RNA–Protein interactions for RNA: ENST00000466233.1

CHD3-207, Transcript of chromodomain helicase DNA binding protein 3, humanhuman

TSL 4

Gene CHD3, Length 648 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CHD3-207ENST00000466233 PLEKHF1Q96S99 279 aa17.96■□□□□ 0.47
CHD3-207ENST00000466233 RRAGCQ9HB90 399 aa17.96■□□□□ 0.47
CHD3-207ENST00000466233 RASSF7Q02833 373 aa17.95■□□□□ 0.46
CHD3-207ENST00000466233 NBPF26B4DH59 902 aa17.94■□□□□ 0.46
CHD3-207ENST00000466233 ERVV-1B6SEH8 477 aa17.94■□□□□ 0.46
CHD3-207ENST00000466233 NPHP1O15259 732 aa17.94■□□□□ 0.46
CHD3-207ENST00000466233 PRELPP51888 382 aa17.94■□□□□ 0.46
CHD3-207ENST00000466233 IFFO2Q5TF58 517 aa17.94■□□□□ 0.46
CHD3-207ENST00000466233 NBPF10Q6P3W6 841 aaKnown RBP17.94■□□□□ 0.46
CHD3-207ENST00000466233 NBPF5PQ86XG9 351 aaPredicted RBP17.94■□□□□ 0.46
CHD3-207ENST00000466233 NBPF15Q8N660 670 aa17.94■□□□□ 0.46
CHD3-207ENST00000466233 BCORQ6W2J9 1755 aa17.94■□□□□ 0.46
CHD3-207ENST00000466233 DCTN1Q14203 1278 aa17.93■□□□□ 0.46
CHD3-207ENST00000466233 NFE2L2Q16236 605 aa17.93■□□□□ 0.46
CHD3-207ENST00000466233 BABAM1Q9NWV8 329 aa17.93■□□□□ 0.46
CHD3-207ENST00000466233 ANKRD31Q8N7Z5 1873 aa17.92■□□□□ 0.46
CHD3-207ENST00000466233 PRAMEF22A3QJZ6 481 aa17.92■□□□□ 0.46
CHD3-207ENST00000466233 C21orf2O43822 256 aa17.92■□□□□ 0.46
CHD3-207ENST00000466233 NPR1P16066 1061 aa17.92■□□□□ 0.46
CHD3-207ENST00000466233 RALBP1Q15311 655 aa17.92■□□□□ 0.46
CHD3-207ENST00000466233 TAOK3Q9H2K8 898 aa17.92■□□□□ 0.46
CHD3-207ENST00000466233 ERBB4Q15303 1308 aa17.92■□□□□ 0.46
CHD3-207ENST00000466233 PRPF40BQ6NWY9 871 aaKnown RBP17.91■□□□□ 0.46
CHD3-207ENST00000466233 C7orf43Q8WVR3 580 aa17.91■□□□□ 0.46
CHD3-207ENST00000466233 EIF4A1P60842 406 aaKnown RBP17.9■□□□□ 0.46
CHD3-207ENST00000466233 ERFEQ4G0M1 354 aa17.9■□□□□ 0.46
CHD3-207ENST00000466233 JMYQ8N9B5 988 aa17.9■□□□□ 0.46
CHD3-207ENST00000466233 NIP7Q9Y221 180 aaKnown RBP eCLIP17.9■□□□□ 0.46
CHD3-207ENST00000466233 FER1L6Q2WGJ9 1857 aa17.89■□□□□ 0.45
CHD3-207ENST00000466233 ALDH1B1P30837 517 aa17.89■□□□□ 0.45
CHD3-207ENST00000466233 KLRG1Q96E93 195 aa17.89■□□□□ 0.45
CHD3-207ENST00000466233 NYXQ9GZU5 481 aa17.89■□□□□ 0.45
