 1.99
VPS36-203ENST00000475375 DICER1Q9UPY3 1922 aaKnown RBP27.45■■□□□ 1.99
VPS36-203ENST00000475375 NBPF5PQ86XG9 351 aaPredicted RBP27.45■■□□□ 1.98
VPS36-203ENST00000475375 CREBZFQ9NS37 354 aa27.45■■□□□ 1.98
VPS36-203ENST00000475375 SIPA1L3O60292 1781 aaPredicted RBP27.45■■□□□ 1.98
VPS36-203ENST00000475375 POTEIP0CG38 1075 aa27.44■■□□□ 1.98
VPS36-203ENST00000475375 POTEJP0CG39 1038 aa27.44■■□□□ 1.98
VPS36-203ENST00000475375 SLX4Q8IY92 1834 aa27.44■■□□□ 1.98
VPS36-203ENST00000475375 PRKAR2BP31323 418 aa27.43■■□□□ 1.98
VPS36-203ENST00000475375 CEMIPQ8WUJ3 1361 aa27.43■■□□□ 1.98
VPS36-203ENST00000475375 PHACTR3Q96KR7 559 aa27.42■■□□□ 1.98
VPS36-203ENST00000475375 USP16Q9Y5T5 823 aa27.42■■□□□ 1.98
VPS36-203ENST00000475375 CACNA1SQ13698 1873 aa27.42■■□□□ 1.98
VPS36-203ENST00000475375 ZNF652Q9Y2D9 606 aa27.41■■□□□ 1.98
VPS36-203ENST00000475375 NPC1L1Q9UHC9 1359 aa27.4■■□□□ 1.98
VPS36-203ENST00000475375 IQCA1LA6NCM1 817 aa27.4■■□□□ 1.98
VPS36-203ENST00000475375 CCDC93Q567U6 631 aa27.4■■□□□ 1.98
VPS36-203ENST00000475375 CFAP53Q96M91 514 aa27.4■■□□□ 1.98
VPS36-203ENST00000475375 BCORQ6W2J9 1755 aa27.38■■□□□ 1.97
VPS36-203ENST00000475375 PRAMEF22A3QJZ6 481 aa27.38■■□□□ 1.97
VPS36-203ENST00000475375 CLEC4GQ6UXB4 293 aa27.38■■□□□ 1.97
VPS36-203ENST00000475375 RTF1Q92541 710 aaKnown RBP27.38■■□□□ 1.97
VPS36-203ENST00000475375 SNRPA1P09661 255 aaKnown RBP27.37■■□□□ 1.97
VPS36-203ENST00000475375 NPR1P16066 1061 aa27.37■■□□□ 1.97
VPS36-203ENST00000475375 LDHDQ86WU2 507 aa27.37■■□□□ 1.97
VPS36-203ENST00000475375 RSPH6AQ9H0K4 717 aa27.37■■□□□ 1.97
VPS36-203ENST00000475375 FAM177BA6PVY3 158 aa27.36■■□□□ 1.97
VPS36-203ENST00000475375 NUDCQ9Y266 331 aa27.36■■□□□ 1.97
VPS36-203ENST00000475375 EAPPQ56P03 285 aaPredicted RBP27.35■■□□□ 1.97
VPS36-203ENST00000475375 TPTE2Q6XPS3 522 aa27.35■■□□□ 1.97
VPS36-203ENST00000475375 MCM10Q7L590 875 aa27.35■■□□□ 1.97
VPS36-203ENST00000475375 TAF1DQ9H5J8 278 aaPredicted RBP27.35■■□□□ 1.97
VPS36-203ENST00000475375 ZNF277Q9NRM2 450 aaPredicted RBP27.35■■□□□ 1.97
VPS36-203ENST00000475375 NIP7Q9Y221 180 aaKnown RBP eCLIP27.35■■□□□ 1.97
VPS36-203ENST00000475375 ARFGEF2Q9Y6D5 1785 aa27.35■■□□□ 1.97
VPS36-203ENST00000475375 FKBP4Q02790 459 aaKnown RBP eCLIP27.34■■□□□ 1.97
VPS36-203ENST00000475375 C7orf43Q8WVR3 580 aa27.34■■□□□ 1.97
VPS36-203ENST00000475375 L3MBTL3Q96JM7 780 aaPredicted RBP27.34■■□□□ 1.97
VPS36-203ENST00000475375 CNTNAP1P78357 1384 aa27.33■■□□□ 1.97
VPS36-203ENST00000475375 U2AF1L5P0DN76 240 aaPredicted RBP27.32■■□□□ 1.96
VPS36-203ENST00000475375 U2AF1Q01081 240 aaKnown RBP eCLIP27.32■■□□□ 1.96
VPS36-203ENST00000475375 CLEC11AQ9Y240 323 aa27.32■■□□□ 1.96
VPS36-203ENST00000475375 ZNF541Q9H0D2 1346 aa27.32■■□□□ 1.96
VPS36-203ENST00000475375 GTF2E1P29083 439 aaPredicted RBP27.31■■□□□ 1.96
VPS36-203ENST00000475375 OLFM4Q6UX06 510 aa27.31■■□□□ 1.96
VPS36-203ENST00000475375 RTKN2Q8IZC4 609 aa27.31■■□□□ 1.96
VPS36-203ENST00000475375 PASKQ96RG2 1323 aa27.31■■□□□ 1.96
VPS36-203ENST00000475375 AIDAQ96BJ3 306 aa27.3■■□□□ 1.96
