RNA–Protein interactions for RNA: ENST00000463727.1

PTPRE-205, Transcript of protein tyrosine phosphatase, receptor type E, humanhuman

TSL 1 (best)

Gene PTPRE, Length 3,944 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPRE-205ENST00000463727 RBM33Q96EV2 1170 aaKnown RBP12.42□□□□□ -0.42
PTPRE-205ENST00000463727 PDIA4P13667 645 aaKnown RBP12.42□□□□□ -0.42
PTPRE-205ENST00000463727 ERBB4Q15303 1308 aa12.41□□□□□ -0.42
PTPRE-205ENST00000463727 SGSM2O43147 1006 aa12.41□□□□□ -0.42
PTPRE-205ENST00000463727 SF3A1Q15459 793 aaKnown RBP12.41□□□□□ -0.42
PTPRE-205ENST00000463727 UVSSAQ2YD98 709 aa12.41□□□□□ -0.42
PTPRE-205ENST00000463727 DNAJC2Q99543 621 aaKnown RBP12.41□□□□□ -0.42
PTPRE-205ENST00000463727 USP6P35125 1406 aa12.41□□□□□ -0.42
PTPRE-205ENST00000463727 NBPF7P0C2Y1 421 aaPredicted RBP12.41□□□□□ -0.42
PTPRE-205ENST00000463727 SSH3Q8TE77 659 aa12.41□□□□□ -0.42
PTPRE-205ENST00000463727 NEUROD6Q96NK8 337 aa12.41□□□□□ -0.42
PTPRE-205ENST00000463727 HSPA4P34932 840 aa12.41□□□□□ -0.42
PTPRE-205ENST00000463727 NUP62CLQ9H1M0 184 aa12.41□□□□□ -0.42
PTPRE-205ENST00000463727 TNMDQ9H2S6 317 aa12.41□□□□□ -0.42
PTPRE-205ENST00000463727 STAP2Q9UGK3 403 aa12.41□□□□□ -0.42
PTPRE-205ENST00000463727 ADCY5O95622 1261 aa12.4□□□□□ -0.42
PTPRE-205ENST00000463727 SYT1P21579 422 aa12.4□□□□□ -0.42
PTPRE-205ENST00000463727 UNC5CLQ8IV45 518 aa12.4□□□□□ -0.42
PTPRE-205ENST00000463727 TRIM5Q9C035 493 aa12.4□□□□□ -0.42
PTPRE-205ENST00000463727 TTC41PQ6P2S7 1318 aa12.4□□□□□ -0.42
PTPRE-205ENST00000463727 IGSF1Q8N6C5 1336 aa12.4□□□□□ -0.42
PTPRE-205ENST00000463727 F13A1P00488 732 aa12.4□□□□□ -0.43
PTPRE-205ENST00000463727 FOSBP53539 338 aa12.4□□□□□ -0.43
PTPRE-205ENST00000463727 SPATA32Q96LK8 384 aa12.4□□□□□ -0.43
PTPRE-205ENST00000463727 HYPKQ9NX55 129 aa12.4□□□□□ -0.43
PTPRE-205ENST00000463727 SNX14Q9Y5W7 946 aa12.4□□□□□ -0.43
PTPRE-205ENST00000463727 RAD50Q92878 1312 aa12.39□□□□□ -0.43
PTPRE-205ENST00000463727 ZFP91-CNTFA0A0A6YYC7 529 aaPredicted RBP12.39□□□□□ -0.43
PTPRE-205ENST00000463727 EPB41L2O43491 1005 aaKnown RBP12.39□□□□□ -0.43
PTPRE-205ENST00000463727 CPA1P15085 419 aa12.39□□□□□ -0.43
PTPRE-205ENST00000463727 CUL4AQ13619 759 aa12.39□□□□□ -0.43
PTPRE-205ENST00000463727 GIMAP6Q6P9H5 292 aa12.39□□□□□ -0.43
PTPRE-205ENST00000463727 PA2G4Q9UQ80 394 aaKnown RBP12.39□□□□□ -0.43
PTPRE-205ENST00000463727 SSH2Q76I76 1423 aa12.39□□□□□ -0.43
PTPRE-205ENST00000463727 MAP3K11Q16584 847 aa12.39□□□□□ -0.43
PTPRE-205ENST00000463727 TAF7LQ5H9L4 462 aa12.39□□□□□ -0.43
PTPRE-205ENST00000463727 NECAB1Q8N987 351 aa12.39□□□□□ -0.43
PTPRE-205ENST00000463727 CHMP4CQ96CF2 233 aa12.39□□□□□ -0.43
PTPRE-205ENST00000463727 SPATA31D1Q6ZQQ2 1576 aa12.39□□□□□ -0.43
PTPRE-205ENST00000463727 LARP1Q6PKG0 1096 aaKnown RBP12.39□□□□□ -0.43
PTPRE-205ENST00000463727 ATP10DQ9P241 1426 aa12.38□□□□□ -0.43
PTPRE-205ENST00000463727 GADD45BO75293 160 aaPredicted RBP12.38□□□□□ -0.43
PTPRE-205ENST00000463727 ALDH1L1O75891 902 aa12.38□□□□□ -0.43
PTPRE-205ENST00000463727 GNL2Q13823 731 aaKnown RBP12.38□□□□□ -0.43
PTPRE-205ENST00000463727 CAMK4Q16566 473 aa12.38□□□□□ -0.43
