RNA–Protein interactions for RNA: ENST00000466438.1

HMGXB4-206, Transcript of HMG-box containing 4, humanhuman

TSL 3

Gene HMGXB4, Length 575 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGXB4-206ENST00000466438 CACNA1SQ13698 1873 aa20.3■□□□□ 0.84
HMGXB4-206ENST00000466438 TBC1D9BQ66K14 1250 aa20.3■□□□□ 0.84
HMGXB4-206ENST00000466438 PAXIP1Q6ZW49 1069 aaPredicted RBP20.3■□□□□ 0.84
HMGXB4-206ENST00000466438 CCDC24Q8N4L8 307 aa20.29■□□□□ 0.84
HMGXB4-206ENST00000466438 TSKSQ9UJT2 592 aa20.29■□□□□ 0.84
HMGXB4-206ENST00000466438 RNF123Q5XPI4 1314 aa20.28■□□□□ 0.84
HMGXB4-206ENST00000466438 SRGNP10124 158 aa20.28■□□□□ 0.84
HMGXB4-206ENST00000466438 CYP4F22Q6NT55 531 aa20.28■□□□□ 0.84
HMGXB4-206ENST00000466438 SLC52A2Q9HAB3 445 aa20.28■□□□□ 0.84
HMGXB4-206ENST00000466438 SCN7AQ01118 1682 aa20.28■□□□□ 0.84
HMGXB4-206ENST00000466438 MRC1P22897 1456 aa20.27■□□□□ 0.84
HMGXB4-206ENST00000466438 A0A087WZG4 1122 aa20.27■□□□□ 0.84
HMGXB4-206ENST00000466438 CA12O43570 354 aa20.27■□□□□ 0.84
HMGXB4-206ENST00000466438 CANXP27824 592 aaKnown RBP20.27■□□□□ 0.84
HMGXB4-206ENST00000466438 GRM1Q13255 1194 aa20.27■□□□□ 0.84
HMGXB4-206ENST00000466438 CCDC93Q567U6 631 aa20.27■□□□□ 0.84
HMGXB4-206ENST00000466438 MASTLQ96GX5 879 aa20.27■□□□□ 0.84
HMGXB4-206ENST00000466438 MAP2K2P36507 400 aa20.26■□□□□ 0.83
HMGXB4-206ENST00000466438 EIF5P55010 431 aaKnown RBP20.26■□□□□ 0.83
HMGXB4-206ENST00000466438 AEBP1Q8IUX7 1158 aa20.26■□□□□ 0.83
HMGXB4-206ENST00000466438 VSIG10Q8N0Z9 540 aa20.26■□□□□ 0.83
HMGXB4-206ENST00000466438 C7orf43Q8WVR3 580 aa20.26■□□□□ 0.83
HMGXB4-206ENST00000466438 TNNT2P45379 298 aaPredicted RBP20.25■□□□□ 0.83
HMGXB4-206ENST00000466438 FKBP4Q02790 459 aaKnown RBP eCLIP20.25■□□□□ 0.83
HMGXB4-206ENST00000466438 SLC39A6Q13433 755 aa20.25■□□□□ 0.83
HMGXB4-206ENST00000466438 CNBD1Q8NA66 436 aa20.25■□□□□ 0.83
HMGXB4-206ENST00000466438 ZNF277Q9NRM2 450 aaPredicted RBP20.24■□□□□ 0.83
HMGXB4-206ENST00000466438 NPHP1O15259 732 aa20.23■□□□□ 0.83
HMGXB4-206ENST00000466438 ST5P78524 1137 aa20.23■□□□□ 0.83
HMGXB4-206ENST00000466438 DGKZQ13574 1117 aa20.23■□□□□ 0.83
HMGXB4-206ENST00000466438 AKAP4Q5JQC9 854 aa20.23■□□□□ 0.83
HMGXB4-206ENST00000466438 GPC2Q8N158 579 aa20.23■□□□□ 0.83
