RNA–Protein interactions for RNA: ENST00000466288.1

CXCR4-203, Transcript of C-X-C motif chemokine receptor 4, humanhuman

TSL 1 (best)

Gene CXCR4, Length 1,485 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CXCR4-203ENST00000466288 SLX4Q8IY92 1834 aa19.61■□□□□ 0.73
CXCR4-203ENST00000466288 SLC34A2O95436 690 aa19.61■□□□□ 0.73
CXCR4-203ENST00000466288 LBX1P52954 281 aa19.61■□□□□ 0.73
CXCR4-203ENST00000466288 ST5P78524 1137 aa19.61■□□□□ 0.73
CXCR4-203ENST00000466288 A1BGP04217 495 aa19.6■□□□□ 0.73
CXCR4-203ENST00000466288 IL17REQ8NFR9 667 aa19.6■□□□□ 0.73
CXCR4-203ENST00000466288 NPHP1O15259 732 aa19.6■□□□□ 0.73
CXCR4-203ENST00000466288 ZNF541Q9H0D2 1346 aa19.59■□□□□ 0.73
CXCR4-203ENST00000466288 DIAPH1O60610 1272 aaKnown RBP19.59■□□□□ 0.73
CXCR4-203ENST00000466288 CCDC93Q567U6 631 aa19.59■□□□□ 0.73
CXCR4-203ENST00000466288 EAPPQ56P03 285 aaPredicted RBP19.59■□□□□ 0.73
CXCR4-203ENST00000466288 RASSF10A6NK89 507 aa19.58■□□□□ 0.72
CXCR4-203ENST00000466288 TEFQ10587 303 aa19.58■□□□□ 0.72
CXCR4-203ENST00000466288 VIRMAQ69YN4 1812 aaKnown RBP19.58■□□□□ 0.72
CXCR4-203ENST00000466288 HSPA8P11142 646 aaKnown RBP19.57■□□□□ 0.72
CXCR4-203ENST00000466288 FKBP4Q02790 459 aaKnown RBP eCLIP19.57■□□□□ 0.72
CXCR4-203ENST00000466288 ZNF277Q9NRM2 450 aaPredicted RBP19.57■□□□□ 0.72
CXCR4-203ENST00000466288 HACL1Q9UJ83 578 aa19.57■□□□□ 0.72
CXCR4-203ENST00000466288 SCN4AP35499 1836 aa19.57■□□□□ 0.72
CXCR4-203ENST00000466288 EPHX2P34913 555 aa19.56■□□□□ 0.72
CXCR4-203ENST00000466288 DEFB115Q30KQ5 88 aa19.56■□□□□ 0.72
CXCR4-203ENST00000466288 NPM2Q86SE8 214 aaKnown RBP19.56■□□□□ 0.72
CXCR4-203ENST00000466288 DZIP3Q86Y13 1208 aaKnown RBP19.56■□□□□ 0.72
CXCR4-203ENST00000466288 FMNL2Q96PY5 1086 aa19.56■□□□□ 0.72
CXCR4-203ENST00000466288 CLEC11AQ9Y240 323 aa19.56■□□□□ 0.72
CXCR4-203ENST00000466288 KLRG2A4D1S0 409 aaPredicted RBP19.55■□□□□ 0.72
CXCR4-203ENST00000466288 GNAT3A8MTJ3 354 aa19.55■□□□□ 0.72
CXCR4-203ENST00000466288 OLFM4Q6UX06 510 aa19.55■□□□□ 0.72
CXCR4-203ENST00000466288 ABHD8Q96I13 439 aa19.55■□□□□ 0.72
CXCR4-203ENST00000466288 NPR1P16066 1061 aa19.54■□□□□ 0.72
CXCR4-203ENST00000466288 MAP1SQ66K74 1059 aaPredicted RBP19.54■□□□□ 0.72
