RNA–Protein interactions for RNA: ENST00000467114.2

PRPF40A-205, Transcript of pre-mRNA processing factor 40 homolog A, humanhuman

TSL 4

Gene PRPF40A, Length 546 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PRPF40A-205ENST00000467114 PIK3R2O00459 728 aa9.73□□□□□ -0.85
PRPF40A-205ENST00000467114 POTEAQ6S8J7 498 aa9.73□□□□□ -0.85
PRPF40A-205ENST00000467114 FNBP4Q8N3X1 1017 aaPredicted RBP9.73□□□□□ -0.85
PRPF40A-205ENST00000467114 OGFOD1Q8N543 542 aa9.73□□□□□ -0.85
PRPF40A-205ENST00000467114 MKRN1Q9UHC7 482 aaKnown RBP9.73□□□□□ -0.85
PRPF40A-205ENST00000467114 PALM3A6NDB9 673 aaPredicted RBP9.72□□□□□ -0.85
PRPF40A-205ENST00000467114 GNB5O14775 395 aa9.72□□□□□ -0.85
PRPF40A-205ENST00000467114 SH3PXD2AQ5TCZ1 1133 aa9.72□□□□□ -0.85
PRPF40A-205ENST00000467114 SIX5Q8N196 739 aa9.72□□□□□ -0.85
PRPF40A-205ENST00000467114 SUV39H2Q9H5I1 410 aa9.72□□□□□ -0.85
PRPF40A-205ENST00000467114 ZNF232Q9UNY5 417 aa9.72□□□□□ -0.85
PRPF40A-205ENST00000467114 DKK1O94907 266 aa9.71□□□□□ -0.86
PRPF40A-205ENST00000467114 HIRAP54198 1017 aaPredicted RBP9.71□□□□□ -0.86
PRPF40A-205ENST00000467114 PSMA6P60900 246 aaKnown RBP9.71□□□□□ -0.86
PRPF40A-205ENST00000467114 LRRC69Q6ZNQ3 347 aa9.71□□□□□ -0.86
PRPF40A-205ENST00000467114 CHSY3Q70JA7 882 aa9.71□□□□□ -0.86
PRPF40A-205ENST00000467114 TSPAN10Q9H1Z9 355 aaPredicted RBP9.71□□□□□ -0.86
PRPF40A-205ENST00000467114 PRR12Q9ULL5 1215 aa9.71□□□□□ -0.86
PRPF40A-205ENST00000467114 C1orf53Q5VUE5 145 aa9.7□□□□□ -0.86
PRPF40A-205ENST00000467114 CLUAP1Q96AJ1 413 aa9.7□□□□□ -0.86
PRPF40A-205ENST00000467114 PCBP4P57723 403 aaKnown RBP9.69□□□□□ -0.86
PRPF40A-205ENST00000467114 PROSER2Q86WR7 435 aaPredicted RBP9.69□□□□□ -0.86
PRPF40A-205ENST00000467114 GRIN2CQ14957 1233 aa9.68□□□□□ -0.86
PRPF40A-205ENST00000467114 RHPN1Q8TCX5 695 aa9.68□□□□□ -0.86
PRPF40A-205ENST00000467114 GLMNQ92990 594 aa9.68□□□□□ -0.86
PRPF40A-205ENST00000467114 MDFIQ99750 246 aa9.68□□□□□ -0.86
PRPF40A-205ENST00000467114 NEUROD4Q9HD90 331 aa9.68□□□□□ -0.86
PRPF40A-205ENST00000467114 TSEN2Q8NCE0 465 aaKnown RBP9.67□□□□□ -0.86
PRPF40A-205ENST00000467114 ZNF594Q96JF6 807 aaPredicted RBP9.67□□□□□ -0.86
PRPF40A-205ENST00000467114 NOP53Q9NZM5 478 aaKnown RBP9.67□□□□□ -0.86
PRPF40A-205ENST00000467114 CHMP3Q9Y3E7 222 aa9.67□□□□□ -0.86
