RNA–Protein interactions for RNA: ENST00000468421.1

MSX1-202, Transcript of msh homeobox 1, humanhuman

TSL 3

Gene MSX1, Length 509 nt, Biotype processed transcript, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
MSX1-202ENST00000468421 SCN7AQ01118 1682 aa13.6□□□□□ -0.23
MSX1-202ENST00000468421 TUBGCP6Q96RT7 1819 aa13.6□□□□□ -0.23
MSX1-202ENST00000468421 ZBTB7BO15156 539 aaPredicted RBP13.6□□□□□ -0.23
MSX1-202ENST00000468421 DDX58O95786 925 aaKnown RBP13.6□□□□□ -0.23
MSX1-202ENST00000468421 CCT4P50991 539 aaKnown RBP13.6□□□□□ -0.23
MSX1-202ENST00000468421 BEND3Q5T5X7 828 aa13.6□□□□□ -0.23
MSX1-202ENST00000468421 ZNF330Q9Y3S2 320 aaPredicted RBP13.6□□□□□ -0.23
MSX1-202ENST00000468421 CNTNAP4Q9C0A0 1308 aa13.6□□□□□ -0.23
MSX1-202ENST00000468421 IL6STP40189 918 aaPredicted RBP13.59□□□□□ -0.23
MSX1-202ENST00000468421 ANKRD13DQ6ZTN6 518 aa13.59□□□□□ -0.23
MSX1-202ENST00000468421 RIC3Q7Z5B4 369 aa13.59□□□□□ -0.23
MSX1-202ENST00000468421 PLBD2Q8NHP8 589 aa13.59□□□□□ -0.23
MSX1-202ENST00000468421 MEIS3Q99687 375 aa13.59□□□□□ -0.23
MSX1-202ENST00000468421 LRRC4BQ9NT99 713 aa13.59□□□□□ -0.23
MSX1-202ENST00000468421 ZBTB40Q9NUA8 1239 aa13.59□□□□□ -0.23
MSX1-202ENST00000468421 EIF5P55010 431 aaKnown RBP13.58□□□□□ -0.24
MSX1-202ENST00000468421 METTL22Q9BUU2 404 aaPredicted RBP13.58□□□□□ -0.24
MSX1-202ENST00000468421 SRCIN1Q9C0H9 1055 aa13.58□□□□□ -0.24
MSX1-202ENST00000468421 ZBTB3Q9H5J0 574 aa13.58□□□□□ -0.24
MSX1-202ENST00000468421 COL15A1P39059 1388 aa13.58□□□□□ -0.24
MSX1-202ENST00000468421 IGKV5-2P06315 115 aa13.57□□□□□ -0.24
MSX1-202ENST00000468421 CWF19L2Q2TBE0 894 aaKnown RBP13.57□□□□□ -0.24
MSX1-202ENST00000468421 CCDC136Q96JN2 1154 aa13.57□□□□□ -0.24
MSX1-202ENST00000468421 MYD88Q99836 296 aa13.57□□□□□ -0.24
MSX1-202ENST00000468421 C1orf115Q9H7X2 142 aa13.57□□□□□ -0.24
MSX1-202ENST00000468421 PCDHB15Q9Y5E8 787 aa13.57□□□□□ -0.24
MSX1-202ENST00000468421 EP400Q96L91 3159 aa13.56□□□□□ -0.24
MSX1-202ENST00000468421 APBA3O96018 575 aa13.56□□□□□ -0.24
MSX1-202ENST00000468421 AAMPQ13685 434 aa13.56□□□□□ -0.24
MSX1-202ENST00000468421 TXNRD1Q16881 649 aa13.56□□□□□ -0.24
MSX1-202ENST00000468421 RC3H1Q5TC82 1133 aaKnown RBP13.56□□□□□ -0.24
