RNA–Protein interactions for RNA: ENST00000469670.1

TTC28-205, Transcript of tetratricopeptide repeat domain 28, humanhuman

TSL 3

Gene TTC28, Length 574 nt, Biotype retained intron, Subcellular localisation Cytosol .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TTC28-205ENST00000469670 PRDM10Q9NQV6 1147 aa24.68■■□□□ 1.54
TTC28-205ENST00000469670 A1BGP04217 495 aa24.67■■□□□ 1.54
TTC28-205ENST00000469670 L3MBTL3Q96JM7 780 aaPredicted RBP24.67■■□□□ 1.54
TTC28-205ENST00000469670 AIDAQ96BJ3 306 aa24.66■■□□□ 1.54
TTC28-205ENST00000469670 FMNL2Q96PY5 1086 aa24.66■■□□□ 1.54
TTC28-205ENST00000469670 GNAT3A8MTJ3 354 aa24.65■■□□□ 1.54
TTC28-205ENST00000469670 SLX4Q8IY92 1834 aa24.65■■□□□ 1.54
TTC28-205ENST00000469670 TMEM88BA6NKF7 163 aa24.64■■□□□ 1.54
TTC28-205ENST00000469670 CTCFP49711 727 aaPredicted RBP24.64■■□□□ 1.54
TTC28-205ENST00000469670 VEGFBP49765 207 aa24.64■■□□□ 1.54
TTC28-205ENST00000469670 DZIP3Q86Y13 1208 aaKnown RBP24.64■■□□□ 1.54
TTC28-205ENST00000469670 GAS2L2Q8NHY3 880 aa24.64■■□□□ 1.54
TTC28-205ENST00000469670 CCDC93Q567U6 631 aa24.63■■□□□ 1.53
TTC28-205ENST00000469670 C7orf43Q8WVR3 580 aa24.63■■□□□ 1.53
TTC28-205ENST00000469670 ITGBL1O95965 494 aaPredicted RBP24.62■■□□□ 1.53
TTC28-205ENST00000469670 EAPPQ56P03 285 aaPredicted RBP24.62■■□□□ 1.53
TTC28-205ENST00000469670 PCGF6Q9BYE7 350 aa24.62■■□□□ 1.53
TTC28-205ENST00000469670 NBPF5PQ86XG9 351 aaPredicted RBP24.61■■□□□ 1.53
TTC28-205ENST00000469670 FKBP4Q02790 459 aaKnown RBP eCLIP24.6■■□□□ 1.53
TTC28-205ENST00000469670 CLEC11AQ9Y240 323 aa24.6■■□□□ 1.53
TTC28-205ENST00000469670 ZNF541Q9H0D2 1346 aa24.6■■□□□ 1.53
TTC28-205ENST00000469670 U2SURPO15042 1029 aaKnown RBP24.59■■□□□ 1.53
TTC28-205ENST00000469670 KCNQ3O43525 872 aa24.59■■□□□ 1.53
TTC28-205ENST00000469670 NPR1P16066 1061 aa24.59■■□□□ 1.53
TTC28-205ENST00000469670 CC2D1BQ5T0F9 858 aaKnown RBP24.59■■□□□ 1.53
TTC28-205ENST00000469670 ZNF277Q9NRM2 450 aaPredicted RBP24.59■■□□□ 1.53
TTC28-205ENST00000469670 WBP1LQ9NX94 342 aa24.59■■□□□ 1.53
TTC28-205ENST00000469670 HACL1Q9UJ83 578 aa24.59■■□□□ 1.53
TTC28-205ENST00000469670 ARFGEF2Q9Y6D5 1785 aa24.58■■□□□ 1.53
TTC28-205ENST00000469670 PIP4K2AP48426 406 aaPredicted RBP24.58■■□□□ 1.53
