RNA–Protein interactions for RNA: ENST00000470167.1

COL3A1-205, Transcript of collagen type III alpha 1 chain, humanhuman

TSL 2

Gene COL3A1, Length 628 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL3A1-205ENST00000470167 C22orf23Q9BZE7 217 aa6.22□□□□□ -1.41
COL3A1-205ENST00000470167 PUF60Q9UHX1 559 aaKnown RBP6.22□□□□□ -1.41
COL3A1-205ENST00000470167 ZBED9Q6R2W3 1325 aa6.22□□□□□ -1.41
COL3A1-205ENST00000470167 CUX2O14529 1486 aa6.22□□□□□ -1.41
COL3A1-205ENST00000470167 CCDC194A0A1B0GVG4 234 aa6.21□□□□□ -1.42
COL3A1-205ENST00000470167 IPO5O00410 1097 aaKnown RBP6.21□□□□□ -1.42
COL3A1-205ENST00000470167 ATP9BO43861 1147 aa6.21□□□□□ -1.42
COL3A1-205ENST00000470167 OFD1O75665 1012 aa6.21□□□□□ -1.42
COL3A1-205ENST00000470167 ITGAEP38570 1179 aa6.21□□□□□ -1.42
COL3A1-205ENST00000470167 GTF2A1P52655 376 aaPredicted RBP6.21□□□□□ -1.42
COL3A1-205ENST00000470167 HMGN5P82970 282 aaKnown RBP6.21□□□□□ -1.42
COL3A1-205ENST00000470167 TJAP1Q5JTD0 557 aa6.21□□□□□ -1.42
COL3A1-205ENST00000470167 PDZRN4Q6ZMN7 1036 aaPredicted RBP6.21□□□□□ -1.42
COL3A1-205ENST00000470167 KIAA1211Q6ZU35 1233 aa6.21□□□□□ -1.42
COL3A1-205ENST00000470167 NLRP13Q86W25 1043 aa6.21□□□□□ -1.42
COL3A1-205ENST00000470167 KLHL23Q8NBE8 558 aa6.21□□□□□ -1.42
COL3A1-205ENST00000470167 TMC1Q8TDI8 760 aa6.21□□□□□ -1.42
COL3A1-205ENST00000470167 RNF166Q96A37 237 aaPredicted RBP6.21□□□□□ -1.42
COL3A1-205ENST00000470167 SPOCK3Q9BQ16 436 aa6.21□□□□□ -1.42
COL3A1-205ENST00000470167 CHCHD3Q9NX63 227 aaKnown RBP6.21□□□□□ -1.42
COL3A1-205ENST00000470167 SWAP70Q9UH65 585 aa6.21□□□□□ -1.42
COL3A1-205ENST00000470167 FBXO9Q9UK97 447 aaPredicted RBP6.21□□□□□ -1.42
COL3A1-205ENST00000470167 DDX49Q9Y6V7 483 aaKnown RBP6.21□□□□□ -1.42
COL3A1-205ENST00000470167 PES1O00541 588 aaKnown RBP6.2□□□□□ -1.42
COL3A1-205ENST00000470167 FAM163BP0C2L3 166 aa6.2□□□□□ -1.42
COL3A1-205ENST00000470167 SETSIPP0DME0 302 aa6.2□□□□□ -1.42
COL3A1-205ENST00000470167 TRPC1P48995 793 aa6.2□□□□□ -1.42
COL3A1-205ENST00000470167 BIRC2Q13490 618 aa6.2□□□□□ -1.42
COL3A1-205ENST00000470167 NBPF14Q5TI25 921 aa6.2□□□□□ -1.42
COL3A1-205ENST00000470167 PTCRAQ6ISU1 281 aaPredicted RBP6.2□□□□□ -1.42
COL3A1-205ENST00000470167 SAMD3Q8N6K7 520 aa6.2□□□□□ -1.42