CHD3-207ENST00000466233 MAPK8IP3Q9UPT6 1336 aa17.88■□□□□ 0.45
CHD3-207ENST00000466233 IBTKQ9P2D0 1353 aaPredicted RBP17.88■□□□□ 0.45
CHD3-207ENST00000466233 WDR90Q96KV7 1748 aa17.87■□□□□ 0.45
CHD3-207ENST00000466233 POTECB2RU33 542 aa17.87■□□□□ 0.45
CHD3-207ENST00000466233 PIP4K2AP48426 406 aaPredicted RBP17.87■□□□□ 0.45
CHD3-207ENST00000466233 GRIPAP1Q4V328 841 aa17.87■□□□□ 0.45
CHD3-207ENST00000466233 CCDC93Q567U6 631 aa17.87■□□□□ 0.45
CHD3-207ENST00000466233 RTKN2Q8IZC4 609 aa17.87■□□□□ 0.45
CHD3-207ENST00000466233 RIC1Q4ADV7 1423 aa17.87■□□□□ 0.45
CHD3-207ENST00000466233 COL11A2P13942 1736 aaPredicted RBP17.86■□□□□ 0.45
CHD3-207ENST00000466233 ARFGEF2Q9Y6D5 1785 aa17.86■□□□□ 0.45
CHD3-207ENST00000466233 CRY2Q49AN0 593 aa17.86■□□□□ 0.45
CHD3-207ENST00000466233 CC2D2BQ6DHV5 1058 aa17.86■□□□□ 0.45
CHD3-207ENST00000466233 CCDC24Q8N4L8 307 aa17.86■□□□□ 0.45
CHD3-207ENST00000466233 MIS18AQ9NYP9 233 aa17.86■□□□□ 0.45
CHD3-207ENST00000466233 MAP3K15Q6ZN16 1313 aa17.86■□□□□ 0.45
CHD3-207ENST00000466233 LAMB4A4D0S4 1761 aa17.85■□□□□ 0.45
CHD3-207ENST00000466233 LMOD3Q0VAK6 560 aa17.85■□□□□ 0.45
CHD3-207ENST00000466233 HLFQ16534 295 aa17.85■□□□□ 0.45
CHD3-207ENST00000466233 L3MBTL3Q96JM7 780 aaPredicted RBP17.85■□□□□ 0.45
CHD3-207ENST00000466233 DICER1Q9UPY3 1922 aaKnown RBP17.85■□□□□ 0.45
CHD3-207ENST00000466233 KDM3BQ7LBC6 1761 aa17.84■□□□□ 0.45
CHD3-207ENST00000466233 IQCA1LA6NCM1 817 aa17.84■□□□□ 0.45
CHD3-207ENST00000466233 FKBP4Q02790 459 aaKnown RBP eCLIP17.84■□□□□ 0.45
CHD3-207ENST00000466233 KIF6Q6ZMV9 814 aa17.84■□□□□ 0.45
CHD3-207ENST00000466233 TIAM2Q8IVF5 1701 aa17.84■□□□□ 0.45
CHD3-207ENST00000466233 GTF2E1P29083 439 aaPredicted RBP17.83■□□□□ 0.44
CHD3-207ENST00000466233 HOXA10P31260 410 aaPredicted RBP17.83■□□□□ 0.44
CHD3-207ENST00000466233 SLX4Q8IY92 1834 aa17.83■□□□□ 0.44
CHD3-207ENST00000466233 PSMD1Q99460 953 aa17.82■□□□□ 0.44
CHD3-207ENST00000466233 PARP10Q53GL7 1025 aa17.81■□□□□ 0.44
CHD3-207ENST00000466233 GIGYF2Q6Y7W6 1299 aaKnown RBP17.81■□□□□ 0.44
CHD3-207ENST00000466233 ZNF34Q8IZ26 560 aa17.81■□□□□ 0.44
CHD3-207ENST00000466233 ZNF219Q9P2Y4 722 aaPredicted RBP17.81■□□□□ 0.44