CXCR4-203ENST00000466288 NBPF5PQ86XG9 351 aaPredicted RBP19.54■□□□□ 0.72
CXCR4-203ENST00000466288 CNTROBQ8N137 903 aa19.54■□□□□ 0.72
CXCR4-203ENST00000466288 ADAMTSL1Q8N6G6 1762 aa19.54■□□□□ 0.72
CXCR4-203ENST00000466288 ARFGEF2Q9Y6D5 1785 aa19.54■□□□□ 0.72
CXCR4-203ENST00000466288 KCNQ3O43525 872 aa19.54■□□□□ 0.72
CXCR4-203ENST00000466288 TRIM26Q12899 539 aaPredicted RBP19.54■□□□□ 0.72
CXCR4-203ENST00000466288 CLEC4GQ6UXB4 293 aa19.54■□□□□ 0.72
CXCR4-203ENST00000466288 PNMA8AQ86V59 439 aaPredicted RBP19.54■□□□□ 0.72
CXCR4-203ENST00000466288 GAS2L2Q8NHY3 880 aa19.54■□□□□ 0.72
CXCR4-203ENST00000466288 RNF123Q5XPI4 1314 aa19.53■□□□□ 0.72
CXCR4-203ENST00000466288 WDR33Q9C0J8 1336 aaKnown RBP19.53■□□□□ 0.72
CXCR4-203ENST00000466288 FZD9O00144 591 aa19.53■□□□□ 0.72
CXCR4-203ENST00000466288 FAM161AQ3B820 660 aa19.53■□□□□ 0.72
CXCR4-203ENST00000466288 PIP4K2AP48426 406 aaPredicted RBP19.52■□□□□ 0.72
CXCR4-203ENST00000466288 MAP2K1Q02750 393 aaPredicted RBP19.52■□□□□ 0.72
CXCR4-203ENST00000466288 RTKN2Q8IZC4 609 aa19.52■□□□□ 0.72
CXCR4-203ENST00000466288 USP16Q9Y5T5 823 aa19.52■□□□□ 0.72
CXCR4-203ENST00000466288 CEMIPQ8WUJ3 1361 aa19.52■□□□□ 0.71
CXCR4-203ENST00000466288 CLSPNQ9HAW4 1339 aa19.51■□□□□ 0.71
CXCR4-203ENST00000466288 CACNA1SQ13698 1873 aa19.51■□□□□ 0.71
CXCR4-203ENST00000466288 IARSP41252 1262 aaKnown RBP19.5■□□□□ 0.71
CXCR4-203ENST00000466288 GPC2Q8N158 579 aa19.5■□□□□ 0.71
CXCR4-203ENST00000466288 BCORQ6W2J9 1755 aa19.5■□□□□ 0.71
CXCR4-203ENST00000466288 PRAMEF22A3QJZ6 481 aa19.49■□□□□ 0.71
CXCR4-203ENST00000466288 BTBD11A6QL63 1104 aa19.49■□□□□ 0.71
CXCR4-203ENST00000466288 TPTE2Q6XPS3 522 aa19.49■□□□□ 0.71
CXCR4-203ENST00000466288 SYNE4Q8N205 404 aa19.49■□□□□ 0.71
CXCR4-203ENST00000466288 ABT1Q9ULW3 272 aaKnown RBP19.49■□□□□ 0.71
CXCR4-203ENST00000466288 SIPA1L3O60292 1781 aaPredicted RBP19.49■□□□□ 0.71
CXCR4-203ENST00000466288 COL3A1P02461 1466 aaPredicted RBP19.49■□□□□ 0.71
CXCR4-203ENST00000466288 PER1O15534 1290 aaPredicted RBP19.48■□□□□ 0.71
CXCR4-203ENST00000466288 DDX21Q9NR30 783 aaKnown RBP eCLIP19.48■□□□□ 0.71
CXCR4-203ENST00000466288 ZNF652Q9Y2D9 606 aa19.48■□□□□ 0.71
CXCR4-203ENST00000466288 SNED1Q8TER0 1413 aa19.48■□□□□ 0.71