TTC28-205ENST00000469670 CLEC4GQ6UXB4 293 aa24.58■■□□□ 1.53
TTC28-205ENST00000469670 SCN4AP35499 1836 aa24.58■■□□□ 1.53
TTC28-205ENST00000469670 BTBD11A6QL63 1104 aa24.57■■□□□ 1.52
TTC28-205ENST00000469670 EPHX2P34913 555 aa24.57■■□□□ 1.52
TTC28-205ENST00000469670 LBX1P52954 281 aa24.57■■□□□ 1.52
TTC28-205ENST00000469670 USP16Q9Y5T5 823 aa24.57■■□□□ 1.52
TTC28-205ENST00000469670 CEMIPQ8WUJ3 1361 aa24.56■■□□□ 1.52
TTC28-205ENST00000469670 CACNA1SQ13698 1873 aa24.56■■□□□ 1.52
TTC28-205ENST00000469670 KLRG2A4D1S0 409 aaPredicted RBP24.56■■□□□ 1.52
TTC28-205ENST00000469670 PER1O15534 1290 aaPredicted RBP24.56■■□□□ 1.52
TTC28-205ENST00000469670 ZNF652Q9Y2D9 606 aa24.56■■□□□ 1.52
TTC28-205ENST00000469670 COL3A1P02461 1466 aaPredicted RBP24.56■■□□□ 1.52
TTC28-205ENST00000469670 KIF7Q2M1P5 1343 aa24.56■■□□□ 1.52
TTC28-205ENST00000469670 SIPA1L3O60292 1781 aaPredicted RBP24.55■■□□□ 1.52
TTC28-205ENST00000469670 BCORQ6W2J9 1755 aa24.55■■□□□ 1.52
TTC28-205ENST00000469670 OLFM4Q6UX06 510 aa24.55■■□□□ 1.52
TTC28-205ENST00000469670 RTKN2Q8IZC4 609 aa24.55■■□□□ 1.52
TTC28-205ENST00000469670 RASSF10A6NK89 507 aa24.54■■□□□ 1.52
TTC28-205ENST00000469670 DEFB115Q30KQ5 88 aa24.54■■□□□ 1.52
TTC28-205ENST00000469670 PNMA8AQ86V59 439 aaPredicted RBP24.54■■□□□ 1.52
TTC28-205ENST00000469670 MAP1SQ66K74 1059 aaPredicted RBP24.53■■□□□ 1.52
TTC28-205ENST00000469670 TPTE2Q6XPS3 522 aa24.53■■□□□ 1.52
TTC28-205ENST00000469670 CNTROBQ8N137 903 aa24.53■■□□□ 1.52
TTC28-205ENST00000469670 RNF123Q5XPI4 1314 aa24.53■■□□□ 1.52
TTC28-205ENST00000469670 PRAMEF22A3QJZ6 481 aa24.52■■□□□ 1.52
TTC28-205ENST00000469670 FZD9O00144 591 aa24.52■■□□□ 1.52
TTC28-205ENST00000469670 IARSP41252 1262 aaKnown RBP24.52■■□□□ 1.52
TTC28-205ENST00000469670 HSPA8P11142 646 aaKnown RBP24.51■■□□□ 1.51
TTC28-205ENST00000469670 SYNE4Q8N205 404 aa24.51■■□□□ 1.51
TTC28-205ENST00000469670 NIP7Q9Y221 180 aaKnown RBP eCLIP24.51■■□□□ 1.51
TTC28-205ENST00000469670 ADAMTSL1Q8N6G6 1762 aa24.51■■□□□ 1.51
TTC28-205ENST00000469670 PHACTR3Q96KR7 559 aa24.5■■□□□ 1.51
TTC28-205ENST00000469670 FAM177BA6PVY3 158 aa24.49■■□□□ 1.51
TTC28-205ENST00000469670 SNRPA1P09661 255 aaKnown RBP24.49■■□□□ 1.51
TTC28-205ENST00000469670 ALDH1B1P30837 517 aa24.49■■□□□ 1.51
TTC28-205ENST00000469670 GPC2Q8N158 579 aa24.49■■□□□ 1.51