CHD3-207ENST00000466233 DLG5Q8TDM6 1919 aa17.8■□□□□ 0.44
CHD3-207ENST00000466233 CCDC88AQ3V6T2 1871 aa17.8■□□□□ 0.44
CHD3-207ENST00000466233 RNF123Q5XPI4 1314 aa17.8■□□□□ 0.44
CHD3-207ENST00000466233 RIPK4P57078 832 aa17.8■□□□□ 0.44
CHD3-207ENST00000466233 TSPYL4Q9UJ04 414 aa17.8■□□□□ 0.44
CHD3-207ENST00000466233 RRP7AQ9Y3A4 280 aaKnown RBP17.8■□□□□ 0.44
CHD3-207ENST00000466233 TMPOP42166 694 aaKnown RBP17.79■□□□□ 0.44
CHD3-207ENST00000466233 CHADLQ6NUI6 762 aa17.79■□□□□ 0.44
CHD3-207ENST00000466233 LRP10Q7Z4F1 713 aa17.79■□□□□ 0.44
CHD3-207ENST00000466233 PPP1R42Q7Z4L9 355 aa17.79■□□□□ 0.44
CHD3-207ENST00000466233 MYBBP1AQ9BQG0 1328 aaKnown RBP17.78■□□□□ 0.44
CHD3-207ENST00000466233 FZD9O00144 591 aa17.78■□□□□ 0.44
CHD3-207ENST00000466233 DDNO94850 711 aaPredicted RBP17.78■□□□□ 0.44
CHD3-207ENST00000466233 SLC10A5Q5PT55 438 aa17.78■□□□□ 0.44
CHD3-207ENST00000466233 TTLL7Q6ZT98 887 aa17.78■□□□□ 0.44
CHD3-207ENST00000466233 CRAMP1Q96RY5 1269 aa17.78■□□□□ 0.44
CHD3-207ENST00000466233 THUMPD2Q9BTF0 503 aaKnown RBP17.78■□□□□ 0.44
CHD3-207ENST00000466233 VPS33BQ9H267 617 aa17.78■□□□□ 0.44
CHD3-207ENST00000466233 SNED1Q8TER0 1413 aa17.78■□□□□ 0.44
CHD3-207ENST00000466233 LDHDQ86WU2 507 aa17.77■□□□□ 0.44
CHD3-207ENST00000466233 CREBZFQ9NS37 354 aa17.77■□□□□ 0.44
CHD3-207ENST00000466233 UBN2Q6ZU65 1347 aa17.76■□□□□ 0.43
CHD3-207ENST00000466233 MYL6BP14649 208 aa17.76■□□□□ 0.43
CHD3-207ENST00000466233 IARSP41252 1262 aaKnown RBP17.76■□□□□ 0.43
CHD3-207ENST00000466233 PDIA6Q15084 440 aa17.76■□□□□ 0.43
CHD3-207ENST00000466233 HSP90AB3PQ58FF7 597 aa17.76■□□□□ 0.43
CHD3-207ENST00000466233 NGEFQ8N5V2 710 aa17.76■□□□□ 0.43
CHD3-207ENST00000466233 RPGRQ92834 1020 aaKnown RBP17.76■□□□□ 0.43
CHD3-207ENST00000466233 SCN4AP35499 1836 aa17.75■□□□□ 0.43
CHD3-207ENST00000466233 CHL1O00533 1208 aa17.75■□□□□ 0.43
CHD3-207ENST00000466233 NTSR2O95665 410 aa17.75■□□□□ 0.43
CHD3-207ENST00000466233 HOXB7P09629 217 aa17.75■□□□□ 0.43
CHD3-207ENST00000466233 HTRA3P83110 453 aa17.75■□□□□ 0.43
CHD3-207ENST00000466233 SUSD4Q5VX71 490 aa17.75■□□□□ 0.43
Retrieved 100 of 20,778 RNA–protein pairs in 11.9 ms