RNA–Protein interactions for RNA: ENST00000466048.6

USP54-210, Transcript of ubiquitin specific peptidase 54, humanhuman

TSL 5

Gene USP54, Length 4,674 nt, Biotype nonsense mediated decay, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP54-210ENST00000466048 DDX21Q9NR30 783 aaKnown RBP eCLIP9.25□□□□□ -0.93
USP54-210ENST00000466048 CHPF2Q9P2E5 772 aa9.25□□□□□ -0.93
USP54-210ENST00000466048 ERBB4Q15303 1308 aa9.25□□□□□ -0.93
USP54-210ENST00000466048 GIGYF1O75420 1035 aaPredicted RBP9.25□□□□□ -0.93
USP54-210ENST00000466048 FBXW7Q969H0 707 aa9.25□□□□□ -0.93
USP54-210ENST00000466048 TBC1D32Q96NH3 1257 aa9.25□□□□□ -0.93
USP54-210ENST00000466048 GNL3LQ9NVN8 582 aaKnown RBP9.25□□□□□ -0.93
USP54-210ENST00000466048 STK32BQ9NY57 414 aa9.25□□□□□ -0.93
USP54-210ENST00000466048 MFAP1P55081 439 aaKnown RBP9.25□□□□□ -0.93
USP54-210ENST00000466048 RGPD2P0DJD1 1756 aa9.25□□□□□ -0.93
USP54-210ENST00000466048 PARP4Q9UKK3 1724 aaKnown RBP9.25□□□□□ -0.93
USP54-210ENST00000466048 ERVV-2B6SEH9 535 aa9.25□□□□□ -0.93
USP54-210ENST00000466048 ZNF790Q6PG37 636 aa9.25□□□□□ -0.93
USP54-210ENST00000466048 SLKQ9H2G2 1235 aaPredicted RBP9.25□□□□□ -0.93
USP54-210ENST00000466048 IL27Q8NEV9 243 aa9.24□□□□□ -0.93
USP54-210ENST00000466048 DDX17Q92841 729 aaKnown RBP9.24□□□□□ -0.93
USP54-210ENST00000466048 GZF1Q9H116 711 aaPredicted RBP9.24□□□□□ -0.93
USP54-210ENST00000466048 IBTKQ9P2D0 1353 aaPredicted RBP9.24□□□□□ -0.93
USP54-210ENST00000466048 A0A0U1RQG5 324 aaPredicted RBP9.24□□□□□ -0.93
USP54-210ENST00000466048 COL18A1P39060 1754 aa9.24□□□□□ -0.93
USP54-210ENST00000466048 AOX1Q06278 1338 aa9.24□□□□□ -0.93
USP54-210ENST00000466048 N4BP2Q86UW6 1770 aaPredicted RBP9.23□□□□□ -0.93
USP54-210ENST00000466048 SIRT2Q8IXJ6 389 aa9.23□□□□□ -0.93
USP54-210ENST00000466048 GOLGA6L1Q8N7Z2 621 aa9.23□□□□□ -0.93
USP54-210ENST00000466048 ADAMTS7Q9UKP4 1686 aa9.23□□□□□ -0.93
USP54-210ENST00000466048 REC8O95072 547 aa9.23□□□□□ -0.93
USP54-210ENST00000466048 TTC22Q5TAA0 569 aa9.23□□□□□ -0.93
USP54-210ENST00000466048 DRC7Q8IY82 874 aa9.23□□□□□ -0.93
USP54-210ENST00000466048 QTRT2Q9H974 415 aaKnown RBP9.23□□□□□ -0.93
USP54-210ENST00000466048 XIRP1Q702N8 1843 aaKnown RBP9.23□□□□□ -0.93
USP54-210ENST00000466048 PTCD1O75127 700 aaKnown RBP9.23□□□□□ -0.93
USP54-210ENST00000466048 RFC4P35249 363 aa9.23□□□□□ -0.93
USP54-210ENST00000466048 FAM196AQ6ZSG2 479 aa9.23□□□□□ -0.93
USP54-210ENST00000466048 RUFY2Q8WXA3 655 aa9.23□□□□□ -0.93
USP54-210ENST00000466048 ERC2O15083 957 aa9.23□□□□□ -0.93
USP54-210ENST00000466048 IFIT2P09913 472 aaKnown RBP9.23□□□□□ -0.93
USP54-210ENST00000466048 PPP1R42Q7Z4L9 355 aa9.23□□□□□ -0.93
USP54-210ENST00000466048 LINS1Q8NG48 757 aa9.23□□□□□ -0.93
USP54-210ENST00000466048 PI4KAP2A4QPH2 592 aa9.22□□□□□ -0.93
USP54-210ENST00000466048 PI4KAP1Q8N8J0 262 aa9.22□□□□□ -0.93
USP54-210ENST00000466048 TRIM34Q9BYJ4 488 aa9.22□□□□□ -0.93
USP54-210ENST00000466048 LRRFIP2Q9Y608 721 aaKnown RBP9.22□□□□□ -0.93
USP54-210ENST00000466048 HEG1Q9ULI3 1381 aa9.22□□□□□ -0.93
USP54-210ENST00000466048 MRC1P22897 1456 aa9.22□□□□□ -0.93
USP54-210ENST00000466048 SETQ01105 290 aaPredicted RBP9.22□□□□□ -0.93
USP54-210ENST00000466048 UNC5CLQ8IV45 518 aa9.22□□□□□ -0.93
USP54-210ENST00000466048 CRYBG1Q9Y4K1 1723 aa9.22□□□□□ -0.93
USP54-210ENST00000466048 PKD1L3Q7Z443 1732 aa9.22□□□□□ -0.93
