RNA–Protein interactions for RNA: ENST00000475243.5

VAPB-204, Transcript of VAMP associated protein B and C, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene VAPB, Length 7,936 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VAPB-204ENST00000475243 RAB34Q9BZG1 259 aa12.7□□□□□ -0.38
VAPB-204ENST00000475243 DBF4Q9UBU7 674 aaPredicted RBP12.7□□□□□ -0.38
VAPB-204ENST00000475243 ZNF622Q969S3 477 aaKnown RBP eCLIP12.7□□□□□ -0.381e-11■□□□□ 9.6
VAPB-204ENST00000475243 HMGB1P09429 215 aaKnown RBP12.69□□□□□ -0.38
VAPB-204ENST00000475243 TCERG1LQ5VWI1 586 aa12.69□□□□□ -0.38
VAPB-204ENST00000475243 MMRN2Q9H8L6 949 aa12.69□□□□□ -0.38
VAPB-204ENST00000475243 LIMCH1Q9UPQ0 1083 aa12.69□□□□□ -0.38
VAPB-204ENST00000475243 SPDYE4A6NLX3 237 aa12.69□□□□□ -0.38
VAPB-204ENST00000475243 LUZP1Q86V48 1076 aa12.69□□□□□ -0.38
VAPB-204ENST00000475243 PHF8Q9UPP1 1060 aa12.69□□□□□ -0.38
VAPB-204ENST00000475243 TSPY2A6NKD2 308 aa12.69□□□□□ -0.38
VAPB-204ENST00000475243 GJB2P29033 226 aa12.69□□□□□ -0.38
VAPB-204ENST00000475243 FLIIQ13045 1269 aa12.69□□□□□ -0.38
VAPB-204ENST00000475243 CCDC150Q8NCX0 1101 aa12.69□□□□□ -0.38
VAPB-204ENST00000475243 SCAND2PQ9GZW5 306 aaPredicted RBP12.69□□□□□ -0.38
VAPB-204ENST00000475243 CC2D2AQ9P2K1 1620 aa12.69□□□□□ -0.38
VAPB-204ENST00000475243 TRIM27P14373 513 aa12.69□□□□□ -0.38
VAPB-204ENST00000475243 PDCL2Q8N4E4 241 aa12.69□□□□□ -0.38
VAPB-204ENST00000475243 CHRNA2Q15822 529 aa12.69□□□□□ -0.38
VAPB-204ENST00000475243 KRT28Q7Z3Y7 464 aa12.69□□□□□ -0.38
VAPB-204ENST00000475243 NAIPQ13075 1403 aa12.68□□□□□ -0.38
VAPB-204ENST00000475243 MTIF2P46199 727 aaKnown RBP12.68□□□□□ -0.38
VAPB-204ENST00000475243 SH2B1Q9NRF2 756 aaPredicted RBP12.68□□□□□ -0.38
VAPB-204ENST00000475243 PTPN23Q9H3S7 1636 aa12.68□□□□□ -0.38
VAPB-204ENST00000475243 TMCO3Q6UWJ1 677 aa12.68□□□□□ -0.38
VAPB-204ENST00000475243 IFFO1Q0D2I5 559 aa12.68□□□□□ -0.38
VAPB-204ENST00000475243 TMEM87AQ8NBN3 555 aa12.68□□□□□ -0.38
VAPB-204ENST00000475243 IDEP14735 1019 aa12.68□□□□□ -0.38
VAPB-204ENST00000475243 VPS36Q86VN1 386 aa12.68□□□□□ -0.38
VAPB-204ENST00000475243 USP16Q9Y5T5 823 aa12.68□□□□□ -0.38
VAPB-204ENST00000475243 CWC25Q9NXE8 425 aaPredicted RBP12.68□□□□□ -0.38
