RNA–Protein interactions for RNA: ENST00000470076.1

COL7A1-208, Transcript of collagen type VII alpha 1 chain, humanhuman

TSL 2

Gene COL7A1, Length 651 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL7A1-208ENST00000470076 PRELPP51888 382 aa23.16■■□□□ 1.3
COL7A1-208ENST00000470076 NBPF10Q6P3W6 841 aaKnown RBP23.16■■□□□ 1.3
COL7A1-208ENST00000470076 NBPF15Q8N660 670 aa23.16■■□□□ 1.3
COL7A1-208ENST00000470076 RRAGCQ9HB90 399 aa23.16■■□□□ 1.3
COL7A1-208ENST00000470076 KDM3BQ7LBC6 1761 aa23.15■■□□□ 1.3
COL7A1-208ENST00000470076 NFE2L2Q16236 605 aa23.15■■□□□ 1.3
COL7A1-208ENST00000470076 NBPF5PQ86XG9 351 aaPredicted RBP23.15■■□□□ 1.3
COL7A1-208ENST00000470076 CNKSR1Q969H4 720 aa23.15■■□□□ 1.3
COL7A1-208ENST00000470076 MIS18AQ9NYP9 233 aa23.15■■□□□ 1.3
COL7A1-208ENST00000470076 TIAM2Q8IVF5 1701 aa23.15■■□□□ 1.3
COL7A1-208ENST00000470076 FER1L6Q2WGJ9 1857 aa23.14■■□□□ 1.29
COL7A1-208ENST00000470076 C21orf2O43822 256 aa23.14■■□□□ 1.29
COL7A1-208ENST00000470076 FSTL1Q12841 308 aa23.14■■□□□ 1.29
COL7A1-208ENST00000470076 STYK1Q6J9G0 422 aa23.14■■□□□ 1.29
COL7A1-208ENST00000470076 MAPK8IP3Q9UPT6 1336 aa23.13■■□□□ 1.29
COL7A1-208ENST00000470076 GLTPD2A6NH11 291 aa23.13■■□□□ 1.29
COL7A1-208ENST00000470076 SRGNP10124 158 aa23.13■■□□□ 1.29
COL7A1-208ENST00000470076 MASTLQ96GX5 879 aa23.12■■□□□ 1.29
COL7A1-208ENST00000470076 ZNF219Q9P2Y4 722 aaPredicted RBP23.12■■□□□ 1.29
COL7A1-208ENST00000470076 DICER1Q9UPY3 1922 aaKnown RBP23.12■■□□□ 1.29
COL7A1-208ENST00000470076 ARFGEF2Q9Y6D5 1785 aa23.12■■□□□ 1.29
COL7A1-208ENST00000470076 CACNA1SQ13698 1873 aa23.11■■□□□ 1.29
COL7A1-208ENST00000470076 SLX4Q8IY92 1834 aa23.11■■□□□ 1.29
COL7A1-208ENST00000470076 TPTE2Q6XPS3 522 aa23.11■■□□□ 1.29
COL7A1-208ENST00000470076 NIP7Q9Y221 180 aaKnown RBP eCLIP23.11■■□□□ 1.29
COL7A1-208ENST00000470076 LTBP3Q9NS15 1303 aa23.1■■□□□ 1.29
COL7A1-208ENST00000470076 RALBP1Q15311 655 aa23.1■■□□□ 1.29
COL7A1-208ENST00000470076 SOGA3Q5TF21 947 aa23.1■■□□□ 1.29
COL7A1-208ENST00000470076 PRPF40BQ6NWY9 871 aaKnown RBP23.1■■□□□ 1.29
COL7A1-208ENST00000470076 VEGFAP15692 232 aaPredicted RBP23.09■■□□□ 1.29
COL7A1-208ENST00000470076 EIF4A1P60842 406 aaKnown RBP23.09■■□□□ 1.29
