RNA–Protein interactions for RNA: ENST00000467182.1

COL4A1-202, Transcript of collagen type IV alpha 1 chain, humanhuman

TSL 3

Gene COL4A1, Length 593 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL4A1-202ENST00000467182 RIC3Q7Z5B4 369 aa16.4■□□□□ 0.22
COL4A1-202ENST00000467182 LINC00116Q8NCU8 138 aa16.4■□□□□ 0.22
COL4A1-202ENST00000467182 USP44Q9H0E7 712 aa16.4■□□□□ 0.22
COL4A1-202ENST00000467182 C1orf115Q9H7X2 142 aa16.4■□□□□ 0.22
COL4A1-202ENST00000467182 ALDH1L1O75891 902 aa16.39■□□□□ 0.21
COL4A1-202ENST00000467182 IL6STP40189 918 aaPredicted RBP16.39■□□□□ 0.21
COL4A1-202ENST00000467182 CRKLP46109 303 aaKnown RBP16.39■□□□□ 0.21
COL4A1-202ENST00000467182 LINS1Q8NG48 757 aa16.39■□□□□ 0.21
COL4A1-202ENST00000467182 CCDC87Q9NVE4 849 aa16.39■□□□□ 0.21
COL4A1-202ENST00000467182 EIF5P55010 431 aaKnown RBP16.38■□□□□ 0.21
COL4A1-202ENST00000467182 HDAC1Q13547 482 aaPredicted RBP16.38■□□□□ 0.21
COL4A1-202ENST00000467182 CWF19L2Q2TBE0 894 aaKnown RBP16.38■□□□□ 0.21
COL4A1-202ENST00000467182 CENPQQ7L2Z9 268 aaPredicted RBP16.38■□□□□ 0.21
COL4A1-202ENST00000467182 SIRT2Q8IXJ6 389 aa16.38■□□□□ 0.21
COL4A1-202ENST00000467182 ANKRD36CQ5JPF3 1778 aa16.38■□□□□ 0.21
COL4A1-202ENST00000467182 BCORQ6W2J9 1755 aa16.37■□□□□ 0.21
COL4A1-202ENST00000467182 NEURL1BA8MQ27 555 aa16.37■□□□□ 0.21
COL4A1-202ENST00000467182 TRIM37O94972 964 aa16.37■□□□□ 0.21
COL4A1-202ENST00000467182 KCNQ4P56696 695 aa16.37■□□□□ 0.21
COL4A1-202ENST00000467182 MYD88Q99836 296 aa16.37■□□□□ 0.21
COL4A1-202ENST00000467182 CNTNAP4Q9C0A0 1308 aa16.37■□□□□ 0.21
COL4A1-202ENST00000467182 C4BP0C0L5 1744 aa16.36■□□□□ 0.21
COL4A1-202ENST00000467182 NUP98P52948 1817 aa16.36■□□□□ 0.21
COL4A1-202ENST00000467182 UTYO14607 1347 aa16.36■□□□□ 0.21
COL4A1-202ENST00000467182 GNAI3P08754 354 aa16.35■□□□□ 0.21
COL4A1-202ENST00000467182 NBPF7P0C2Y1 421 aaPredicted RBP16.35■□□□□ 0.21
COL4A1-202ENST00000467182 RC3H1Q5TC82 1133 aaKnown RBP16.35■□□□□ 0.21
COL4A1-202ENST00000467182 CEP85Q6P2H3 762 aa16.35■□□□□ 0.21
COL4A1-202ENST00000467182 ANKRD44Q8N8A2 993 aa16.35■□□□□ 0.21
COL4A1-202ENST00000467182 ZBTB3Q9H5J0 574 aa16.35■□□□□ 0.21
COL4A1-202ENST00000467182 CCNL1Q9UK58 526 aaPredicted RBP16.35■□□□□ 0.21
