RNA–Protein interactions for RNA: ENST00000465238.5

COL7A1-205, Transcript of collagen type VII alpha 1 chain, humanhuman

TSL 2

Gene COL7A1, Length 587 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL7A1-205ENST00000465238 RASSF7Q02833 373 aa23.22■■□□□ 1.31
COL7A1-205ENST00000465238 NEUROD2Q15784 382 aa23.22■■□□□ 1.31
COL7A1-205ENST00000465238 FAM9BQ8IZU0 186 aa23.22■■□□□ 1.31
COL7A1-205ENST00000465238 RRP7AQ9Y3A4 280 aaKnown RBP23.22■■□□□ 1.31
COL7A1-205ENST00000465238 LMOD3Q0VAK6 560 aa23.21■■□□□ 1.31
COL7A1-205ENST00000465238 CLEC4GQ6UXB4 293 aa23.21■■□□□ 1.31
COL7A1-205ENST00000465238 C16orf71Q8IYS4 520 aaPredicted RBP23.21■■□□□ 1.31
COL7A1-205ENST00000465238 CNBD1Q8NA66 436 aa23.21■■□□□ 1.31
COL7A1-205ENST00000465238 TNRC6CQ9HCJ0 1690 aaKnown RBP23.2■■□□□ 1.3
COL7A1-205ENST00000465238 NPHP1O15259 732 aa23.2■■□□□ 1.3
COL7A1-205ENST00000465238 PIP4K2AP48426 406 aaPredicted RBP23.2■■□□□ 1.3
COL7A1-205ENST00000465238 RBM46Q8TBY0 533 aaKnown RBP23.2■■□□□ 1.3
COL7A1-205ENST00000465238 ZNF622Q969S3 477 aaKnown RBP eCLIP23.2■■□□□ 1.3
COL7A1-205ENST00000465238 ZNF652Q9Y2D9 606 aa23.2■■□□□ 1.3
COL7A1-205ENST00000465238 COL11A2P13942 1736 aaPredicted RBP23.19■■□□□ 1.3
COL7A1-205ENST00000465238 APAF1O14727 1248 aa23.19■■□□□ 1.3
COL7A1-205ENST00000465238 APLP1P51693 650 aa23.19■■□□□ 1.3
COL7A1-205ENST00000465238 ST5P78524 1137 aa23.19■■□□□ 1.3
COL7A1-205ENST00000465238 CCDC88AQ3V6T2 1871 aa23.19■■□□□ 1.3
COL7A1-205ENST00000465238 RGL2O15211 777 aa23.18■■□□□ 1.3
COL7A1-205ENST00000465238 MIER1Q8N108 512 aa23.18■■□□□ 1.3
COL7A1-205ENST00000465238 CCDC24Q8N4L8 307 aa23.18■■□□□ 1.3
COL7A1-205ENST00000465238 NFKBIEO00221 500 aa23.17■■□□□ 1.3
COL7A1-205ENST00000465238 LAMB4A4D0S4 1761 aa23.17■■□□□ 1.3
COL7A1-205ENST00000465238 NBPF26B4DH59 902 aa23.16■■□□□ 1.3
COL7A1-205ENST00000465238 PRELPP51888 382 aa23.16■■□□□ 1.3
COL7A1-205ENST00000465238 NBPF10Q6P3W6 841 aaKnown RBP23.16■■□□□ 1.3
COL7A1-205ENST00000465238 NBPF15Q8N660 670 aa23.16■■□□□ 1.3
COL7A1-205ENST00000465238 RRAGCQ9HB90 399 aa23.16■■□□□ 1.3
COL7A1-205ENST00000465238 KDM3BQ7LBC6 1761 aa23.15■■□□□ 1.3
COL7A1-205ENST00000465238 NBPF5PQ86XG9 351 aaPredicted RBP23.15■■□□□ 1.3