TTC28-205ENST00000469670 WDR33Q9C0J8 1336 aaKnown RBP24.49■■□□□ 1.51
TTC28-205ENST00000469670 RGL2O15211 777 aa24.48■■□□□ 1.51
TTC28-205ENST00000469670 MAP2K1Q02750 393 aaPredicted RBP24.48■■□□□ 1.51
TTC28-205ENST00000469670 CNGB1Q14028 1251 aaPredicted RBP24.48■■□□□ 1.51
TTC28-205ENST00000469670 ABHD8Q96I13 439 aa24.48■■□□□ 1.51
TTC28-205ENST00000469670 ABT1Q9ULW3 272 aaKnown RBP24.48■■□□□ 1.51
TTC28-205ENST00000469670 PRKAR2BP31323 418 aa24.47■■□□□ 1.51
TTC28-205ENST00000469670 NBPF26B4DH59 902 aa24.46■■□□□ 1.51
TTC28-205ENST00000469670 NBPF10Q6P3W6 841 aaKnown RBP24.46■■□□□ 1.51
TTC28-205ENST00000469670 NBPF15Q8N660 670 aa24.46■■□□□ 1.51
TTC28-205ENST00000469670 JDP2Q8WYK2 163 aa24.46■■□□□ 1.51
TTC28-205ENST00000469670 GTF2E1P29083 439 aaPredicted RBP24.45■■□□□ 1.5
TTC28-205ENST00000469670 PSMD1Q99460 953 aa24.45■■□□□ 1.5
TTC28-205ENST00000469670 RSPH6AQ9H0K4 717 aa24.45■■□□□ 1.5
TTC28-205ENST00000469670 DDX21Q9NR30 783 aaKnown RBP eCLIP24.45■■□□□ 1.5
TTC28-205ENST00000469670 NPC1L1Q9UHC9 1359 aa24.44■■□□□ 1.5
TTC28-205ENST00000469670 SLC34A2O95436 690 aa24.43■■□□□ 1.5
TTC28-205ENST00000469670 EIF6P56537 245 aaKnown RBP24.43■■□□□ 1.5
TTC28-205ENST00000469670 HLFQ16534 295 aa24.43■■□□□ 1.5
TTC28-205ENST00000469670 GJA3Q9Y6H8 435 aa24.43■■□□□ 1.5
TTC28-205ENST00000469670 SNED1Q8TER0 1413 aa24.43■■□□□ 1.5
TTC28-205ENST00000469670 FAM161AQ3B820 660 aa24.42■■□□□ 1.5
TTC28-205ENST00000469670 MCM10Q7L590 875 aa24.42■■□□□ 1.5
TTC28-205ENST00000469670 RTF1Q92541 710 aaKnown RBP24.42■■□□□ 1.5
TTC28-205ENST00000469670 LMOD1P29536 600 aaPredicted RBP24.41■■□□□ 1.5
TTC28-205ENST00000469670 CRY2Q49AN0 593 aa24.4■■□□□ 1.5
TTC28-205ENST00000469670 CC2D2BQ6DHV5 1058 aa24.4■■□□□ 1.5
TTC28-205ENST00000469670 FMR1Q06787 632 aaKnown RBP eCLIP24.39■■□□□ 1.49
TTC28-205ENST00000469670 PAXIP1Q6ZW49 1069 aaPredicted RBP24.39■■□□□ 1.49
TTC28-205ENST00000469670 CAPNS2Q96L46 248 aa24.39■■□□□ 1.49
TTC28-205ENST00000469670 ABCC12Q96J65 1359 aa24.39■■□□□ 1.49
TTC28-205ENST00000469670 ECE1P42892 770 aa24.38■■□□□ 1.49
TTC28-205ENST00000469670 SCNN1DP51172 638 aa24.38■■□□□ 1.49
TTC28-205ENST00000469670 NUTM1Q86Y26 1132 aa24.38■■□□□ 1.49
Retrieved 100 of 20,778 RNA–protein pairs in 23.5 ms