VAPB-204ENST00000475243 FGFR1OPO95684 399 aaKnown RBP12.68□□□□□ -0.38
VAPB-204ENST00000475243 PRPF4BQ13523 1007 aaKnown RBP12.68□□□□□ -0.38
VAPB-204ENST00000475243 RNF41Q9H4P4 317 aaPredicted RBP12.68□□□□□ -0.38
VAPB-204ENST00000475243 PUF60Q9UHX1 559 aaKnown RBP12.68□□□□□ -0.38
VAPB-204ENST00000475243 PI4KAP2A4QPH2 592 aa12.67□□□□□ -0.38
VAPB-204ENST00000475243 UBE4AQ14139 1066 aa12.67□□□□□ -0.38
VAPB-204ENST00000475243 PI4KAP1Q8N8J0 262 aa12.67□□□□□ -0.38
VAPB-204ENST00000475243 KIF18AQ8NI77 898 aa12.67□□□□□ -0.38
VAPB-204ENST00000475243 USP25Q9UHP3 1055 aa12.67□□□□□ -0.38
VAPB-204ENST00000475243 ZSCAN12O43309 604 aa12.67□□□□□ -0.38
VAPB-204ENST00000475243 SYCP3Q8IZU3 236 aa12.67□□□□□ -0.38
VAPB-204ENST00000475243 EVI5LQ96CN4 794 aa12.67□□□□□ -0.38
VAPB-204ENST00000475243 SLC26A6Q9BXS9 759 aa12.67□□□□□ -0.38
VAPB-204ENST00000475243 TOPBP1Q92547 1522 aa12.67□□□□□ -0.38
VAPB-204ENST00000475243 FAM135AQ9P2D6 1515 aa12.67□□□□□ -0.38
VAPB-204ENST00000475243 WASLO00401 505 aaPredicted RBP12.67□□□□□ -0.38
VAPB-204ENST00000475243 TTC16Q8NEE8 873 aa12.67□□□□□ -0.38
VAPB-204ENST00000475243 PDIA4P13667 645 aaKnown RBP12.67□□□□□ -0.38
VAPB-204ENST00000475243 CTNNA2P26232 953 aa12.67□□□□□ -0.38
VAPB-204ENST00000475243 CCDC91Q7Z6B0 441 aa12.67□□□□□ -0.38
VAPB-204ENST00000475243 CBX1P83916 185 aa12.67□□□□□ -0.38
VAPB-204ENST00000475243 DDX46Q7L014 1031 aaKnown RBP12.67□□□□□ -0.38
VAPB-204ENST00000475243 C16orf45Q96MC5 204 aaPredicted RBP12.67□□□□□ -0.38
VAPB-204ENST00000475243 IFT140Q96RY7 1462 aa12.67□□□□□ -0.38
VAPB-204ENST00000475243 POLR3GO15318 223 aaPredicted RBP12.67□□□□□ -0.38
VAPB-204ENST00000475243 RFC4P35249 363 aa12.67□□□□□ -0.38
VAPB-204ENST00000475243 SLF2Q8IX21 1173 aa12.67□□□□□ -0.38
VAPB-204ENST00000475243 ADGRF5Q8IZF2 1346 aa12.67□□□□□ -0.38
VAPB-204ENST00000475243 TMCO5BA8MYB1 307 aa12.66□□□□□ -0.38
VAPB-204ENST00000475243 BAG4O95429 457 aaKnown RBP12.66□□□□□ -0.38
VAPB-204ENST00000475243 NOP2P46087 812 aaKnown RBP12.66□□□□□ -0.38
VAPB-204ENST00000475243 TBC1D9Q6ZT07 1266 aa12.66□□□□□ -0.38
VAPB-204ENST00000475243 CALML4Q96GE6 196 aa12.66□□□□□ -0.38
VAPB-204ENST00000475243 PRDM10Q9NQV6 1147 aa12.66□□□□□ -0.38
VAPB-204ENST00000475243 TMC6Q7Z403 805 aa12.66□□□□□ -0.38
