RNA–Protein interactions for RNA: ENST00000465727.5

SDF4-205, Transcript of stromal cell derived factor 4, humanhuman

TSL 2

Gene SDF4, Length 2,095 nt, Biotype nonsense mediated decay, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SDF4-205ENST00000465727 ADAMTSL3P82987 1691 aa23.5■■□□□ 1.35
SDF4-205ENST00000465727 USP42Q9H9J4 1324 aaKnown RBP23.5■■□□□ 1.35
SDF4-205ENST00000465727 NCKAP5LQ9HCH0 1330 aa23.5■■□□□ 1.35
SDF4-205ENST00000465727 KRT85P78386 507 aa23.5■■□□□ 1.35
SDF4-205ENST00000465727 PAXBP1Q9Y5B6 917 aa23.5■■□□□ 1.35
SDF4-205ENST00000465727 MAP3K19Q56UN5 1328 aa23.49■■□□□ 1.35
SDF4-205ENST00000465727 SPDYE4A6NLX3 237 aa23.49■■□□□ 1.35
SDF4-205ENST00000465727 CCDC83Q8IWF9 413 aa23.49■■□□□ 1.35
SDF4-205ENST00000465727 TOPAZ1Q8N9V7 1692 aa23.49■■□□□ 1.35
SDF4-205ENST00000465727 PTGS1P23219 599 aa23.48■■□□□ 1.35
SDF4-205ENST00000465727 TYRO3Q06418 890 aa23.48■■□□□ 1.35
SDF4-205ENST00000465727 NCBP1Q09161 790 aaKnown RBP23.48■■□□□ 1.35
SDF4-205ENST00000465727 KCNB2Q92953 911 aa23.48■■□□□ 1.35
SDF4-205ENST00000465727 PDRG1Q9NUG6 133 aa23.48■■□□□ 1.35
SDF4-205ENST00000465727 PPP6R1Q9UPN7 881 aa23.48■■□□□ 1.35
SDF4-205ENST00000465727 METP08581 1390 aa23.48■■□□□ 1.35
SDF4-205ENST00000465727 TTC41PQ6P2S7 1318 aa23.48■■□□□ 1.35
SDF4-205ENST00000465727 SURF6O75683 361 aaKnown RBP23.48■■□□□ 1.35
SDF4-205ENST00000465727 LARGE1O95461 756 aa23.48■■□□□ 1.35
SDF4-205ENST00000465727 TPRNQ4KMQ1 711 aa23.48■■□□□ 1.35
SDF4-205ENST00000465727 HSP90AB4PQ58FF6 505 aa23.48■■□□□ 1.35
SDF4-205ENST00000465727 ZSWIM6Q9HCJ5 1215 aa23.48■■□□□ 1.35
SDF4-205ENST00000465727 CGNQ9P2M7 1197 aaKnown RBP23.48■■□□□ 1.35
SDF4-205ENST00000465727 CYP46A1Q9Y6A2 500 aa23.48■■□□□ 1.35
SDF4-205ENST00000465727 MRVI1Q9Y6F6 885 aa23.48■■□□□ 1.35
SDF4-205ENST00000465727 PRR36Q9H6K5 1346 aa23.47■■□□□ 1.35
SDF4-205ENST00000465727 PDCP20941 246 aa23.47■■□□□ 1.35
SDF4-205ENST00000465727 GABPB1Q06547 395 aaPredicted RBP23.47■■□□□ 1.35
SDF4-205ENST00000465727 BABAM1Q9NWV8 329 aa23.47■■□□□ 1.35
SDF4-205ENST00000465727 RIMS1Q86UR5 1692 aaKnown RBP23.47■■□□□ 1.35
SDF4-205ENST00000465727 ADGRL3Q9HAR2 1447 aa23.46■■□□□ 1.35