USP54-210ENST00000466048 RGPD5Q99666 1765 aa9.22□□□□□ -0.93
USP54-210ENST00000466048 MEGF6O75095 1541 aa9.22□□□□□ -0.93
USP54-210ENST00000466048 NHSL1Q5SYE7 1610 aa9.22□□□□□ -0.93
USP54-210ENST00000466048 MRE11P49959 708 aa9.22□□□□□ -0.93
USP54-210ENST00000466048 PLEKHM2Q8IWE5 1019 aa9.22□□□□□ -0.93
USP54-210ENST00000466048 MAP3K2Q9Y2U5 619 aa9.22□□□□□ -0.93
USP54-210ENST00000466048 CCDC66A2RUB6 948 aa9.21□□□□□ -0.93
USP54-210ENST00000466048 CALRP27797 417 aaKnown RBP9.21□□□□□ -0.93
USP54-210ENST00000466048 BEND3Q5T5X7 828 aa9.21□□□□□ -0.93
USP54-210ENST00000466048 KIF1BPQ96EK5 621 aa9.21□□□□□ -0.93
USP54-210ENST00000466048 PHAXQ9H814 394 aaKnown RBP9.21□□□□□ -0.93
USP54-210ENST00000466048 SCN11AQ9UI33 1791 aa9.21□□□□□ -0.93
USP54-210ENST00000466048 ZNF771Q7L3S4 317 aaPredicted RBP9.21□□□□□ -0.94
USP54-210ENST00000466048 NFATC2IPQ8NCF5 419 aa9.21□□□□□ -0.94
USP54-210ENST00000466048 NAP1L2Q9ULW6 460 aaPredicted RBP9.21□□□□□ -0.94
USP54-210ENST00000466048 COL5A2P05997 1499 aaPredicted RBP9.21□□□□□ -0.94
USP54-210ENST00000466048 IGHMBP2P38935 993 aaKnown RBP9.21□□□□□ -0.94
USP54-210ENST00000466048 MPHOSPH8Q99549 860 aa9.21□□□□□ -0.94
USP54-210ENST00000466048 OSBPL3Q9H4L5 887 aa9.21□□□□□ -0.94
USP54-210ENST00000466048 RTCBQ9Y3I0 505 aaKnown RBP9.21□□□□□ -0.94
USP54-210ENST00000466048 SSH3Q8TE77 659 aa9.2□□□□□ -0.94
USP54-210ENST00000466048 USP44Q9H0E7 712 aa9.2□□□□□ -0.94
USP54-210ENST00000466048 TAOK2Q9UL54 1235 aa9.2□□□□□ -0.94
USP54-210ENST00000466048 ST5P78524 1137 aa9.2□□□□□ -0.94
USP54-210ENST00000466048 CCDC57Q2TAC2 916 aa9.2□□□□□ -0.94
USP54-210ENST00000466048 NYXQ9GZU5 481 aa9.2□□□□□ -0.94
USP54-210ENST00000466048 KDM6AO15550 1401 aaPredicted RBP9.2□□□□□ -0.94
USP54-210ENST00000466048 KCNQ3O43525 872 aa9.2□□□□□ -0.94
USP54-210ENST00000466048 BICDL1Q6ZP65 573 aa9.2□□□□□ -0.94
USP54-210ENST00000466048 SRGAP3O43295 1099 aa9.2□□□□□ -0.94
USP54-210ENST00000466048 SURF6O75683 361 aaKnown RBP9.2□□□□□ -0.94
USP54-210ENST00000466048 RBM25P49756 843 aaKnown RBP9.2□□□□□ -0.94
USP54-210ENST00000466048 RBM6P78332 1123 aaKnown RBP9.2□□□□□ -0.94
USP54-210ENST00000466048 NKX1-1Q15270 411 aaPredicted RBP9.2□□□□□ -0.94
USP54-210ENST00000466048 TAF3Q5VWG9 929 aa9.2□□□□□ -0.94
USP54-210ENST00000466048 SIPA1L3O60292 1781 aaPredicted RBP9.2□□□□□ -0.94
USP54-210ENST00000466048 MX1P20591 662 aa9.19□□□□□ -0.94
USP54-210ENST00000466048 ACSBG1Q96GR2 724 aa9.19□□□□□ -0.94
USP54-210ENST00000466048 ATP6V1AP38606 617 aa9.19□□□□□ -0.94
USP54-210ENST00000466048 CLASRPQ8N2M8 674 aaKnown RBP9.19□□□□□ -0.94
USP54-210ENST00000466048 FAM98CQ17RN3 349 aaKnown RBP9.19□□□□□ -0.94
USP54-210ENST00000466048 TEX35Q5T0J7 233 aa9.19□□□□□ -0.94
USP54-210ENST00000466048 GRM8O00222 908 aa9.19□□□□□ -0.94
USP54-210ENST00000466048 CYP27B1O15528 508 aa9.19□□□□□ -0.94
USP54-210ENST00000466048 TBC1D9Q6ZT07 1266 aa9.19□□□□□ -0.94
USP54-210ENST00000466048 CNNM1Q9NRU3 951 aa9.19□□□□□ -0.94
USP54-210ENST00000466048 MYL6BP14649 208 aa9.18□□□□□ -0.94
USP54-210ENST00000466048 GPS2Q13227 327 aa9.18□□□□□ -0.94
USP54-210ENST00000466048 MTX1Q13505 466 aa9.18□□□□□ -0.94
USP54-210ENST00000466048 POLA2Q14181 598 aa9.18□□□□□ -0.94
USP54-210ENST00000466048 TBC1D2BQ9UPU7 963 aa9.18□□□□□ -0.94
USP54-210ENST00000466048 EPB41L2O43491 1005 aaKnown RBP9.18□□□□□ -0.94
Retrieved 100 of 20,778 RNA–protein pairs in 25.8 ms