COL7A1-208ENST00000470076 WDR90Q96KV7 1748 aa23.08■■□□□ 1.29
COL7A1-208ENST00000470076 DPY19L2Q6NUT2 758 aa23.08■■□□□ 1.29
COL7A1-208ENST00000470076 THUMPD2Q9BTF0 503 aaKnown RBP23.08■■□□□ 1.29
COL7A1-208ENST00000470076 TAOK3Q9H2K8 898 aa23.08■■□□□ 1.29
COL7A1-208ENST00000470076 KLRG2A4D1S0 409 aaPredicted RBP23.07■■□□□ 1.28
COL7A1-208ENST00000470076 NPR1P16066 1061 aa23.07■■□□□ 1.28
COL7A1-208ENST00000470076 HLFQ16534 295 aa23.07■■□□□ 1.28
COL7A1-208ENST00000470076 ERFEQ4G0M1 354 aa23.07■■□□□ 1.28
COL7A1-208ENST00000470076 DNAJC5GQ8N7S2 189 aa23.07■■□□□ 1.28
COL7A1-208ENST00000470076 SMC1BQ8NDV3 1235 aa23.07■■□□□ 1.28
COL7A1-208ENST00000470076 ERVV-1B6SEH8 477 aa23.05■■□□□ 1.28
COL7A1-208ENST00000470076 NUP98P52948 1817 aa23.05■■□□□ 1.28
COL7A1-208ENST00000470076 NGEFQ8N5V2 710 aa23.04■■□□□ 1.28
COL7A1-208ENST00000470076 RRP7AQ9Y3A4 280 aaKnown RBP23.04■■□□□ 1.28
COL7A1-208ENST00000470076 FAM177BA6PVY3 158 aa23.03■■□□□ 1.28
COL7A1-208ENST00000470076 GTF2E1P29083 439 aaPredicted RBP23.03■■□□□ 1.28
COL7A1-208ENST00000470076 KIF6Q6ZMV9 814 aa23.03■■□□□ 1.28
COL7A1-208ENST00000470076 C7orf43Q8WVR3 580 aa23.03■■□□□ 1.28
COL7A1-208ENST00000470076 MAP3K15Q6ZN16 1313 aa23.03■■□□□ 1.28
COL7A1-208ENST00000470076 RIPK4P57078 832 aa23.02■■□□□ 1.28
COL7A1-208ENST00000470076 CCDC93Q567U6 631 aa23.02■■□□□ 1.28
COL7A1-208ENST00000470076 NYXQ9GZU5 481 aa23.02■■□□□ 1.28
COL7A1-208ENST00000470076 ERBB4Q15303 1308 aa23.02■■□□□ 1.28
COL7A1-208ENST00000470076 MYL6BP14649 208 aa23.01■■□□□ 1.27
COL7A1-208ENST00000470076 TSPYL4Q9UJ04 414 aa23.01■■□□□ 1.27
COL7A1-208ENST00000470076 ALDH1B1P30837 517 aa23■■□□□ 1.27
COL7A1-208ENST00000470076 LMOD3Q0VAK6 560 aa23■■□□□ 1.27
COL7A1-208ENST00000470076 TTLL7Q6ZT98 887 aa23■■□□□ 1.27
COL7A1-208ENST00000470076 BABAM1Q9NWV8 329 aa23■■□□□ 1.27
COL7A1-208ENST00000470076 POTECB2RU33 542 aa22.99■■□□□ 1.27
COL7A1-208ENST00000470076 DDX10Q13206 875 aaKnown RBP22.99■■□□□ 1.27
COL7A1-208ENST00000470076 MYBBP1AQ9BQG0 1328 aaKnown RBP22.99■■□□□ 1.27
COL7A1-208ENST00000470076 TMPOP42166 694 aaKnown RBP22.98■■□□□ 1.27
COL7A1-208ENST00000470076 HTRA3P83110 453 aa22.98■■□□□ 1.27
COL7A1-208ENST00000470076 IBTKQ9P2D0 1353 aaPredicted RBP22.98■■□□□ 1.27