COL4A1-202ENST00000467182 MAP3K15Q6ZN16 1313 aa16.35■□□□□ 0.21
COL4A1-202ENST00000467182 RGPD3A6NKT7 1758 aaPredicted RBP16.34■□□□□ 0.21
COL4A1-202ENST00000467182 RGPD4Q7Z3J3 1758 aa16.34■□□□□ 0.21
COL4A1-202ENST00000467182 ILDR1Q86SU0 546 aaPredicted RBP16.34■□□□□ 0.21
COL4A1-202ENST00000467182 RWDD1Q9H446 243 aaPredicted RBP16.34■□□□□ 0.21
COL4A1-202ENST00000467182 LRRC4BQ9NT99 713 aa16.34■□□□□ 0.21
COL4A1-202ENST00000467182 GNAI2P04899 355 aa16.33■□□□□ 0.2
COL4A1-202ENST00000467182 NEXNQ0ZGT2 675 aa16.33■□□□□ 0.2
COL4A1-202ENST00000467182 GCKRQ14397 625 aa16.33■□□□□ 0.2
COL4A1-202ENST00000467182 KIF6Q6ZMV9 814 aa16.33■□□□□ 0.2
COL4A1-202ENST00000467182 RPAP2Q8IXW5 612 aaPredicted RBP16.33■□□□□ 0.2
COL4A1-202ENST00000467182 ISCA1Q9BUE6 129 aa16.33■□□□□ 0.2
COL4A1-202ENST00000467182 ZNF330Q9Y3S2 320 aaPredicted RBP16.33■□□□□ 0.2
COL4A1-202ENST00000467182 LRRFIP2Q9Y608 721 aaKnown RBP16.33■□□□□ 0.2
COL4A1-202ENST00000467182 COL15A1P39059 1388 aa16.33■□□□□ 0.2
COL4A1-202ENST00000467182 SCN7AQ01118 1682 aa16.33■□□□□ 0.2
COL4A1-202ENST00000467182 ERVV-1B6SEH8 477 aa16.32■□□□□ 0.2
COL4A1-202ENST00000467182 UBTFL1P0CB47 393 aaPredicted RBP16.32■□□□□ 0.2
COL4A1-202ENST00000467182 HLFQ16534 295 aa16.32■□□□□ 0.2
COL4A1-202ENST00000467182 GIGYF2Q6Y7W6 1299 aaKnown RBP16.32■□□□□ 0.2
COL4A1-202ENST00000467182 DZIP3Q86Y13 1208 aaKnown RBP16.32■□□□□ 0.2
COL4A1-202ENST00000467182 EP400Q96L91 3159 aa16.31■□□□□ 0.2
COL4A1-202ENST00000467182 ATP5J2-PTCD1G3V325 749 aa16.31■□□□□ 0.2
COL4A1-202ENST00000467182 GRM8O00222 908 aa16.31■□□□□ 0.2
COL4A1-202ENST00000467182 CASP7P55210 303 aa16.31■□□□□ 0.2
COL4A1-202ENST00000467182 TCIRG1Q13488 830 aa16.31■□□□□ 0.2
COL4A1-202ENST00000467182 SMC5Q8IY18 1101 aa16.31■□□□□ 0.2
COL4A1-202ENST00000467182 PROM2Q8N271 834 aa16.31■□□□□ 0.2
COL4A1-202ENST00000467182 KAZALD1Q96I82 304 aa16.31■□□□□ 0.2
COL4A1-202ENST00000467182 TBC1D2BQ9UPU7 963 aa16.31■□□□□ 0.2
COL4A1-202ENST00000467182 UBR3Q6ZT12 1888 aa16.31■□□□□ 0.2
COL4A1-202ENST00000467182 C4AP0C0L4 1744 aa16.31■□□□□ 0.2
COL4A1-202ENST00000467182 PLSCR1O15162 318 aa16.3■□□□□ 0.2
COL4A1-202ENST00000467182 RPS6KA4O75676 772 aa16.3■□□□□ 0.2
COL4A1-202ENST00000467182 CAMTA2O94983 1202 aa16.3■□□□□ 0.2