PRPF40A-205ENST00000467114 SYT9Q86SS6 491 aa9.66□□□□□ -0.86
PRPF40A-205ENST00000467114 TFIP11Q9UBB9 837 aaKnown RBP9.66□□□□□ -0.86
PRPF40A-205ENST00000467114 MAFBQ9Y5Q3 323 aaPredicted RBP9.66□□□□□ -0.86
PRPF40A-205ENST00000467114 ELOA3CA0A087WX78 387 aaPredicted RBP9.65□□□□□ -0.86
PRPF40A-205ENST00000467114 ELOA3DA6NLF2 546 aaPredicted RBP9.65□□□□□ -0.86
PRPF40A-205ENST00000467114 SFI1A8K8P3 1242 aa9.65□□□□□ -0.86
PRPF40A-205ENST00000467114 C21orf2O43822 256 aa9.65□□□□□ -0.86
PRPF40A-205ENST00000467114 ADAM23O75077 832 aa9.65□□□□□ -0.86
PRPF40A-205ENST00000467114 SIN3BO75182 1162 aa9.65□□□□□ -0.86
PRPF40A-205ENST00000467114 SFSWAPQ12872 951 aaKnown RBP9.65□□□□□ -0.86
PRPF40A-205ENST00000467114 ELOA3BQ3SY89 546 aa9.65□□□□□ -0.86
PRPF40A-205ENST00000467114 ELOA3Q8NG57 546 aa9.65□□□□□ -0.86
PRPF40A-205ENST00000467114 PHACTR1Q9C0D0 580 aa9.65□□□□□ -0.86
PRPF40A-205ENST00000467114 ANKIB1Q9P2G1 1089 aa9.65□□□□□ -0.86
PRPF40A-205ENST00000467114 HCN4Q9Y3Q4 1203 aa9.65□□□□□ -0.86
PRPF40A-205ENST00000467114 RBM19Q9Y4C8 960 aaKnown RBP9.65□□□□□ -0.86
PRPF40A-205ENST00000467114 STAG2Q8N3U4 1231 aa9.64□□□□□ -0.87
PRPF40A-205ENST00000467114 ADARB2-AS1A8MUL3 147 aa9.63□□□□□ -0.87
PRPF40A-205ENST00000467114 RASA1P20936 1047 aa9.63□□□□□ -0.87
PRPF40A-205ENST00000467114 KCNQ4P56696 695 aa9.63□□□□□ -0.87
PRPF40A-205ENST00000467114 GAS2L2Q8NHY3 880 aa9.63□□□□□ -0.87
PRPF40A-205ENST00000467114 HSH2DQ96JZ2 352 aa9.63□□□□□ -0.87
PRPF40A-205ENST00000467114 ATAD2Q6PL18 1390 aa9.63□□□□□ -0.87
PRPF40A-205ENST00000467114 A6NJR5 290 aa9.62□□□□□ -0.87
PRPF40A-205ENST00000467114 PPP1R12BO60237 982 aaPredicted RBP9.62□□□□□ -0.87
PRPF40A-205ENST00000467114 ALAS2P22557 587 aa9.62□□□□□ -0.87
PRPF40A-205ENST00000467114 SEC13P55735 322 aa9.62□□□□□ -0.87
PRPF40A-205ENST00000467114 TNFRSF25Q93038 417 aa9.62□□□□□ -0.87
PRPF40A-205ENST00000467114 TRIM11Q96F44 468 aa9.62□□□□□ -0.87
PRPF40A-205ENST00000467114 SLC30A3Q99726 388 aa9.62□□□□□ -0.87
PRPF40A-205ENST00000467114 C2orf49Q9BVC5 232 aaPredicted RBP9.62□□□□□ -0.87
PRPF40A-205ENST00000467114 C1QTNF9BB2RNN3 333 aa9.61□□□□□ -0.87
PRPF40A-205ENST00000467114 BAG6P46379 1132 aa9.61□□□□□ -0.87
PRPF40A-205ENST00000467114 ZNF280CQ8ND82 737 aa9.61□□□□□ -0.87
PRPF40A-205ENST00000467114 SUSD3Q96L08 255 aa9.61□□□□□ -0.87