COL3A1-205ENST00000470167 ARMC2Q8NEN0 867 aa6.2□□□□□ -1.42
COL3A1-205ENST00000470167 TBC1D22AQ8WUA7 517 aa6.2□□□□□ -1.42
COL3A1-205ENST00000470167 SREK1Q8WXA9 508 aaKnown RBP6.2□□□□□ -1.42
COL3A1-205ENST00000470167 CFAP53Q96M91 514 aa6.2□□□□□ -1.42
COL3A1-205ENST00000470167 SLC26A8Q96RN1 970 aa6.2□□□□□ -1.42
COL3A1-205ENST00000470167 LZTS2Q9BRK4 669 aa6.2□□□□□ -1.42
COL3A1-205ENST00000470167 POLR3CQ9BUI4 534 aaPredicted RBP6.2□□□□□ -1.42
COL3A1-205ENST00000470167 CDCA7Q9BWT1 371 aaPredicted RBP6.2□□□□□ -1.42
COL3A1-205ENST00000470167 SLC6A16Q9GZN6 736 aa6.2□□□□□ -1.42
COL3A1-205ENST00000470167 UNC93B1Q9H1C4 597 aa6.2□□□□□ -1.42
COL3A1-205ENST00000470167 RETREG1Q9H6L5 497 aa6.2□□□□□ -1.42
COL3A1-205ENST00000470167 IL21Q9HBE4 155 aa6.2□□□□□ -1.42
COL3A1-205ENST00000470167 UTP6Q9NYH9 597 aaKnown RBP6.2□□□□□ -1.42
COL3A1-205ENST00000470167 FSD2A1L4K1 749 aa6.19□□□□□ -1.42
COL3A1-205ENST00000470167 CARNS1A5YM72 827 aa6.19□□□□□ -1.42
COL3A1-205ENST00000470167 CCP110O43303 1012 aa6.19□□□□□ -1.42
COL3A1-205ENST00000470167 TIMM44O43615 452 aa6.19□□□□□ -1.42
COL3A1-205ENST00000470167 IGHDP01880 384 aa6.19□□□□□ -1.42
COL3A1-205ENST00000470167 NAP1L1P55209 391 aaKnown RBP6.19□□□□□ -1.42
COL3A1-205ENST00000470167 PTK2Q05397 1052 aa6.19□□□□□ -1.42
COL3A1-205ENST00000470167 GABPB1Q06547 395 aaPredicted RBP6.19□□□□□ -1.42
COL3A1-205ENST00000470167 MLECQ14165 292 aa6.19□□□□□ -1.42
COL3A1-205ENST00000470167 RASA3Q14644 834 aa6.19□□□□□ -1.42
COL3A1-205ENST00000470167 NFKBIBQ15653 356 aa6.19□□□□□ -1.42
COL3A1-205ENST00000470167 TSNAXIP1Q2TAA8 658 aa6.19□□□□□ -1.42
COL3A1-205ENST00000470167 PDXDC2PQ6P474 469 aa6.19□□□□□ -1.42
COL3A1-205ENST00000470167 GIMAP6Q6P9H5 292 aa6.19□□□□□ -1.42
COL3A1-205ENST00000470167 CATIPQ7Z7H3 387 aa6.19□□□□□ -1.42
COL3A1-205ENST00000470167 C11orf96Q7Z7L8 435 aa6.19□□□□□ -1.42
COL3A1-205ENST00000470167 NKX2-3Q8TAU0 364 aa6.19□□□□□ -1.42
COL3A1-205ENST00000470167 FAM174AQ8TBP5 190 aa6.19□□□□□ -1.42
COL3A1-205ENST00000470167 GPKOWQ92917 476 aaPredicted RBP eCLIP6.19□□□□□ -1.42
COL3A1-205ENST00000470167 ZNF396Q96N95 335 aaPredicted RBP6.19□□□□□ -1.42
COL3A1-205ENST00000470167 MMTAG2Q9BU76 263 aaKnown RBP6.19□□□□□ -1.42
COL3A1-205ENST00000470167 RSPH9Q9H1X1 276 aaPredicted RBP6.19□□□□□ -1.42