SDF4-205ENST00000465727 FOXO3O43524 673 aa23.46■■□□□ 1.35
SDF4-205ENST00000465727 TXNDC2Q86VQ3 553 aa23.46■■□□□ 1.35
SDF4-205ENST00000465727 VPS37CA5D8V6 355 aaPredicted RBP23.45■■□□□ 1.35
SDF4-205ENST00000465727 CWC27Q6UX04 472 aaKnown RBP23.45■■□□□ 1.35
SDF4-205ENST00000465727 PPP1R42Q7Z4L9 355 aa23.45■■□□□ 1.35
SDF4-205ENST00000465727 DDX19AQ9NUU7 478 aaKnown RBP23.45■■□□□ 1.35
SDF4-205ENST00000465727 GLRX3O76003 335 aaKnown RBP23.45■■□□□ 1.34
SDF4-205ENST00000465727 MAP4K4O95819 1239 aaPredicted RBP23.45■■□□□ 1.34
SDF4-205ENST00000465727 RBM43Q6ZSC3 357 aaKnown RBP23.45■■□□□ 1.34
SDF4-205ENST00000465727 CCDC186Q7Z3E2 898 aa23.45■■□□□ 1.34
SDF4-205ENST00000465727 PLA2G4DQ86XP0 818 aa23.45■■□□□ 1.34
SDF4-205ENST00000465727 USP6P35125 1406 aa23.44■■□□□ 1.34
SDF4-205ENST00000465727 CAVIN2O95810 425 aa23.44■■□□□ 1.34
SDF4-205ENST00000465727 TTC6Q86TZ1 520 aa23.44■■□□□ 1.34
SDF4-205ENST00000465727 JAKMIP1Q96N16 626 aaKnown RBP23.44■■□□□ 1.34
SDF4-205ENST00000465727 SCAND2PQ9GZW5 306 aaPredicted RBP23.44■■□□□ 1.34
SDF4-205ENST00000465727 CTNNA3Q9UI47 895 aa23.44■■□□□ 1.34
SDF4-205ENST00000465727 TTC21AQ8NDW8 1320 aa23.44■■□□□ 1.34
SDF4-205ENST00000465727 LARP6Q9BRS8 491 aaKnown RBP23.44■■□□□ 1.34
SDF4-205ENST00000465727 TNMDQ9H2S6 317 aa23.44■■□□□ 1.34
SDF4-205ENST00000465727 NPHP3Q7Z494 1330 aa23.43■■□□□ 1.34
SDF4-205ENST00000465727 LUZP1Q86V48 1076 aa23.43■■□□□ 1.34
SDF4-205ENST00000465727 TDRD7Q8NHU6 1098 aaKnown RBP23.43■■□□□ 1.34
SDF4-205ENST00000465727 SPG7Q9UQ90 795 aa23.43■■□□□ 1.34
SDF4-205ENST00000465727 FLT4P35916 1363 aa23.43■■□□□ 1.34
SDF4-205ENST00000465727 SBNO1A3KN83 1393 aa23.42■■□□□ 1.34
SDF4-205ENST00000465727 ZSCAN25Q6NSZ9 544 aa23.42■■□□□ 1.34
SDF4-205ENST00000465727 CBX8Q9HC52 389 aa23.42■■□□□ 1.34
SDF4-205ENST00000465727 IGSF1Q8N6C5 1336 aa23.42■■□□□ 1.34
SDF4-205ENST00000465727 PLEKHG3A1L390 1219 aa23.42■■□□□ 1.34
SDF4-205ENST00000465727 TNNT1P13805 278 aa23.42■■□□□ 1.34
SDF4-205ENST00000465727 ZKSCAN1P17029 563 aaPredicted RBP23.42■■□□□ 1.34
SDF4-205ENST00000465727 ZNF75DP51815 510 aa23.42■■□□□ 1.34
SDF4-205ENST00000465727 LARP1BQ659C4 914 aaKnown RBP23.42■■□□□ 1.34