CXCR4-203ENST00000466288 U2SURPO15042 1029 aaKnown RBP19.48■□□□□ 0.71
CXCR4-203ENST00000466288 CC2D1BQ5T0F9 858 aaKnown RBP19.47■□□□□ 0.71
CXCR4-203ENST00000466288 NIP7Q9Y221 180 aaKnown RBP eCLIP19.47■□□□□ 0.71
CXCR4-203ENST00000466288 RGL2O15211 777 aa19.46■□□□□ 0.71
CXCR4-203ENST00000466288 ALDH1B1P30837 517 aa19.46■□□□□ 0.71
CXCR4-203ENST00000466288 PSMD1Q99460 953 aa19.46■□□□□ 0.71
CXCR4-203ENST00000466288 FMR1Q06787 632 aaKnown RBP eCLIP19.45■□□□□ 0.7
CXCR4-203ENST00000466288 PHACTR3Q96KR7 559 aa19.45■□□□□ 0.7
CXCR4-203ENST00000466288 FAM177BA6PVY3 158 aa19.44■□□□□ 0.7
CXCR4-203ENST00000466288 NBPF26B4DH59 902 aa19.44■□□□□ 0.7
CXCR4-203ENST00000466288 SNRPA1P09661 255 aaKnown RBP19.44■□□□□ 0.7
CXCR4-203ENST00000466288 RGS19P49795 217 aa19.44■□□□□ 0.7
CXCR4-203ENST00000466288 NBPF10Q6P3W6 841 aaKnown RBP19.44■□□□□ 0.7
CXCR4-203ENST00000466288 NBPF15Q8N660 670 aa19.44■□□□□ 0.7
CXCR4-203ENST00000466288 JDP2Q8WYK2 163 aa19.44■□□□□ 0.7
CXCR4-203ENST00000466288 CAPNS2Q96L46 248 aa19.44■□□□□ 0.7
CXCR4-203ENST00000466288 KIF7Q2M1P5 1343 aa19.44■□□□□ 0.7
CXCR4-203ENST00000466288 COL4A5P29400 1685 aa19.43■□□□□ 0.7
CXCR4-203ENST00000466288 CCDC85CA6NKD9 419 aa19.42■□□□□ 0.7
CXCR4-203ENST00000466288 SCNN1DP51172 638 aa19.42■□□□□ 0.7
CXCR4-203ENST00000466288 MLLT1Q03111 559 aaPredicted RBP19.42■□□□□ 0.7
CXCR4-203ENST00000466288 CRY2Q49AN0 593 aa19.42■□□□□ 0.7
CXCR4-203ENST00000466288 CST9Q5W186 159 aa19.42■□□□□ 0.7
CXCR4-203ENST00000466288 CYP4F22Q6NT55 531 aa19.42■□□□□ 0.7
CXCR4-203ENST00000466288 GPR101Q96P66 508 aaPredicted RBP19.42■□□□□ 0.7
CXCR4-203ENST00000466288 GJA3Q9Y6H8 435 aa19.42■□□□□ 0.7
CXCR4-203ENST00000466288 THSD7BQ9C0I4 1608 aa19.42■□□□□ 0.7
CXCR4-203ENST00000466288 EPS15P42566 896 aa19.41■□□□□ 0.7
CXCR4-203ENST00000466288 ECE1P42892 770 aa19.41■□□□□ 0.7
CXCR4-203ENST00000466288 EIF6P56537 245 aaKnown RBP19.41■□□□□ 0.7
CXCR4-203ENST00000466288 HLFQ16534 295 aa19.41■□□□□ 0.7
CXCR4-203ENST00000466288 LTBP1Q14766 1721 aa19.41■□□□□ 0.7
CXCR4-203ENST00000466288 PCGF6Q9BYE7 350 aa19.41■□□□□ 0.7
CXCR4-203ENST00000466288 LMOD1P29536 600 aaPredicted RBP19.4■□□□□ 0.7
CXCR4-203ENST00000466288 PRKAR2BP31323 418 aa19.4■□□□□ 0.7
Retrieved 100 of 20,778 RNA–protein pairs in 26.9 ms