VPS36-203ENST00000475375 HACL1Q9UJ83 578 aa27.3■■□□□ 1.96
VPS36-203ENST00000475375 TMEM88BA6NKF7 163 aa27.29■■□□□ 1.96
VPS36-203ENST00000475375 NBPF26B4DH59 902 aa27.29■■□□□ 1.96
VPS36-203ENST00000475375 FOXN1O15353 648 aa27.29■■□□□ 1.96
VPS36-203ENST00000475375 DCTN1Q14203 1278 aa27.29■■□□□ 1.96
VPS36-203ENST00000475375 NBPF10Q6P3W6 841 aaKnown RBP27.29■■□□□ 1.96
VPS36-203ENST00000475375 NBPF15Q8N660 670 aa27.29■■□□□ 1.96
VPS36-203ENST00000475375 SCN4AP35499 1836 aa27.28■■□□□ 1.96
VPS36-203ENST00000475375 KLRG2A4D1S0 409 aaPredicted RBP27.28■■□□□ 1.96
VPS36-203ENST00000475375 ALDH1B1P30837 517 aa27.26■■□□□ 1.95
VPS36-203ENST00000475375 EPHX2P34913 555 aa27.26■■□□□ 1.95
VPS36-203ENST00000475375 VEGFBP49765 207 aa27.26■■□□□ 1.95
VPS36-203ENST00000475375 IARSP41252 1262 aaKnown RBP27.25■■□□□ 1.95
VPS36-203ENST00000475375 HLFQ16534 295 aa27.25■■□□□ 1.95
VPS36-203ENST00000475375 SYNE4Q8N205 404 aa27.25■■□□□ 1.95
VPS36-203ENST00000475375 RNF123Q5XPI4 1314 aa27.24■■□□□ 1.95
VPS36-203ENST00000475375 RGL2O15211 777 aa27.24■■□□□ 1.95
VPS36-203ENST00000475375 ITGBL1O95965 494 aaPredicted RBP27.24■■□□□ 1.95
VPS36-203ENST00000475375 PNMA8AQ86V59 439 aaPredicted RBP27.24■■□□□ 1.95
VPS36-203ENST00000475375 NGEFQ8N5V2 710 aa27.24■■□□□ 1.95
VPS36-203ENST00000475375 CTCFP49711 727 aaPredicted RBP27.23■■□□□ 1.95
VPS36-203ENST00000475375 MIS18AQ9NYP9 233 aa27.23■■□□□ 1.95
VPS36-203ENST00000475375 HTATSF1O43719 755 aaKnown RBP27.22■■□□□ 1.95
VPS36-203ENST00000475375 TAF7Q15545 349 aaPredicted RBP27.22■■□□□ 1.95
VPS36-203ENST00000475375 JDP2Q8WYK2 163 aa27.22■■□□□ 1.95
VPS36-203ENST00000475375 PRDM10Q9NQV6 1147 aa27.22■■□□□ 1.95
VPS36-203ENST00000475375 CNTROBQ8N137 903 aa27.21■■□□□ 1.95
VPS36-203ENST00000475375 FZD9O00144 591 aa27.2■■□□□ 1.94
VPS36-203ENST00000475375 PPP2R1AP30153 589 aa27.2■■□□□ 1.94
VPS36-203ENST00000475375 MAP1SQ66K74 1059 aaPredicted RBP27.2■■□□□ 1.94
VPS36-203ENST00000475375 GPC2Q8N158 579 aa27.2■■□□□ 1.94
VPS36-203ENST00000475375 NYXQ9GZU5 481 aa27.2■■□□□ 1.94
VPS36-203ENST00000475375 NUTM1Q86Y26 1132 aa27.19■■□□□ 1.94
VPS36-203ENST00000475375 GJA3Q9Y6H8 435 aa27.19■■□□□ 1.94
VPS36-203ENST00000475375 RPGRQ92834 1020 aaKnown RBP27.18■■□□□ 1.94
VPS36-203ENST00000475375 EIF6P56537 245 aaKnown RBP27.17■■□□□ 1.94
VPS36-203ENST00000475375 DEFB115Q30KQ5 88 aa27.17■■□□□ 1.94
VPS36-203ENST00000475375 PSMD1Q99460 953 aa27.17■■□□□ 1.94
VPS36-203ENST00000475375 ABT1Q9ULW3 272 aaKnown RBP27.17■■□□□ 1.94
VPS36-203ENST00000475375 ABCC12Q96J65 1359 aa27.17■■□□□ 1.94
VPS36-203ENST00000475375 NEFMP07197 916 aa27.16■■□□□ 1.94
VPS36-203ENST00000475375 LMOD1P29536 600 aaPredicted RBP27.16■■□□□ 1.94
VPS36-203ENST00000475375 KIF6Q6ZMV9 814 aa27.16■■□□□ 1.94
VPS36-203ENST00000475375 RRP7AQ9Y3A4 280 aaKnown RBP27.16■■□□□ 1.94
VPS36-203ENST00000475375 LBX1P52954 281 aa27.15■■□□□ 1.94
VPS36-203ENST00000475375 CRY2Q49AN0 593 aa27.15■■□□□ 1.94
VPS36-203ENST00000475375 WBP1LQ9NX94 342 aa27.15■■□□□ 1.94
Retrieved 100 of 20,778 RNA–protein pairs in 28.6 ms