RNA–Protein interactions for RNA: ENST00000470588.1

SMARCD3-206, Transcript of SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily d, member 3, humanhuman

TSL 2

Gene SMARCD3, Length 1,755 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMARCD3-206ENST00000470588 USP16Q9Y5T5 823 aa20.85■□□□□ 0.93
SMARCD3-206ENST00000470588 HSPA1LP34931 641 aa20.85■□□□□ 0.93
SMARCD3-206ENST00000470588 AIMP1Q12904 312 aaKnown RBP20.85■□□□□ 0.93
SMARCD3-206ENST00000470588 VPS72Q15906 364 aa20.85■□□□□ 0.93
SMARCD3-206ENST00000470588 AOX1Q06278 1338 aa20.84■□□□□ 0.93
SMARCD3-206ENST00000470588 MX1P20591 662 aa20.84■□□□□ 0.93
SMARCD3-206ENST00000470588 SNX21Q969T3 373 aa20.84■□□□□ 0.93
SMARCD3-206ENST00000470588 COPS6Q7L5N1 327 aa20.83■□□□□ 0.93
SMARCD3-206ENST00000470588 XAGE3Q8WTP9 111 aa20.83■□□□□ 0.93
SMARCD3-206ENST00000470588 KIF1BPQ96EK5 621 aa20.83■□□□□ 0.93
SMARCD3-206ENST00000470588 KCPQ6ZWJ8 1503 aa20.83■□□□□ 0.92
SMARCD3-206ENST00000470588 GRM8O00222 908 aa20.82■□□□□ 0.92
SMARCD3-206ENST00000470588 MYL6BP14649 208 aa20.82■□□□□ 0.92
SMARCD3-206ENST00000470588 NEXNQ0ZGT2 675 aa20.82■□□□□ 0.92
SMARCD3-206ENST00000470588 FNBP4Q8N3X1 1017 aaPredicted RBP20.82■□□□□ 0.92
SMARCD3-206ENST00000470588 DOT1LQ8TEK3 1739 aa20.82■□□□□ 0.92
SMARCD3-206ENST00000470588 BCL9LQ86UU0 1499 aa20.82■□□□□ 0.92
SMARCD3-206ENST00000470588 ERBB4Q15303 1308 aa20.82■□□□□ 0.92
SMARCD3-206ENST00000470588 GLI3P10071 1580 aa20.82■□□□□ 0.92
SMARCD3-206ENST00000470588 CWF19L2Q2TBE0 894 aaKnown RBP20.82■□□□□ 0.92
SMARCD3-206ENST00000470588 LRP10Q7Z4F1 713 aa20.82■□□□□ 0.92
SMARCD3-206ENST00000470588 RHPN1Q8TCX5 695 aa20.82■□□□□ 0.92
SMARCD3-206ENST00000470588 METTL22Q9BUU2 404 aaPredicted RBP20.82■□□□□ 0.92
SMARCD3-206ENST00000470588 ANKRD13DQ6ZTN6 518 aa20.81■□□□□ 0.92
SMARCD3-206ENST00000470588 USP21Q9UK80 565 aa20.81■□□□□ 0.92
SMARCD3-206ENST00000470588 HSCBQ8IWL3 235 aa20.8■□□□□ 0.92
SMARCD3-206ENST00000470588 KIF2CQ99661 725 aa20.8■□□□□ 0.92
SMARCD3-206ENST00000470588 USP26Q9BXU7 913 aa20.8■□□□□ 0.92
SMARCD3-206ENST00000470588 IGKV5-2P06315 115 aa20.79■□□□□ 0.92
SMARCD3-206ENST00000470588 NFKBIBQ15653 356 aa20.79■□□□□ 0.92
SMARCD3-206ENST00000470588 PIGBQ92521 554 aa20.78■□□□□ 0.92
SMARCD3-206ENST00000470588 ANTXR1Q9H6X2 564 aa20.78■□□□□ 0.92