MSX1-202ENST00000468421 PROM2Q8N271 834 aa13.56□□□□□ -0.24
MSX1-202ENST00000468421 MAP3K15Q6ZN16 1313 aa13.56□□□□□ -0.24
MSX1-202ENST00000468421 PLSCR1O15162 318 aa13.55□□□□□ -0.24
MSX1-202ENST00000468421 ALDH1L1O75891 902 aa13.55□□□□□ -0.24
MSX1-202ENST00000468421 KIF6Q6ZMV9 814 aa13.55□□□□□ -0.24
MSX1-202ENST00000468421 SMIM5Q71RC9 77 aa13.55□□□□□ -0.24
MSX1-202ENST00000468421 DZIP3Q86Y13 1208 aaKnown RBP13.55□□□□□ -0.24
MSX1-202ENST00000468421 LINS1Q8NG48 757 aa13.55□□□□□ -0.24
MSX1-202ENST00000468421 USP44Q9H0E7 712 aa13.55□□□□□ -0.24
MSX1-202ENST00000468421 NEURL1BA8MQ27 555 aa13.54□□□□□ -0.24
MSX1-202ENST00000468421 ATP5J2-PTCD1G3V325 749 aa13.54□□□□□ -0.24
MSX1-202ENST00000468421 HLFQ16534 295 aa13.54□□□□□ -0.24
MSX1-202ENST00000468421 SLC27A3Q5K4L6 730 aa13.54□□□□□ -0.24
MSX1-202ENST00000468421 AMIGO3Q86WK7 504 aa13.54□□□□□ -0.24
MSX1-202ENST00000468421 CHMP4BQ9H444 224 aaKnown RBP13.54□□□□□ -0.24
MSX1-202ENST00000468421 TBC1D2BQ9UPU7 963 aa13.54□□□□□ -0.24
MSX1-202ENST00000468421 IBTKQ9P2D0 1353 aaPredicted RBP13.54□□□□□ -0.24
MSX1-202ENST00000468421 GNPATO15228 680 aa13.53□□□□□ -0.24
MSX1-202ENST00000468421 RPS6KA4O75676 772 aa13.53□□□□□ -0.24
MSX1-202ENST00000468421 CAMTA2O94983 1202 aa13.53□□□□□ -0.24
MSX1-202ENST00000468421 NEXNQ0ZGT2 675 aa13.53□□□□□ -0.24
MSX1-202ENST00000468421 ARXQ96QS3 562 aa13.53□□□□□ -0.24
MSX1-202ENST00000468421 KDM2BQ8NHM5 1336 aa13.53□□□□□ -0.24
MSX1-202ENST00000468421 IGHDP01880 384 aa13.52□□□□□ -0.25
MSX1-202ENST00000468421 GNAI3P08754 354 aa13.52□□□□□ -0.25
MSX1-202ENST00000468421 NBPF7P0C2Y1 421 aaPredicted RBP13.52□□□□□ -0.25
MSX1-202ENST00000468421 TCIRG1Q13488 830 aa13.52□□□□□ -0.25
MSX1-202ENST00000468421 GIGYF2Q6Y7W6 1299 aaKnown RBP13.52□□□□□ -0.25
MSX1-202ENST00000468421 ISCA1Q9BUE6 129 aa13.52□□□□□ -0.25
MSX1-202ENST00000468421 COL24A1Q17RW2 1714 aa13.52□□□□□ -0.25
MSX1-202ENST00000468421 CASZ1Q86V15 1759 aa13.52□□□□□ -0.25
MSX1-202ENST00000468421 UTYO14607 1347 aa13.51□□□□□ -0.25
MSX1-202ENST00000468421 ERVV-1B6SEH8 477 aa13.51□□□□□ -0.25
MSX1-202ENST00000468421 UBTFL1P0CB47 393 aaPredicted RBP13.51□□□□□ -0.25
MSX1-202ENST00000468421 GCKRQ14397 625 aa13.51□□□□□ -0.25