COL7A1-205ENST00000465238 CNKSR1Q969H4 720 aa23.15■■□□□ 1.3
COL7A1-205ENST00000465238 THUMPD2Q9BTF0 503 aaKnown RBP23.15■■□□□ 1.3
COL7A1-205ENST00000465238 MIS18AQ9NYP9 233 aa23.15■■□□□ 1.3
COL7A1-205ENST00000465238 TIAM2Q8IVF5 1701 aa23.15■■□□□ 1.3
COL7A1-205ENST00000465238 FER1L6Q2WGJ9 1857 aa23.14■■□□□ 1.29
COL7A1-205ENST00000465238 C21orf2O43822 256 aa23.14■■□□□ 1.29
COL7A1-205ENST00000465238 FSTL1Q12841 308 aa23.14■■□□□ 1.29
COL7A1-205ENST00000465238 STYK1Q6J9G0 422 aa23.14■■□□□ 1.29
COL7A1-205ENST00000465238 GLTPD2A6NH11 291 aa23.13■■□□□ 1.29
COL7A1-205ENST00000465238 SRGNP10124 158 aa23.13■■□□□ 1.29
COL7A1-205ENST00000465238 MASTLQ96GX5 879 aa23.12■■□□□ 1.29
COL7A1-205ENST00000465238 ZNF219Q9P2Y4 722 aaPredicted RBP23.12■■□□□ 1.29
COL7A1-205ENST00000465238 TRIM35Q9UPQ4 493 aa23.12■■□□□ 1.29
COL7A1-205ENST00000465238 DICER1Q9UPY3 1922 aaKnown RBP23.12■■□□□ 1.29
COL7A1-205ENST00000465238 ARFGEF2Q9Y6D5 1785 aa23.12■■□□□ 1.29
COL7A1-205ENST00000465238 CACNA1SQ13698 1873 aa23.11■■□□□ 1.29
COL7A1-205ENST00000465238 SLX4Q8IY92 1834 aa23.11■■□□□ 1.29
COL7A1-205ENST00000465238 TPTE2Q6XPS3 522 aa23.11■■□□□ 1.29
COL7A1-205ENST00000465238 NIP7Q9Y221 180 aaKnown RBP eCLIP23.11■■□□□ 1.29
COL7A1-205ENST00000465238 LTBP3Q9NS15 1303 aa23.1■■□□□ 1.29
COL7A1-205ENST00000465238 SOGA3Q5TF21 947 aa23.1■■□□□ 1.29
COL7A1-205ENST00000465238 PRPF40BQ6NWY9 871 aaKnown RBP23.1■■□□□ 1.29
COL7A1-205ENST00000465238 VEGFAP15692 232 aaPredicted RBP23.09■■□□□ 1.29
COL7A1-205ENST00000465238 EIF4A1P60842 406 aaKnown RBP23.09■■□□□ 1.29
COL7A1-205ENST00000465238 WDR90Q96KV7 1748 aa23.08■■□□□ 1.29
COL7A1-205ENST00000465238 DPY19L2Q6NUT2 758 aa23.08■■□□□ 1.29
COL7A1-205ENST00000465238 TAOK3Q9H2K8 898 aa23.08■■□□□ 1.29
COL7A1-205ENST00000465238 KLRG2A4D1S0 409 aaPredicted RBP23.07■■□□□ 1.28
COL7A1-205ENST00000465238 NPR1P16066 1061 aa23.07■■□□□ 1.28
COL7A1-205ENST00000465238 HLFQ16534 295 aa23.07■■□□□ 1.28
COL7A1-205ENST00000465238 ERFEQ4G0M1 354 aa23.07■■□□□ 1.28
COL7A1-205ENST00000465238 DNAJC5GQ8N7S2 189 aa23.07■■□□□ 1.28
COL7A1-205ENST00000465238 SMC1BQ8NDV3 1235 aa23.07■■□□□ 1.28
COL7A1-205ENST00000465238 ERVV-1B6SEH8 477 aa23.05■■□□□ 1.28
COL7A1-205ENST00000465238 CALD1Q05682 793 aaKnown RBP23.05■■□□□ 1.28