COL3A1-205ENST00000470167 CALCOCO1Q9P1Z2 691 aa6.19□□□□□ -1.42
COL3A1-205ENST00000470167 PCDHB9Q9Y5E1 797 aa6.19□□□□□ -1.42
COL3A1-205ENST00000470167 SCRIBQ14160 1630 aa6.18□□□□□ -1.42
COL3A1-205ENST00000470167 U2SURPO15042 1029 aaKnown RBP6.18□□□□□ -1.42
COL3A1-205ENST00000470167 PPFIA2O75334 1257 aa6.18□□□□□ -1.42
COL3A1-205ENST00000470167 WDHD1O75717 1129 aaPredicted RBP6.18□□□□□ -1.42
COL3A1-205ENST00000470167 S1PR4O95977 384 aa6.18□□□□□ -1.42
COL3A1-205ENST00000470167 CSB-PGBD3P0DP91 1061 aa6.18□□□□□ -1.42
COL3A1-205ENST00000470167 SKIP12755 728 aa6.18□□□□□ -1.42
COL3A1-205ENST00000470167 KIAA2012Q0VF49 1180 aa6.18□□□□□ -1.42
COL3A1-205ENST00000470167 ADAM32Q8TC27 787 aa6.18□□□□□ -1.42
COL3A1-205ENST00000470167 SCYL1Q96KG9 808 aa6.18□□□□□ -1.42
COL3A1-205ENST00000470167 ARHGAP9Q9BRR9 750 aa6.18□□□□□ -1.42
COL3A1-205ENST00000470167 CARD14Q9BXL6 1004 aa6.18□□□□□ -1.42
COL3A1-205ENST00000470167 PPP4R2Q9NY27 417 aa6.18□□□□□ -1.42
COL3A1-205ENST00000470167 KLHL42Q9P2K6 505 aa6.18□□□□□ -1.42
COL3A1-205ENST00000470167 GPSM3Q9Y4H4 160 aa6.18□□□□□ -1.42
COL3A1-205ENST00000470167 PHLDB1Q86UU1 1377 aa6.18□□□□□ -1.42
COL3A1-205ENST00000470167 USP17L3A6NCW0 530 aa6.17□□□□□ -1.42
COL3A1-205ENST00000470167 USP17L4A6NCW7 530 aa6.17□□□□□ -1.42
COL3A1-205ENST00000470167 USP17L5A8MUK1 530 aa6.17□□□□□ -1.42
COL3A1-205ENST00000470167 HMMRO75330 724 aa6.17□□□□□ -1.42
COL3A1-205ENST00000470167 PARNO95453 639 aaKnown RBP6.17□□□□□ -1.42
COL3A1-205ENST00000470167 GSCP56915 257 aaPredicted RBP6.17□□□□□ -1.42
COL3A1-205ENST00000470167 SARNPP82979 210 aaKnown RBP6.17□□□□□ -1.42
COL3A1-205ENST00000470167 ZSCAN26Q16670 478 aa6.17□□□□□ -1.42
COL3A1-205ENST00000470167 LINC01559Q495D7 138 aa6.17□□□□□ -1.42
COL3A1-205ENST00000470167 USP17L2Q6R6M4 530 aa6.17□□□□□ -1.42
COL3A1-205ENST00000470167 SH3BP5LQ7L8J4 393 aa6.17□□□□□ -1.42
COL3A1-205ENST00000470167 USP17L1Q7RTZ2 530 aa6.17□□□□□ -1.42
COL3A1-205ENST00000470167 IQCF2Q8IXL9 164 aa6.17□□□□□ -1.42
COL3A1-205ENST00000470167 DEPDC4Q8N2C3 294 aa6.17□□□□□ -1.42
COL3A1-205ENST00000470167 RSPH1Q8WYR4 309 aa6.17□□□□□ -1.42
COL3A1-205ENST00000470167 ZBTB9Q96C00 473 aa6.17□□□□□ -1.42
Retrieved 100 of 20,778 RNA–protein pairs in 21.5 ms