RNA–Protein interactions for RNA: ENST00000472308.1

SHH-205, Transcript of sonic hedgehog, humanhuman

TSL 1 (best)

Gene SHH, Length 504 nt, Biotype processed transcript, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHH-205ENST00000472308 BCORQ6W2J9 1755 aa24.99■■□□□ 1.59
SHH-205ENST00000472308 ZNF541Q9H0D2 1346 aa24.98■■□□□ 1.59
SHH-205ENST00000472308 TMEM88BA6NKF7 163 aa24.98■■□□□ 1.59
SHH-205ENST00000472308 SOGA3Q5TF21 947 aa24.98■■□□□ 1.59
SHH-205ENST00000472308 MASTLQ96GX5 879 aa24.98■■□□□ 1.59
SHH-205ENST00000472308 SETDB2Q96T68 719 aa24.98■■□□□ 1.59
SHH-205ENST00000472308 WBP1LQ9NX94 342 aa24.98■■□□□ 1.59
SHH-205ENST00000472308 A1BGP04217 495 aa24.97■■□□□ 1.59
SHH-205ENST00000472308 IL17REQ8NFR9 667 aa24.97■■□□□ 1.59
SHH-205ENST00000472308 AIDAQ96BJ3 306 aa24.97■■□□□ 1.59
SHH-205ENST00000472308 ST5P78524 1137 aa24.96■■□□□ 1.59
SHH-205ENST00000472308 TEX13AQ9BXU3 409 aaPredicted RBP24.96■■□□□ 1.59
SHH-205ENST00000472308 LBX1P52954 281 aa24.95■■□□□ 1.58
SHH-205ENST00000472308 DIAPH1O60610 1272 aaKnown RBP24.94■■□□□ 1.58
SHH-205ENST00000472308 SLC34A2O95436 690 aa24.94■■□□□ 1.58
SHH-205ENST00000472308 EAPPQ56P03 285 aaPredicted RBP24.94■■□□□ 1.58
SHH-205ENST00000472308 NPHP1O15259 732 aa24.93■■□□□ 1.58
SHH-205ENST00000472308 TEFQ10587 303 aa24.93■■□□□ 1.58
SHH-205ENST00000472308 CCDC93Q567U6 631 aa24.93■■□□□ 1.58
SHH-205ENST00000472308 COL3A1P02461 1466 aaPredicted RBP24.92■■□□□ 1.58
SHH-205ENST00000472308 OLFM4Q6UX06 510 aa24.92■■□□□ 1.58
SHH-205ENST00000472308 ZNF277Q9NRM2 450 aaPredicted RBP24.92■■□□□ 1.58
SHH-205ENST00000472308 RASSF10A6NK89 507 aa24.91■■□□□ 1.58
SHH-205ENST00000472308 HSPA8P11142 646 aaKnown RBP24.91■■□□□ 1.58
SHH-205ENST00000472308 FKBP4Q02790 459 aaKnown RBP eCLIP24.91■■□□□ 1.58
SHH-205ENST00000472308 DZIP3Q86Y13 1208 aaKnown RBP24.91■■□□□ 1.58
SHH-205ENST00000472308 FMNL2Q96PY5 1086 aa24.91■■□□□ 1.58
SHH-205ENST00000472308 HACL1Q9UJ83 578 aa24.91■■□□□ 1.58
SHH-205ENST00000472308 KCNQ3O43525 872 aa24.9■■□□□ 1.58
SHH-205ENST00000472308 EPHX2P34913 555 aa24.9■■□□□ 1.58
SHH-205ENST00000472308 KLRG2A4D1S0 409 aaPredicted RBP24.89■■□□□ 1.58
SHH-205ENST00000472308 GNAT3A8MTJ3 354 aa24.89■■□□□ 1.58
SHH-205ENST00000472308 PIP4K2AP48426 406 aaPredicted RBP24.89■■□□□ 1.58
SHH-205ENST00000472308 ABHD8Q96I13 439 aa24.89■■□□□ 1.58
SHH-205ENST00000472308 CEMIPQ8WUJ3 1361 aa24.89■■□□□ 1.57
SHH-205ENST00000472308 RNF123Q5XPI4 1314 aa24.88■■□□□ 1.57
SHH-205ENST00000472308 NPR1P16066 1061 aa24.88■■□□□ 1.57
SHH-205ENST00000472308 MAP1SQ66K74 1059 aaPredicted RBP24.88■■□□□ 1.57
SHH-205ENST00000472308 NBPF5PQ86XG9 351 aaPredicted RBP24.88■■□□□ 1.57
SHH-205ENST00000472308 CLEC11AQ9Y240 323 aa24.88■■□□□ 1.57
SHH-205ENST00000472308 CNTROBQ8N137 903 aa24.87■■□□□ 1.57
SHH-205ENST00000472308 CLSPNQ9HAW4 1339 aa24.86■■□□□ 1.57
SHH-205ENST00000472308 SNED1Q8TER0 1413 aa24.86■■□□□ 1.57
SHH-205ENST00000472308 FZD9O00144 591 aa24.86■■□□□ 1.57
SHH-205ENST00000472308 DEFB115Q30KQ5 88 aa24.86■■□□□ 1.57
SHH-205ENST00000472308 FAM161AQ3B820 660 aa24.86■■□□□ 1.57
SHH-205ENST00000472308 NPM2Q86SE8 214 aaKnown RBP24.86■■□□□ 1.57
SHH-205ENST00000472308 GAS2L2Q8NHY3 880 aa24.86■■□□□ 1.57
SHH-205ENST00000472308 USP16Q9Y5T5 823 aa24.86■■□□□ 1.57