MSX1-202ENST00000468421 NPM2Q86SE8 214 aaKnown RBP13.51□□□□□ -0.25
MSX1-202ENST00000468421 AK7Q96M32 723 aa13.51□□□□□ -0.25
MSX1-202ENST00000468421 RTCBQ9Y3I0 505 aaKnown RBP13.51□□□□□ -0.25
MSX1-202ENST00000468421 LRRFIP2Q9Y608 721 aaKnown RBP13.51□□□□□ -0.25
MSX1-202ENST00000468421 LAMB2P55268 1798 aa13.5□□□□□ -0.25
MSX1-202ENST00000468421 QSER1Q2KHR3 1735 aa13.5□□□□□ -0.25
MSX1-202ENST00000468421 GRM8O00222 908 aa13.5□□□□□ -0.25
MSX1-202ENST00000468421 GNAI2P04899 355 aa13.5□□□□□ -0.25
MSX1-202ENST00000468421 CEP85Q6P2H3 762 aa13.5□□□□□ -0.25
MSX1-202ENST00000468421 SIRT2Q8IXJ6 389 aa13.5□□□□□ -0.25
MSX1-202ENST00000468421 MYH3P11055 1940 aa13.5□□□□□ -0.25
MSX1-202ENST00000468421 A0A087WZG4 1122 aa13.49□□□□□ -0.25
MSX1-202ENST00000468421 EN1Q05925 392 aaPredicted RBP13.49□□□□□ -0.25
MSX1-202ENST00000468421 EZH2Q15910 746 aaKnown RBP13.49□□□□□ -0.25
MSX1-202ENST00000468421 ZNF827Q17R98 1081 aa13.49□□□□□ -0.25
MSX1-202ENST00000468421 ANKRD44Q8N8A2 993 aa13.49□□□□□ -0.25
MSX1-202ENST00000468421 JARID2Q92833 1246 aaPredicted RBP13.49□□□□□ -0.25
MSX1-202ENST00000468421 SUCLG2Q96I99 432 aa13.49□□□□□ -0.25
MSX1-202ENST00000468421 CAMKK2Q96RR4 588 aa13.49□□□□□ -0.25
MSX1-202ENST00000468421 CWC25Q9NXE8 425 aaPredicted RBP13.49□□□□□ -0.25
MSX1-202ENST00000468421 C9orf78Q9NZ63 289 aaPredicted RBP13.49□□□□□ -0.25
MSX1-202ENST00000468421 SRP68Q9UHB9 627 aaKnown RBP13.49□□□□□ -0.25
MSX1-202ENST00000468421 DDX60Q8IY21 1712 aaKnown RBP13.49□□□□□ -0.25
MSX1-202ENST00000468421 UBN2Q6ZU65 1347 aa13.48□□□□□ -0.25
MSX1-202ENST00000468421 PHF14O94880 888 aa13.48□□□□□ -0.25
MSX1-202ENST00000468421 GPTP24298 496 aa13.48□□□□□ -0.25
MSX1-202ENST00000468421 CASP7P55210 303 aa13.48□□□□□ -0.25
MSX1-202ENST00000468421 HDAC1Q13547 482 aaPredicted RBP13.48□□□□□ -0.25
MSX1-202ENST00000468421 HSP90AB3PQ58FF7 597 aa13.48□□□□□ -0.25
MSX1-202ENST00000468421 ZNF34Q8IZ26 560 aa13.48□□□□□ -0.25
MSX1-202ENST00000468421 CCDC191Q8NCU4 936 aa13.48□□□□□ -0.25
MSX1-202ENST00000468421 ARHGEF1Q92888 912 aaKnown RBP13.48□□□□□ -0.25
MSX1-202ENST00000468421 KAZALD1Q96I82 304 aa13.48□□□□□ -0.25
MSX1-202ENST00000468421 BCL2L12Q9HB09 334 aa13.48□□□□□ -0.25
Retrieved 100 of 20,778 RNA–protein pairs in 30.9 ms