SDF4-205ENST00000465727 CCDC112Q8NEF3 446 aa23.42■■□□□ 1.34
SDF4-205ENST00000465727 CDC25BP30305 580 aa23.41■■□□□ 1.34
SDF4-205ENST00000465727 DRC7Q8IY82 874 aa23.41■■□□□ 1.34
SDF4-205ENST00000465727 C16orf45Q96MC5 204 aaPredicted RBP23.41■■□□□ 1.34
SDF4-205ENST00000465727 DDX41Q9UJV9 622 aaKnown RBP23.41■■□□□ 1.34
SDF4-205ENST00000465727 CPA1P15085 419 aa23.4■■□□□ 1.34
SDF4-205ENST00000465727 ST3GAL1Q11201 340 aa23.4■■□□□ 1.34
SDF4-205ENST00000465727 ME3Q16798 604 aa23.4■■□□□ 1.34
SDF4-205ENST00000465727 ANO6Q4KMQ2 910 aa23.4■■□□□ 1.34
SDF4-205ENST00000465727 ACEP12821 1306 aa23.4■■□□□ 1.34
SDF4-205ENST00000465727 SRGAP3O43295 1099 aa23.4■■□□□ 1.34
SDF4-205ENST00000465727 LIG1P18858 919 aa23.4■■□□□ 1.34
SDF4-205ENST00000465727 TRIM5Q9C035 493 aa23.4■■□□□ 1.34
SDF4-205ENST00000465727 GOLGA6L4A6NEF3 574 aa23.39■■□□□ 1.34
SDF4-205ENST00000465727 CLSTN2Q9H4D0 955 aa23.39■■□□□ 1.34
SDF4-205ENST00000465727 AGLP35573 1532 aa23.39■■□□□ 1.33
SDF4-205ENST00000465727 GNAT3A8MTJ3 354 aa23.39■■□□□ 1.33
SDF4-205ENST00000465727 NECTIN1Q15223 517 aa23.39■■□□□ 1.33
SDF4-205ENST00000465727 ADCK5Q3MIX3 580 aa23.39■■□□□ 1.33
SDF4-205ENST00000465727 PRPF40BQ6NWY9 871 aaKnown RBP23.39■■□□□ 1.33
SDF4-205ENST00000465727 DACT1Q9NYF0 836 aa23.39■■□□□ 1.33
SDF4-205ENST00000465727 NEMFO60524 1076 aa23.38■■□□□ 1.33
SDF4-205ENST00000465727 ANKRD1Q15327 319 aa23.38■■□□□ 1.33
SDF4-205ENST00000465727 MORC2Q9Y6X9 1032 aaPredicted RBP23.38■■□□□ 1.33
SDF4-205ENST00000465727 PSMA5P28066 241 aa23.37■■□□□ 1.33
SDF4-205ENST00000465727 LRMPQ12912 555 aa23.37■■□□□ 1.33
SDF4-205ENST00000465727 CAMK4Q16566 473 aa23.37■■□□□ 1.33
SDF4-205ENST00000465727 CEP170BQ9Y4F5 1589 aaPredicted RBP23.37■■□□□ 1.33
SDF4-205ENST00000465727 PTH1RQ03431 593 aa23.37■■□□□ 1.33
SDF4-205ENST00000465727 GPATCH3Q96I76 525 aa23.37■■□□□ 1.33
SDF4-205ENST00000465727 CDC37L1Q7L3B6 337 aa23.36■■□□□ 1.33
SDF4-205ENST00000465727 SPATA32Q96LK8 384 aa23.36■■□□□ 1.33
SDF4-205ENST00000465727 MLECQ14165 292 aa23.36■■□□□ 1.33
SDF4-205ENST00000465727 ALDH8A1Q9H2A2 487 aaPredicted RBP23.36■■□□□ 1.33
SDF4-205ENST00000465727 CLIP2Q9UDT6 1046 aa23.36■■□□□ 1.33
Retrieved 100 of 20,778 RNA–protein pairs in 242.3 ms