PRPF40A-205ENST00000467114 PPP1R12CQ9BZL4 782 aa9.61□□□□□ -0.87
PRPF40A-205ENST00000467114 BRD7Q9NPI1 651 aa9.61□□□□□ -0.87
PRPF40A-205ENST00000467114 TYRO3Q06418 890 aa9.6□□□□□ -0.87
PRPF40A-205ENST00000467114 SPEM2Q0P670 501 aa9.6□□□□□ -0.87
PRPF40A-205ENST00000467114 CD163Q86VB7 1156 aa9.6□□□□□ -0.87
PRPF40A-205ENST00000467114 ALDH16A1Q8IZ83 802 aa9.6□□□□□ -0.87
PRPF40A-205ENST00000467114 CEP63Q96MT8 703 aa9.6□□□□□ -0.87
PRPF40A-205ENST00000467114 KANK4Q5T7N3 995 aaPredicted RBP9.59□□□□□ -0.87
PRPF40A-205ENST00000467114 SCG3Q8WXD2 468 aaKnown RBP9.59□□□□□ -0.87
PRPF40A-205ENST00000467114 CALR3Q96L12 384 aaKnown RBP9.59□□□□□ -0.87
PRPF40A-205ENST00000467114 CHRNA4P43681 627 aa9.58□□□□□ -0.88
PRPF40A-205ENST00000467114 PTK7Q13308 1070 aa9.58□□□□□ -0.88
PRPF40A-205ENST00000467114 NEUROD1Q13562 356 aa9.58□□□□□ -0.88
PRPF40A-205ENST00000467114 LARP1Q6PKG0 1096 aaKnown RBP9.58□□□□□ -0.88
PRPF40A-205ENST00000467114 PLVAPQ9BX97 442 aa9.58□□□□□ -0.88
PRPF40A-205ENST00000467114 KCNH4Q9UQ05 1017 aa9.58□□□□□ -0.88
PRPF40A-205ENST00000467114 HIF1AQ16665 826 aa9.57□□□□□ -0.88
PRPF40A-205ENST00000467114 CRTC2Q53ET0 693 aaPredicted RBP9.57□□□□□ -0.88
PRPF40A-205ENST00000467114 PRDM6Q9NQX0 595 aa9.57□□□□□ -0.88
PRPF40A-205ENST00000467114 STARD13Q9Y3M8 1113 aa9.57□□□□□ -0.88
PRPF40A-205ENST00000467114 K7ELQ4 463 aaPredicted RBP9.56□□□□□ -0.88
PRPF40A-205ENST00000467114 FAM196BA6NMK8 535 aa9.55□□□□□ -0.88
PRPF40A-205ENST00000467114 SPATA31C1P0DKV0 1188 aa9.55□□□□□ -0.88
PRPF40A-205ENST00000467114 DPYDQ12882 1025 aa9.55□□□□□ -0.88
PRPF40A-205ENST00000467114 COL9A3Q14050 684 aaPredicted RBP9.55□□□□□ -0.88
PRPF40A-205ENST00000467114 BTLAQ7Z6A9 289 aa9.55□□□□□ -0.88
PRPF40A-205ENST00000467114 RAB44Q7Z6P3 723 aaPredicted RBP9.55□□□□□ -0.88
PRPF40A-205ENST00000467114 GTF3C3Q9Y5Q9 886 aa9.55□□□□□ -0.88
PRPF40A-205ENST00000467114 USP17L15C9J2P7 530 aa9.54□□□□□ -0.88
PRPF40A-205ENST00000467114 USP17L10C9JJH3 530 aa9.54□□□□□ -0.88
PRPF40A-205ENST00000467114 USP17L13C9JLJ4 530 aa9.54□□□□□ -0.88
PRPF40A-205ENST00000467114 USP17L12C9JPN9 530 aa9.54□□□□□ -0.88
PRPF40A-205ENST00000467114 USP17L11C9JVI0 530 aa9.54□□□□□ -0.88
PRPF40A-205ENST00000467114 USP17L21D6R901 530 aa9.54□□□□□ -0.88
Retrieved 100 of 20,778 RNA–protein pairs in 11.2 ms