COL7A1-208ENST00000470076 FKBP4Q02790 459 aaKnown RBP eCLIP22.97■■□□□ 1.27
COL7A1-208ENST00000470076 CRY2Q49AN0 593 aa22.97■■□□□ 1.27
COL7A1-208ENST00000470076 RTKN2Q8IZC4 609 aa22.97■■□□□ 1.27
COL7A1-208ENST00000470076 KLRG1Q96E93 195 aa22.97■■□□□ 1.27
COL7A1-208ENST00000470076 ZBTB3Q9H5J0 574 aa22.97■■□□□ 1.27
COL7A1-208ENST00000470076 IFFO2Q5TF58 517 aa22.96■■□□□ 1.27
COL7A1-208ENST00000470076 NUTM1Q86Y26 1132 aa22.96■■□□□ 1.27
COL7A1-208ENST00000470076 ABCC12Q96J65 1359 aa22.96■■□□□ 1.27
COL7A1-208ENST00000470076 RIC1Q4ADV7 1423 aa22.96■■□□□ 1.27
COL7A1-208ENST00000470076 GPTP24298 496 aa22.95■■□□□ 1.26
COL7A1-208ENST00000470076 GIGYF2Q6Y7W6 1299 aaKnown RBP22.95■■□□□ 1.26
COL7A1-208ENST00000470076 UBN2Q6ZU65 1347 aa22.94■■□□□ 1.26
COL7A1-208ENST00000470076 DDNO94850 711 aaPredicted RBP22.94■■□□□ 1.26
COL7A1-208ENST00000470076 ZNF34Q8IZ26 560 aa22.94■■□□□ 1.26
COL7A1-208ENST00000470076 EIF2S2P20042 333 aaKnown RBP22.93■■□□□ 1.26
COL7A1-208ENST00000470076 PDIA6Q15084 440 aa22.92■■□□□ 1.26
COL7A1-208ENST00000470076 PARP10Q53GL7 1025 aa22.92■■□□□ 1.26
COL7A1-208ENST00000470076 SUSD4Q5VX71 490 aa22.92■■□□□ 1.26
COL7A1-208ENST00000470076 OLFM4Q6UX06 510 aa22.92■■□□□ 1.26
COL7A1-208ENST00000470076 LRP10Q7Z4F1 713 aa22.92■■□□□ 1.26
COL7A1-208ENST00000470076 JMYQ8N9B5 988 aa22.92■■□□□ 1.26
COL7A1-208ENST00000470076 RPGRQ92834 1020 aaKnown RBP22.92■■□□□ 1.26
COL7A1-208ENST00000470076 ZNF277Q9NRM2 450 aaPredicted RBP22.92■■□□□ 1.26
COL7A1-208ENST00000470076 IQCA1LA6NCM1 817 aa22.91■■□□□ 1.26
COL7A1-208ENST00000470076 HOXA10P31260 410 aaPredicted RBP22.91■■□□□ 1.26
COL7A1-208ENST00000470076 WDR43Q15061 677 aaKnown RBP eCLIP22.91■■□□□ 1.26
COL7A1-208ENST00000470076 CC2D2BQ6DHV5 1058 aa22.91■■□□□ 1.26
COL7A1-208ENST00000470076 PPP1R42Q7Z4L9 355 aa22.91■■□□□ 1.26
COL7A1-208ENST00000470076 SCN4AP35499 1836 aa22.91■■□□□ 1.26
COL7A1-208ENST00000470076 NTSR2O95665 410 aa22.9■■□□□ 1.26
COL7A1-208ENST00000470076 CCDC146Q8IYE0 955 aa22.9■■□□□ 1.26
COL7A1-208ENST00000470076 RUNDC1Q96C34 613 aa22.9■■□□□ 1.26
COL7A1-208ENST00000470076 L3MBTL3Q96JM7 780 aaPredicted RBP22.9■■□□□ 1.26
COL7A1-208ENST00000470076 IARSP41252 1262 aaKnown RBP22.89■■□□□ 1.25
Retrieved 100 of 20,778 RNA–protein pairs in 72.6 ms