SMARCD3-206ENST00000470588 BCL9O00512 1426 aa20.78■□□□□ 0.92
SMARCD3-206ENST00000470588 NEURL1BA8MQ27 555 aa20.77■□□□□ 0.92
SMARCD3-206ENST00000470588 PTCD1O75127 700 aaKnown RBP20.77■□□□□ 0.92
SMARCD3-206ENST00000470588 REC8O95072 547 aa20.77■□□□□ 0.92
SMARCD3-206ENST00000470588 TEX13AQ9BXU3 409 aaPredicted RBP20.77■□□□□ 0.92
SMARCD3-206ENST00000470588 KAT6BQ8WYB5 2073 aa20.77■□□□□ 0.92
SMARCD3-206ENST00000470588 ERC2O15083 957 aa20.77■□□□□ 0.91
SMARCD3-206ENST00000470588 GCKRQ14397 625 aa20.77■□□□□ 0.91
SMARCD3-206ENST00000470588 ERC1Q8IUD2 1116 aa20.77■□□□□ 0.91
SMARCD3-206ENST00000470588 SYTL4Q96C24 671 aaPredicted RBP20.77■□□□□ 0.91
SMARCD3-206ENST00000470588 SUCLG2Q96I99 432 aa20.77■□□□□ 0.91
SMARCD3-206ENST00000470588 IL1RAPL2Q9NP60 686 aa20.77■□□□□ 0.91
SMARCD3-206ENST00000470588 FAM98CQ17RN3 349 aaKnown RBP20.76■□□□□ 0.91
SMARCD3-206ENST00000470588 VSIG10Q8N0Z9 540 aa20.76■□□□□ 0.91
SMARCD3-206ENST00000470588 MYD88Q99836 296 aa20.76■□□□□ 0.91
SMARCD3-206ENST00000470588 PLBD2Q8NHP8 589 aa20.75■□□□□ 0.91
SMARCD3-206ENST00000470588 KAZALD1Q96I82 304 aa20.74■□□□□ 0.91
SMARCD3-206ENST00000470588 A0A0G2JS52 829 aa20.74■□□□□ 0.91
SMARCD3-206ENST00000470588 OS9Q13438 667 aaPredicted RBP20.74■□□□□ 0.91
SMARCD3-206ENST00000470588 NUTM1Q86Y26 1132 aa20.74■□□□□ 0.91
SMARCD3-206ENST00000470588 ATG3Q9NT62 314 aa20.74■□□□□ 0.91
SMARCD3-206ENST00000470588 MARCH10Q8NA82 808 aaPredicted RBP20.73■□□□□ 0.91
SMARCD3-206ENST00000470588 SLKQ9H2G2 1235 aaPredicted RBP20.73■□□□□ 0.91
SMARCD3-206ENST00000470588 BICC1Q9H694 974 aaKnown RBP20.73■□□□□ 0.91
SMARCD3-206ENST00000470588 ASAP1Q9ULH1 1129 aa20.73■□□□□ 0.91
SMARCD3-206ENST00000470588 USP42Q9H9J4 1324 aaKnown RBP20.73■□□□□ 0.91
SMARCD3-206ENST00000470588 TRIM6-TRIM34B2RNG4 842 aa20.72■□□□□ 0.91
SMARCD3-206ENST00000470588 PRIM1P49642 420 aaKnown RBP20.72■□□□□ 0.91
SMARCD3-206ENST00000470588 RABEP1Q15276 862 aa20.72■□□□□ 0.91
SMARCD3-206ENST00000470588 TSHZ3Q63HK5 1081 aa20.72■□□□□ 0.91
SMARCD3-206ENST00000470588 RBM42Q9BTD8 480 aaKnown RBP20.72■□□□□ 0.91
SMARCD3-206ENST00000470588 CLASRPQ8N2M8 674 aaKnown RBP20.72■□□□□ 0.91
SMARCD3-206ENST00000470588 RILPL2Q969X0 211 aa20.72■□□□□ 0.91
SMARCD3-206ENST00000470588 AFF2P51816 1311 aa20.72■□□□□ 0.91