COL4A1-202ENST00000467182 TRIM28Q13263 835 aaKnown RBP16.3■□□□□ 0.2
COL4A1-202ENST00000467182 SLC27A3Q5K4L6 730 aa16.3■□□□□ 0.2
COL4A1-202ENST00000467182 H7C1W4 665 aa16.29■□□□□ 0.2
COL4A1-202ENST00000467182 ATP8B2P98198 1209 aa16.29■□□□□ 0.2
COL4A1-202ENST00000467182 AMIGO3Q86WK7 504 aa16.29■□□□□ 0.2
COL4A1-202ENST00000467182 SKAP1Q86WV1 359 aa16.29■□□□□ 0.2
COL4A1-202ENST00000467182 SUCLG2Q96I99 432 aa16.29■□□□□ 0.2
COL4A1-202ENST00000467182 C9orf78Q9NZ63 289 aaPredicted RBP16.29■□□□□ 0.2
COL4A1-202ENST00000467182 PNMA6EA0A0J9YXQ4 647 aa16.28■□□□□ 0.2
COL4A1-202ENST00000467182 CCDC191Q8NCU4 936 aa16.28■□□□□ 0.2
COL4A1-202ENST00000467182 CWC25Q9NXE8 425 aaPredicted RBP16.28■□□□□ 0.2
COL4A1-202ENST00000467182 A0A087WZG4 1122 aa16.27■□□□□ 0.2
COL4A1-202ENST00000467182 MTX1Q13505 466 aa16.27■□□□□ 0.2
COL4A1-202ENST00000467182 TXNRD1Q16881 649 aa16.27■□□□□ 0.2
COL4A1-202ENST00000467182 SMIM5Q71RC9 77 aa16.27■□□□□ 0.2
COL4A1-202ENST00000467182 ZNF34Q8IZ26 560 aa16.27■□□□□ 0.2
COL4A1-202ENST00000467182 DCTPP1Q9H773 170 aa16.27■□□□□ 0.2
COL4A1-202ENST00000467182 APBA3O96018 575 aa16.26■□□□□ 0.19
COL4A1-202ENST00000467182 POLA2Q14181 598 aa16.26■□□□□ 0.19
COL4A1-202ENST00000467182 HSP90AB3PQ58FF7 597 aa16.26■□□□□ 0.19
COL4A1-202ENST00000467182 SSH3Q8TE77 659 aa16.26■□□□□ 0.19
COL4A1-202ENST00000467182 JARID2Q92833 1246 aaPredicted RBP16.26■□□□□ 0.19
COL4A1-202ENST00000467182 PDZRN3Q9UPQ7 1066 aa16.26■□□□□ 0.19
COL4A1-202ENST00000467182 TUBGCP6Q96RT7 1819 aa16.26■□□□□ 0.19
COL4A1-202ENST00000467182 UBN2Q6ZU65 1347 aa16.25■□□□□ 0.19
COL4A1-202ENST00000467182 RGL2O15211 777 aa16.25■□□□□ 0.19
COL4A1-202ENST00000467182 GNPATO15228 680 aa16.25■□□□□ 0.19
COL4A1-202ENST00000467182 EPHA10Q5JZY3 1008 aa16.25■□□□□ 0.19
COL4A1-202ENST00000467182 NLRP10Q86W26 655 aa16.25■□□□□ 0.19
COL4A1-202ENST00000467182 GCC1Q96CN9 775 aa16.25■□□□□ 0.19
COL4A1-202ENST00000467182 ARXQ96QS3 562 aa16.25■□□□□ 0.19
COL4A1-202ENST00000467182 BCL2L12Q9HB09 334 aa16.25■□□□□ 0.19
COL4A1-202ENST00000467182 RABL6Q3YEC7 729 aaPredicted RBP16.24■□□□□ 0.19
COL4A1-202ENST00000467182 UBE3BQ7Z3V4 1068 aa16.24■□□□□ 0.19
Retrieved 100 of 20,778 RNA–protein pairs in 19.9 ms