RNA–Protein interactions for RNA: ENST00000467885.6

USP39-213, Transcript of ubiquitin specific peptidase 39, humanhuman

TSL 5

Gene USP39, Length 338 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP39-213ENST00000467885 PROSER3Q2NL68 480 aa7.64□□□□□ -1.19
USP39-213ENST00000467885 ARHGAP45Q92619 1136 aa7.64□□□□□ -1.19
USP39-213ENST00000467885 BCL2L13Q9BXK5 485 aa7.64□□□□□ -1.19
USP39-213ENST00000467885 CHMP4AQ9BY43 222 aa7.64□□□□□ -1.19
USP39-213ENST00000467885 PHAXQ9H814 394 aaKnown RBP7.64□□□□□ -1.19
USP39-213ENST00000467885 DDX21Q9NR30 783 aaKnown RBP eCLIP7.64□□□□□ -1.19
USP39-213ENST00000467885 LRRC4BQ9NT99 713 aa7.64□□□□□ -1.19
USP39-213ENST00000467885 DBF4Q9UBU7 674 aaPredicted RBP7.64□□□□□ -1.19
USP39-213ENST00000467885 TNNQ9UQP3 1299 aa7.64□□□□□ -1.19
USP39-213ENST00000467885 DLG5Q8TDM6 1919 aa7.64□□□□□ -1.19
USP39-213ENST00000467885 MRC1P22897 1456 aa7.63□□□□□ -1.19
USP39-213ENST00000467885 RGS12O14924 1447 aa7.63□□□□□ -1.19
USP39-213ENST00000467885 STARD3NLO95772 234 aa7.63□□□□□ -1.19
USP39-213ENST00000467885 APBA3O96018 575 aa7.63□□□□□ -1.19
USP39-213ENST00000467885 ANXA1P04083 346 aa7.63□□□□□ -1.19
USP39-213ENST00000467885 MKRN3Q13064 507 aaKnown RBP7.63□□□□□ -1.19
USP39-213ENST00000467885 C20orf194Q5TEA3 1177 aa7.63□□□□□ -1.19
USP39-213ENST00000467885 HDGFL1Q5TGJ6 251 aa7.63□□□□□ -1.19
USP39-213ENST00000467885 CHPF2Q9P2E5 772 aa7.63□□□□□ -1.19
USP39-213ENST00000467885 PARP4Q9UKK3 1724 aaKnown RBP7.63□□□□□ -1.19
USP39-213ENST00000467885 SHANK3Q9BYB0 1731 aa7.62□□□□□ -1.19
USP39-213ENST00000467885 IPO8O15397 1037 aaKnown RBP7.62□□□□□ -1.19
USP39-213ENST00000467885 CHRM1P11229 460 aaPredicted RBP7.62□□□□□ -1.19
USP39-213ENST00000467885 PIP4K2AP48426 406 aaPredicted RBP7.62□□□□□ -1.19
USP39-213ENST00000467885 VASPP50552 380 aaPredicted RBP7.62□□□□□ -1.19
USP39-213ENST00000467885 PDE3AQ14432 1141 aa7.62□□□□□ -1.19
USP39-213ENST00000467885 RC3H1Q5TC82 1133 aaKnown RBP7.62□□□□□ -1.19
USP39-213ENST00000467885 C3orf67Q6ZVT6 689 aa7.62□□□□□ -1.19
USP39-213ENST00000467885 COPS6Q7L5N1 327 aa7.62□□□□□ -1.19
USP39-213ENST00000467885 KLHL34Q8N239 644 aa7.62□□□□□ -1.19
USP39-213ENST00000467885 L3MBTL3Q96JM7 780 aaPredicted RBP7.62□□□□□ -1.19
USP39-213ENST00000467885 CAMKK2Q96RR4 588 aa7.62□□□□□ -1.19
USP39-213ENST00000467885 SMC4Q9NTJ3 1288 aa7.62□□□□□ -1.19
USP39-213ENST00000467885 HYPKQ9NX55 129 aa7.62□□□□□ -1.19
USP39-213ENST00000467885 RLBP1P12271 317 aa7.61□□□□□ -1.19
USP39-213ENST00000467885 CRKLP46109 303 aaKnown RBP7.61□□□□□ -1.19
USP39-213ENST00000467885 EIF5P55010 431 aaKnown RBP7.61□□□□□ -1.19
USP39-213ENST00000467885 RRP1P56182 461 aaKnown RBP7.61□□□□□ -1.19
USP39-213ENST00000467885 TXNRD1Q16881 649 aa7.61□□□□□ -1.19
USP39-213ENST00000467885 ZKSCAN2Q63HK3 967 aa7.61□□□□□ -1.19
USP39-213ENST00000467885 ATF7IPQ6VMQ6 1270 aa7.61□□□□□ -1.19
USP39-213ENST00000467885 LINC00116Q8NCU8 138 aa7.61□□□□□ -1.19
USP39-213ENST00000467885 FRAT1Q92837 279 aaPredicted RBP7.61□□□□□ -1.19
USP39-213ENST00000467885 STK31Q9BXU1 1019 aa7.61□□□□□ -1.19
USP39-213ENST00000467885 PALLDQ8WX93 1383 aa7.6□□□□□ -1.19
USP39-213ENST00000467885 LRRC37A3O60309 1634 aa7.6□□□□□ -1.19
USP39-213ENST00000467885 PI4KAP2A4QPH2 592 aa7.6□□□□□ -1.19
USP39-213ENST00000467885 RPS6KA4O75676 772 aa7.6□□□□□ -1.19