SMARCD3-206ENST00000470588 NBPF26B4DH59 902 aa20.71■□□□□ 0.91
SMARCD3-206ENST00000470588 STARD3NLO95772 234 aa20.71■□□□□ 0.91
SMARCD3-206ENST00000470588 CHMLP26374 656 aa20.71■□□□□ 0.91
SMARCD3-206ENST00000470588 NBPF14Q5TI25 921 aa20.71■□□□□ 0.91
SMARCD3-206ENST00000470588 NBPF10Q6P3W6 841 aaKnown RBP20.71■□□□□ 0.91
SMARCD3-206ENST00000470588 NBPF15Q8N660 670 aa20.71■□□□□ 0.91
SMARCD3-206ENST00000470588 TTC41PQ6P2S7 1318 aa20.71■□□□□ 0.91
SMARCD3-206ENST00000470588 COL15A1P39059 1388 aa20.71■□□□□ 0.91
SMARCD3-206ENST00000470588 PIP4K2AP48426 406 aaPredicted RBP20.7■□□□□ 0.9
SMARCD3-206ENST00000470588 G3BP1Q13283 466 aaKnown RBP eCLIP20.7■□□□□ 0.9
SMARCD3-206ENST00000470588 ESYT1Q9BSJ8 1104 aa20.7■□□□□ 0.9
SMARCD3-206ENST00000470588 THSD7AQ9UPZ6 1657 aa20.7■□□□□ 0.9
SMARCD3-206ENST00000470588 TUBGCP6Q96RT7 1819 aa20.7■□□□□ 0.9
SMARCD3-206ENST00000470588 ARFGEF2Q9Y6D5 1785 aa20.7■□□□□ 0.9
SMARCD3-206ENST00000470588 PI4K2BQ8TCG2 481 aa20.69■□□□□ 0.9
SMARCD3-206ENST00000470588 CHMP5Q9NZZ3 219 aa20.69■□□□□ 0.9
SMARCD3-206ENST00000470588 EPB41L2O43491 1005 aaKnown RBP20.68■□□□□ 0.9
SMARCD3-206ENST00000470588 TRPC5Q9UL62 973 aaPredicted RBP20.68■□□□□ 0.9
SMARCD3-206ENST00000470588 PA2G4Q9UQ80 394 aaKnown RBP20.68■□□□□ 0.9
SMARCD3-206ENST00000470588 ACSBG1Q96GR2 724 aa20.67■□□□□ 0.9
SMARCD3-206ENST00000470588 GPATCH3Q96I76 525 aa20.67■□□□□ 0.9
SMARCD3-206ENST00000470588 AFDNP55196 1824 aaKnown RBP20.67■□□□□ 0.9
SMARCD3-206ENST00000470588 GLRX3O76003 335 aaKnown RBP20.67■□□□□ 0.9
SMARCD3-206ENST00000470588 A1BGP04217 495 aa20.67■□□□□ 0.9
SMARCD3-206ENST00000470588 SPRYD3Q8NCJ5 442 aa20.67■□□□□ 0.9
SMARCD3-206ENST00000470588 GJD4Q96KN9 370 aaPredicted RBP20.67■□□□□ 0.9
SMARCD3-206ENST00000470588 ATRNO75882 1429 aa20.66■□□□□ 0.9
SMARCD3-206ENST00000470588 K7ELQ4 463 aaPredicted RBP20.66■□□□□ 0.9
SMARCD3-206ENST00000470588 IFIT2P09913 472 aaKnown RBP20.66■□□□□ 0.9
SMARCD3-206ENST00000470588 DNAJC10Q8IXB1 793 aa20.66■□□□□ 0.9
SMARCD3-206ENST00000470588 CNTROBQ8N137 903 aa20.66■□□□□ 0.9
SMARCD3-206ENST00000470588 SMARCC1Q92922 1105 aaPredicted RBP20.66■□□□□ 0.9
SMARCD3-206ENST00000470588 A0A087WZG4 1122 aa20.65■□□□□ 0.9
SMARCD3-206ENST00000470588 FRAT2O75474 233 aaPredicted RBP20.65■□□□□ 0.9
Retrieved 100 of 20,778 RNA–protein pairs in 27.5 ms