VAPB-204ENST00000475243 PPP1R42Q7Z4L9 355 aa12.66□□□□□ -0.38
VAPB-204ENST00000475243 PHAXQ9H814 394 aaKnown RBP12.66□□□□□ -0.38
VAPB-204ENST00000475243 KAT14Q9H8E8 782 aa12.66□□□□□ -0.38
VAPB-204ENST00000475243 RBM27Q9P2N5 1060 aaKnown RBP12.66□□□□□ -0.38
VAPB-204ENST00000475243 WWC3Q9ULE0 1092 aa12.66□□□□□ -0.38
VAPB-204ENST00000475243 IQSEC3Q9UPP2 1182 aaPredicted RBP12.66□□□□□ -0.38
VAPB-204ENST00000475243 MFSD6Q6ZSS7 791 aa12.66□□□□□ -0.38
VAPB-204ENST00000475243 TNPO1Q92973 898 aaKnown RBP12.66□□□□□ -0.38
VAPB-204ENST00000475243 ACSBG1Q96GR2 724 aa12.66□□□□□ -0.38
VAPB-204ENST00000475243 DNAI2Q9GZS0 605 aa12.66□□□□□ -0.38
VAPB-204ENST00000475243 F8W031 263 aaPredicted RBP12.66□□□□□ -0.38
VAPB-204ENST00000475243 WDHD1O75717 1129 aaPredicted RBP12.66□□□□□ -0.38
VAPB-204ENST00000475243 FERMT2Q96AC1 680 aa12.66□□□□□ -0.38
VAPB-204ENST00000475243 TCP11L1Q9NUJ3 509 aa12.66□□□□□ -0.38
VAPB-204ENST00000475243 LRRC2Q9BYS8 371 aa12.66□□□□□ -0.38
VAPB-204ENST00000475243 ECM2O94769 699 aaPredicted RBP12.65□□□□□ -0.38
VAPB-204ENST00000475243 IARSP41252 1262 aaKnown RBP12.65□□□□□ -0.38
VAPB-204ENST00000475243 STX8Q9UNK0 236 aa12.65□□□□□ -0.38
VAPB-204ENST00000475243 NCAPD3P42695 1498 aa12.65□□□□□ -0.38
VAPB-204ENST00000475243 METAP2P50579 478 aaKnown RBP eCLIP12.65□□□□□ -0.38
VAPB-204ENST00000475243 TBC1D2Q9BYX2 928 aa12.65□□□□□ -0.38
VAPB-204ENST00000475243 ZSCAN30Q86W11 494 aa12.65□□□□□ -0.38
VAPB-204ENST00000475243 CD109Q6YHK3 1445 aa12.65□□□□□ -0.38
VAPB-204ENST00000475243 HLTFQ14527 1009 aaKnown RBP eCLIP12.65□□□□□ -0.38
VAPB-204ENST00000475243 CDC5LQ99459 802 aaKnown RBP12.65□□□□□ -0.38
VAPB-204ENST00000475243 PTPRCP08575 1304 aa12.65□□□□□ -0.38
VAPB-204ENST00000475243 TOP2BQ02880 1626 aa12.65□□□□□ -0.38
VAPB-204ENST00000475243 PRC1O43663 620 aa12.65□□□□□ -0.38
VAPB-204ENST00000475243 USO1O60763 962 aaKnown RBP12.65□□□□□ -0.39
VAPB-204ENST00000475243 CCDC40Q4G0X9 1142 aa12.65□□□□□ -0.39
VAPB-204ENST00000475243 HSP90AA4PQ58FG1 418 aa12.65□□□□□ -0.39
VAPB-204ENST00000475243 KIF14Q15058 1648 aa12.64□□□□□ -0.39
VAPB-204ENST00000475243 POLA1P09884 1462 aaPredicted RBP12.64□□□□□ -0.39
VAPB-204ENST00000475243 PAFAH1B1P43034 410 aa12.64□□□□□ -0.39
Retrieved 100 of 20,778 RNA–protein pairs in 19.7 ms