COL7A1-205ENST00000465238 LAS1LQ9Y4W2 734 aaKnown RBP23.05■■□□□ 1.28
COL7A1-205ENST00000465238 NUP98P52948 1817 aa23.05■■□□□ 1.28
COL7A1-205ENST00000465238 NCBP3Q53F19 620 aaKnown RBP23.04■■□□□ 1.28
COL7A1-205ENST00000465238 NGEFQ8N5V2 710 aa23.04■■□□□ 1.28
COL7A1-205ENST00000465238 BABAM1Q9NWV8 329 aa23.04■■□□□ 1.28
COL7A1-205ENST00000465238 TSPYL4Q9UJ04 414 aa23.04■■□□□ 1.28
COL7A1-205ENST00000465238 FAM177BA6PVY3 158 aa23.03■■□□□ 1.28
COL7A1-205ENST00000465238 GTF2E1P29083 439 aaPredicted RBP23.03■■□□□ 1.28
COL7A1-205ENST00000465238 CCDC27Q2M243 656 aa23.03■■□□□ 1.28
COL7A1-205ENST00000465238 KIF6Q6ZMV9 814 aa23.03■■□□□ 1.28
COL7A1-205ENST00000465238 C7orf43Q8WVR3 580 aa23.03■■□□□ 1.28
COL7A1-205ENST00000465238 SALL2Q9Y467 1007 aaPredicted RBP23.03■■□□□ 1.28
COL7A1-205ENST00000465238 MAP3K15Q6ZN16 1313 aa23.03■■□□□ 1.28
COL7A1-205ENST00000465238 CCDC93Q567U6 631 aa23.02■■□□□ 1.28
COL7A1-205ENST00000465238 NYXQ9GZU5 481 aa23.02■■□□□ 1.28
COL7A1-205ENST00000465238 ERBB4Q15303 1308 aa23.02■■□□□ 1.28
COL7A1-205ENST00000465238 MYL6BP14649 208 aa23.01■■□□□ 1.27
COL7A1-205ENST00000465238 ALDH1B1P30837 517 aa23■■□□□ 1.27
COL7A1-205ENST00000465238 TTLL7Q6ZT98 887 aa23■■□□□ 1.27
COL7A1-205ENST00000465238 WWC1Q8IX03 1113 aa23■■□□□ 1.27
COL7A1-205ENST00000465238 POTECB2RU33 542 aa22.99■■□□□ 1.27
COL7A1-205ENST00000465238 CHL1O00533 1208 aa22.99■■□□□ 1.27
COL7A1-205ENST00000465238 CFAP44Q96MT7 982 aa22.99■■□□□ 1.27
COL7A1-205ENST00000465238 GNAI1P63096 354 aa22.98■■□□□ 1.27
COL7A1-205ENST00000465238 HTRA3P83110 453 aa22.98■■□□□ 1.27
COL7A1-205ENST00000465238 IBTKQ9P2D0 1353 aaPredicted RBP22.98■■□□□ 1.27
COL7A1-205ENST00000465238 FKBP4Q02790 459 aaKnown RBP eCLIP22.97■■□□□ 1.27
COL7A1-205ENST00000465238 CRY2Q49AN0 593 aa22.97■■□□□ 1.27
COL7A1-205ENST00000465238 RTKN2Q8IZC4 609 aa22.97■■□□□ 1.27
COL7A1-205ENST00000465238 KLRG1Q96E93 195 aa22.97■■□□□ 1.27
COL7A1-205ENST00000465238 ZBTB3Q9H5J0 574 aa22.97■■□□□ 1.27
COL7A1-205ENST00000465238 IFT57Q9NWB7 429 aa22.97■■□□□ 1.27
COL7A1-205ENST00000465238 IFFO2Q5TF58 517 aa22.96■■□□□ 1.27
COL7A1-205ENST00000465238 NUTM1Q86Y26 1132 aa22.96■■□□□ 1.27
Retrieved 100 of 20,778 RNA–protein pairs in 59 ms