HMGXB4-206ENST00000466438 FZD9O00144 591 aa20.22■□□□□ 0.83
HMGXB4-206ENST00000466438 PRPF38BQ5VTL8 546 aaKnown RBP20.22■□□□□ 0.83
HMGXB4-206ENST00000466438 TLL2Q9Y6L7 1015 aa20.22■□□□□ 0.83
HMGXB4-206ENST00000466438 CASP8AP2Q9UKL3 1982 aa20.21■□□□□ 0.83
HMGXB4-206ENST00000466438 AOC2O75106 756 aa20.21■□□□□ 0.83
HMGXB4-206ENST00000466438 STARD3NLO95772 234 aa20.21■□□□□ 0.83
HMGXB4-206ENST00000466438 FMR1Q06787 632 aaKnown RBP eCLIP20.21■□□□□ 0.83
HMGXB4-206ENST00000466438 TRPM7Q96QT4 1865 aa20.21■□□□□ 0.83
HMGXB4-206ENST00000466438 CST9Q5W186 159 aa20.2■□□□□ 0.82
HMGXB4-206ENST00000466438 SULT6B1Q6IMI4 303 aa20.2■□□□□ 0.82
HMGXB4-206ENST00000466438 SETDB2Q96T68 719 aa20.2■□□□□ 0.82
HMGXB4-206ENST00000466438 LGR6Q9HBX8 967 aa20.2■□□□□ 0.82
HMGXB4-206ENST00000466438 UBR2Q8IWV8 1755 aa20.2■□□□□ 0.82
HMGXB4-206ENST00000466438 BRPF1P55201 1214 aaPredicted RBP20.19■□□□□ 0.82
HMGXB4-206ENST00000466438 RTKN2Q8IZC4 609 aa20.19■□□□□ 0.82
HMGXB4-206ENST00000466438 IARSP41252 1262 aaKnown RBP20.18■□□□□ 0.82
HMGXB4-206ENST00000466438 TBC1D2BQ9UPU7 963 aa20.18■□□□□ 0.82
HMGXB4-206ENST00000466438 RNMTO43148 476 aaKnown RBP20.17■□□□□ 0.82
HMGXB4-206ENST00000466438 NPR1P16066 1061 aa20.17■□□□□ 0.82
HMGXB4-206ENST00000466438 LMOD1P29536 600 aaPredicted RBP20.17■□□□□ 0.82
HMGXB4-206ENST00000466438 TRAF5O00463 557 aa20.15■□□□□ 0.82
HMGXB4-206ENST00000466438 IL6STP40189 918 aaPredicted RBP20.15■□□□□ 0.82
HMGXB4-206ENST00000466438 ZNF330Q9Y3S2 320 aaPredicted RBP20.15■□□□□ 0.82
HMGXB4-206ENST00000466438 BCORQ6W2J9 1755 aa20.14■□□□□ 0.81
HMGXB4-206ENST00000466438 CAMTA2O94983 1202 aa20.14■□□□□ 0.81
HMGXB4-206ENST00000466438 SOX10P56693 466 aa20.14■□□□□ 0.81
HMGXB4-206ENST00000466438 OLFM4Q6UX06 510 aa20.14■□□□□ 0.81
HMGXB4-206ENST00000466438 SAPCD2Q86UD0 394 aa20.14■□□□□ 0.81
HMGXB4-206ENST00000466438 JDP2Q8WYK2 163 aa20.14■□□□□ 0.81
HMGXB4-206ENST00000466438 HHIPL1Q96JK4 782 aa20.14■□□□□ 0.81
HMGXB4-206ENST00000466438 EIF6P56537 245 aaKnown RBP20.13■□□□□ 0.81
HMGXB4-206ENST00000466438 USP50Q70EL3 339 aaPredicted RBP20.13■□□□□ 0.81
HMGXB4-206ENST00000466438 SYNE4Q8N205 404 aa20.13■□□□□ 0.81
HMGXB4-206ENST00000466438 GJA3Q9Y6H8 435 aa20.13■□□□□ 0.81