SHH-205ENST00000472308 THSD7BQ9C0I4 1608 aa24.86■■□□□ 1.57
SHH-205ENST00000472308 WDR33Q9C0J8 1336 aaKnown RBP24.86■■□□□ 1.57
SHH-205ENST00000472308 PRAMEF22A3QJZ6 481 aa24.85■■□□□ 1.57
SHH-205ENST00000472308 CLEC4GQ6UXB4 293 aa24.85■■□□□ 1.57
SHH-205ENST00000472308 TRIM26Q12899 539 aaPredicted RBP24.84■■□□□ 1.57
SHH-205ENST00000472308 PNMA8AQ86V59 439 aaPredicted RBP24.84■■□□□ 1.57
SHH-205ENST00000472308 COL4A5P29400 1685 aa24.83■■□□□ 1.57
SHH-205ENST00000472308 PER1O15534 1290 aaPredicted RBP24.83■■□□□ 1.57
SHH-205ENST00000472308 IARSP41252 1262 aaKnown RBP24.83■■□□□ 1.57
SHH-205ENST00000472308 RTKN2Q8IZC4 609 aa24.83■■□□□ 1.57
SHH-205ENST00000472308 LTBP1Q14766 1721 aa24.83■■□□□ 1.57
SHH-205ENST00000472308 BTBD11A6QL63 1104 aa24.82■■□□□ 1.56
SHH-205ENST00000472308 MAP2K1Q02750 393 aaPredicted RBP24.82■■□□□ 1.56
SHH-205ENST00000472308 U2SURPO15042 1029 aaKnown RBP24.81■■□□□ 1.56
SHH-205ENST00000472308 CC2D1BQ5T0F9 858 aaKnown RBP24.81■■□□□ 1.56
SHH-205ENST00000472308 GPC2Q8N158 579 aa24.81■■□□□ 1.56
SHH-205ENST00000472308 ZNF652Q9Y2D9 606 aa24.81■■□□□ 1.56
SHH-205ENST00000472308 KIF7Q2M1P5 1343 aa24.81■■□□□ 1.56
SHH-205ENST00000472308 SYNE4Q8N205 404 aa24.8■■□□□ 1.56
SHH-205ENST00000472308 DDX21Q9NR30 783 aaKnown RBP eCLIP24.8■■□□□ 1.56
SHH-205ENST00000472308 ABT1Q9ULW3 272 aaKnown RBP24.8■■□□□ 1.56
SHH-205ENST00000472308 PHACTR3Q96KR7 559 aa24.79■■□□□ 1.56
SHH-205ENST00000472308 NIP7Q9Y221 180 aaKnown RBP eCLIP24.79■■□□□ 1.56
SHH-205ENST00000472308 NBPF26B4DH59 902 aa24.78■■□□□ 1.56
SHH-205ENST00000472308 FMR1Q06787 632 aaKnown RBP eCLIP24.78■■□□□ 1.56
SHH-205ENST00000472308 NBPF10Q6P3W6 841 aaKnown RBP24.78■■□□□ 1.56
SHH-205ENST00000472308 TPTE2Q6XPS3 522 aa24.78■■□□□ 1.56
SHH-205ENST00000472308 NBPF15Q8N660 670 aa24.78■■□□□ 1.56
SHH-205ENST00000472308 PSMD1Q99460 953 aa24.77■■□□□ 1.56
SHH-205ENST00000472308 FAM177BA6PVY3 158 aa24.76■■□□□ 1.55
SHH-205ENST00000472308 RGL2O15211 777 aa24.76■■□□□ 1.55
SHH-205ENST00000472308 CAPNS2Q96L46 248 aa24.75■■□□□ 1.55
SHH-205ENST00000472308 ABCC12Q96J65 1359 aa24.75■■□□□ 1.55
SHH-205ENST00000472308 SNRPA1P09661 255 aaKnown RBP24.74■■□□□ 1.55
SHH-205ENST00000472308 ALDH1B1P30837 517 aa24.74■■□□□ 1.55
SHH-205ENST00000472308 SCNN1DP51172 638 aa24.74■■□□□ 1.55
SHH-205ENST00000472308 HLFQ16534 295 aa24.74■■□□□ 1.55
SHH-205ENST00000472308 CRY2Q49AN0 593 aa24.74■■□□□ 1.55
SHH-205ENST00000472308 SLC51AQ86UW1 340 aa24.73■■□□□ 1.55
SHH-205ENST00000472308 GJA3Q9Y6H8 435 aa24.73■■□□□ 1.55
SHH-205ENST00000472308 PRKAR2BP31323 418 aa24.72■■□□□ 1.55
SHH-205ENST00000472308 CYP4F22Q6NT55 531 aa24.72■■□□□ 1.55
SHH-205ENST00000472308 JDP2Q8WYK2 163 aa24.72■■□□□ 1.55
SHH-205ENST00000472308 RSPH6AQ9H0K4 717 aa24.72■■□□□ 1.55
SHH-205ENST00000472308 EPS15P42566 896 aa24.71■■□□□ 1.55
SHH-205ENST00000472308 RGS19P49795 217 aa24.71■■□□□ 1.55
SHH-205ENST00000472308 CST9Q5W186 159 aa24.71■■□□□ 1.55
SHH-205ENST00000472308 PCGF6Q9BYE7 350 aa24.71■■□□□ 1.55
SHH-205ENST00000472308 CCDC85CA6NKD9 419 aa24.7■■□□□ 1.54
SHH-205ENST00000472308 TRAF5O00463 557 aa24.7■■□□□ 1.54
SHH-205ENST00000472308 GPR101Q96P66 508 aaPredicted RBP24.7■■□□□ 1.54
Retrieved 100 of 20,778 RNA–protein pairs in 33.3 ms