USP39-213ENST00000467885 TRIM27P14373 513 aa7.6□□□□□ -1.19
USP39-213ENST00000467885 MYL6BP14649 208 aa7.6□□□□□ -1.19
USP39-213ENST00000467885 CANXP27824 592 aaKnown RBP7.6□□□□□ -1.19
USP39-213ENST00000467885 PSEN1P49768 467 aa7.6□□□□□ -1.19
USP39-213ENST00000467885 FLIIQ13045 1269 aa7.6□□□□□ -1.19
USP39-213ENST00000467885 SLC27A3Q5K4L6 730 aa7.6□□□□□ -1.19
USP39-213ENST00000467885 TTLL7Q6ZT98 887 aa7.6□□□□□ -1.19
USP39-213ENST00000467885 ANKRD13DQ6ZTN6 518 aa7.6□□□□□ -1.19
USP39-213ENST00000467885 SMIM5Q71RC9 77 aa7.6□□□□□ -1.19
USP39-213ENST00000467885 CCDC125Q86Z20 511 aa7.6□□□□□ -1.19
USP39-213ENST00000467885 PI4KAP1Q8N8J0 262 aa7.6□□□□□ -1.19
USP39-213ENST00000467885 PANK1Q8TE04 598 aa7.6□□□□□ -1.19
USP39-213ENST00000467885 CCDC87Q9NVE4 849 aa7.6□□□□□ -1.19
USP39-213ENST00000467885 CCNL1Q9UK58 526 aaPredicted RBP7.6□□□□□ -1.19
USP39-213ENST00000467885 KCPQ6ZWJ8 1503 aa7.6□□□□□ -1.19
USP39-213ENST00000467885 SCN11AQ9UI33 1791 aa7.6□□□□□ -1.19
USP39-213ENST00000467885 ERBB4Q15303 1308 aa7.59□□□□□ -1.19
USP39-213ENST00000467885 F6X3S4 739 aa7.59□□□□□ -1.19
USP39-213ENST00000467885 ZBTB7BO15156 539 aaPredicted RBP7.59□□□□□ -1.19
USP39-213ENST00000467885 IL6STP40189 918 aaPredicted RBP7.59□□□□□ -1.19
USP39-213ENST00000467885 EMP3P54852 163 aa7.59□□□□□ -1.19
USP39-213ENST00000467885 EN1Q05925 392 aaPredicted RBP7.59□□□□□ -1.19
USP39-213ENST00000467885 AIMP1Q12904 312 aaKnown RBP7.59□□□□□ -1.19
USP39-213ENST00000467885 INTS3Q68E01 1043 aaKnown RBP7.59□□□□□ -1.19
USP39-213ENST00000467885 KSR2Q6VAB6 950 aa7.59□□□□□ -1.19
USP39-213ENST00000467885 ILDR2Q71H61 639 aa7.59□□□□□ -1.19
USP39-213ENST00000467885 AMIGO3Q86WK7 504 aa7.59□□□□□ -1.19
USP39-213ENST00000467885 DZIP1LQ8IYY4 767 aaKnown RBP7.59□□□□□ -1.19
USP39-213ENST00000467885 GOLGA6L2Q8N9W4 650 aaPredicted RBP7.59□□□□□ -1.19
USP39-213ENST00000467885 XAGE3Q8WTP9 111 aa7.59□□□□□ -1.19
USP39-213ENST00000467885 CLUAP1Q96AJ1 413 aa7.59□□□□□ -1.19
USP39-213ENST00000467885 API5Q9BZZ5 524 aaKnown RBP7.59□□□□□ -1.19
USP39-213ENST00000467885 ZBTB1Q9Y2K1 713 aa7.59□□□□□ -1.19
USP39-213ENST00000467885 PTPRCP08575 1304 aa7.58□□□□□ -1.2
USP39-213ENST00000467885 IRX6P78412 446 aaPredicted RBP7.58□□□□□ -1.2
USP39-213ENST00000467885 EZH2Q15910 746 aaKnown RBP7.58□□□□□ -1.2
USP39-213ENST00000467885 BEND3Q5T5X7 828 aa7.58□□□□□ -1.2
USP39-213ENST00000467885 DEFB132Q7Z7B7 95 aa7.58□□□□□ -1.2
USP39-213ENST00000467885 PLBD2Q8NHP8 589 aa7.58□□□□□ -1.2
USP39-213ENST00000467885 ARHGEF1Q92888 912 aaKnown RBP7.58□□□□□ -1.2
USP39-213ENST00000467885 UPF1Q92900 1129 aaKnown RBP eCLIP7.58□□□□□ -1.2
USP39-213ENST00000467885 TBC1D2BQ9UPU7 963 aa7.58□□□□□ -1.2
USP39-213ENST00000467885 TOGARAM1Q9Y4F4 1720 aa7.58□□□□□ -1.2
USP39-213ENST00000467885 SIPA1L3O60292 1781 aaPredicted RBP7.57□□□□□ -1.2
USP39-213ENST00000467885 POTEB3A0JP26 581 aa7.57□□□□□ -1.2
USP39-213ENST00000467885 ERVV-1B6SEH8 477 aa7.57□□□□□ -1.2
USP39-213ENST00000467885 MS4A1P11836 297 aa7.57□□□□□ -1.2
USP39-213ENST00000467885 TRIM28Q13263 835 aaKnown RBP7.57□□□□□ -1.2
USP39-213ENST00000467885 FKBP5Q13451 457 aaPredicted RBP7.57□□□□□ -1.2
USP39-213ENST00000467885 HLFQ16534 295 aa7.57□□□□□ -1.2
USP39-213ENST00000467885 POTEBQ6S5H4 581 aa7.57□□□□□ -1.2
USP39-213ENST00000467885 TMEM57Q8N5G2 664 aa7.57□□□□□ -1.2
Retrieved 100 of 20,778 RNA–protein pairs in 22.2 ms