HMGXB4-206ENST00000466438 KLRG2A4D1S0 409 aaPredicted RBP20.12■□□□□ 0.81
HMGXB4-206ENST00000466438 EPS15P42566 896 aa20.12■□□□□ 0.81
HMGXB4-206ENST00000466438 SCNN1DP51172 638 aa20.12■□□□□ 0.81
HMGXB4-206ENST00000466438 TTC5Q8N0Z6 440 aa20.12■□□□□ 0.81
HMGXB4-206ENST00000466438 NPM2Q86SE8 214 aaKnown RBP20.11■□□□□ 0.81
HMGXB4-206ENST00000466438 PSMD1Q99460 953 aa20.11■□□□□ 0.81
HMGXB4-206ENST00000466438 TEX13AQ9BXU3 409 aaPredicted RBP20.11■□□□□ 0.81
HMGXB4-206ENST00000466438 SNED1Q8TER0 1413 aa20.1■□□□□ 0.81
HMGXB4-206ENST00000466438 CIAPIN1Q6FI81 312 aa20.1■□□□□ 0.81
HMGXB4-206ENST00000466438 NBPF5PQ86XG9 351 aaPredicted RBP20.1■□□□□ 0.81
HMGXB4-206ENST00000466438 HEG1Q9ULI3 1381 aa20.09■□□□□ 0.81
HMGXB4-206ENST00000466438 CELF2O95319 508 aaKnown RBP20.09■□□□□ 0.81
HMGXB4-206ENST00000466438 COL4A5P29400 1685 aa20.09■□□□□ 0.81
HMGXB4-206ENST00000466438 IL13P35225 146 aa20.08■□□□□ 0.81
HMGXB4-206ENST00000466438 ZNF496Q96IT1 587 aaPredicted RBP20.08■□□□□ 0.81
HMGXB4-206ENST00000466438 ALDH1B1P30837 517 aa20.07■□□□□ 0.8
HMGXB4-206ENST00000466438 DZIP3Q86Y13 1208 aaKnown RBP20.07■□□□□ 0.8
HMGXB4-206ENST00000466438 NOGQ13253 232 aa20.06■□□□□ 0.8
HMGXB4-206ENST00000466438 NCBP3Q53F19 620 aaKnown RBP20.06■□□□□ 0.8
HMGXB4-206ENST00000466438 CLEC4GQ6UXB4 293 aa20.05■□□□□ 0.8
HMGXB4-206ENST00000466438 A1BGP04217 495 aa20.04■□□□□ 0.8
HMGXB4-206ENST00000466438 ADARB2Q9NS39 739 aaKnown RBP20.04■□□□□ 0.8
HMGXB4-206ENST00000466438 MTHFSDQ2M296 383 aaKnown RBP20.03■□□□□ 0.8
HMGXB4-206ENST00000466438 CC2D2BQ6DHV5 1058 aa20.03■□□□□ 0.8
HMGXB4-206ENST00000466438 ZNF790Q6PG37 636 aa20.03■□□□□ 0.8
HMGXB4-206ENST00000466438 TPTE2Q6XPS3 522 aa20.03■□□□□ 0.8
HMGXB4-206ENST00000466438 ZNF652Q9Y2D9 606 aa20.03■□□□□ 0.8
HMGXB4-206ENST00000466438 LARGE2Q8N3Y3 721 aa20.02■□□□□ 0.8
HMGXB4-206ENST00000466438 SAGE1Q9NXZ1 904 aa20.02■□□□□ 0.8
HMGXB4-206ENST00000466438 GCC1Q96CN9 775 aa20.01■□□□□ 0.79
HMGXB4-206ENST00000466438 ZIC5Q96T25 663 aa20.01■□□□□ 0.79
HMGXB4-206ENST00000466438 GLIS2Q9BZE0 524 aaPredicted RBP20.01■□□□□ 0.79
HMGXB4-206ENST00000466438 GPRC5DQ9NZD1 345 aa20.01■□□□□ 0.79
HMGXB4-206ENST00000466438 MORC1Q86VD1 984 aa20■□□□□ 0.79
Retrieved 100 of 20,778 RNA–protein pairs in 28.5 ms