PTPRE-205ENST00000463727 ANKLE2Q86XL3 938 aa12.38□□□□□ -0.43
PTPRE-205ENST00000463727 DLC1Q96QB1 1528 aa12.38□□□□□ -0.43
PTPRE-205ENST00000463727 CYP2E1P05181 493 aaPredicted RBP12.38□□□□□ -0.43
PTPRE-205ENST00000463727 KCNA6P17658 529 aa12.38□□□□□ -0.43
PTPRE-205ENST00000463727 DNM1Q05193 864 aaKnown RBP12.38□□□□□ -0.43
PTPRE-205ENST00000463727 KRT32Q14532 448 aa12.38□□□□□ -0.43
PTPRE-205ENST00000463727 AKAP4Q5JQC9 854 aa12.38□□□□□ -0.43
PTPRE-205ENST00000463727 KSR2Q6VAB6 950 aa12.38□□□□□ -0.43
PTPRE-205ENST00000463727 CCDC73Q6ZRK6 1079 aa12.38□□□□□ -0.43
PTPRE-205ENST00000463727 LGR6Q9HBX8 967 aa12.38□□□□□ -0.43
PTPRE-205ENST00000463727 RBM8AQ9Y5S9 174 aaKnown RBP12.38□□□□□ -0.43
PTPRE-205ENST00000463727 SCAND2PQ9GZW5 306 aaPredicted RBP12.38□□□□□ -0.43
PTPRE-205ENST00000463727 CEBPZQ03701 1054 aaKnown RBP12.37□□□□□ -0.43
PTPRE-205ENST00000463727 ZNF830Q96NB3 372 aaPredicted RBP12.37□□□□□ -0.43
PTPRE-205ENST00000463727 ZDHHC9Q9Y397 364 aa12.37□□□□□ -0.43
PTPRE-205ENST00000463727 CPS1P31327 1500 aa12.37□□□□□ -0.43
PTPRE-205ENST00000463727 HOXB7P09629 217 aa12.37□□□□□ -0.43
PTPRE-205ENST00000463727 CWF19L2Q2TBE0 894 aaKnown RBP12.37□□□□□ -0.43
PTPRE-205ENST00000463727 IP6K1Q92551 441 aa12.37□□□□□ -0.43
PTPRE-205ENST00000463727 LRRC59Q96AG4 307 aaKnown RBP12.37□□□□□ -0.43
PTPRE-205ENST00000463727 VIRMAQ69YN4 1812 aaKnown RBP12.37□□□□□ -0.43
PTPRE-205ENST00000463727 GRM8O00222 908 aa12.36□□□□□ -0.43
PTPRE-205ENST00000463727 TATP17735 454 aaPredicted RBP12.36□□□□□ -0.43
PTPRE-205ENST00000463727 VPS53Q5VIR6 699 aa12.36□□□□□ -0.43
PTPRE-205ENST00000463727 TCEANC2Q96MN5 208 aa12.36□□□□□ -0.43
PTPRE-205ENST00000463727 TFIP11Q9UBB9 837 aaKnown RBP12.36□□□□□ -0.43
PTPRE-205ENST00000463727 A0A0G2JS52 829 aa12.36□□□□□ -0.43
PTPRE-205ENST00000463727 EIF4A1P60842 406 aaKnown RBP12.36□□□□□ -0.43
PTPRE-205ENST00000463727 LRRFIP1Q32MZ4 808 aaKnown RBP12.36□□□□□ -0.43
PTPRE-205ENST00000463727 LINS1Q8NG48 757 aa12.36□□□□□ -0.43
PTPRE-205ENST00000463727 NSFL1CQ9UNZ2 370 aaKnown RBP12.36□□□□□ -0.43
PTPRE-205ENST00000463727 ZC3H6P61129 1189 aaKnown RBP12.35□□□□□ -0.43
PTPRE-205ENST00000463727 TPM4P67936 248 aa12.35□□□□□ -0.43
PTPRE-205ENST00000463727 ZNF592Q92610 1267 aa12.35□□□□□ -0.43
PTPRE-205ENST00000463727 MYD88Q99836 296 aa12.35□□□□□ -0.43
PTPRE-205ENST00000463727 TTC12Q9H892 705 aaPredicted RBP12.35□□□□□ -0.43
PTPRE-205ENST00000463727 RGS12O14924 1447 aa12.35□□□□□ -0.43
PTPRE-205ENST00000463727 DYNC1I1O14576 645 aa12.35□□□□□ -0.43
PTPRE-205ENST00000463727 DDX11Q96FC9 970 aa12.35□□□□□ -0.43
PTPRE-205ENST00000463727 CKAP2LQ8IYA6 745 aa12.35□□□□□ -0.43
PTPRE-205ENST00000463727 IGF2BP2Q9Y6M1 599 aaKnown RBP eCLIP12.35□□□□□ -0.43
PTPRE-205ENST00000463727 ZNF500O60304 480 aaPredicted RBP12.34□□□□□ -0.43
PTPRE-205ENST00000463727 CFAP45Q9UL16 551 aa12.34□□□□□ -0.43
PTPRE-205ENST00000463727 CRB1P82279 1406 aa12.34□□□□□ -0.43
PTPRE-205ENST00000463727 KINO60870 393 aaKnown RBP12.34□□□□□ -0.43
PTPRE-205ENST00000463727 MAP2P11137 1827 aaKnown RBP12.34□□□□□ -0.43
PTPRE-205ENST00000463727 CPLX1O14810 134 aa12.34□□□□□ -0.43
PTPRE-205ENST00000463727 DTNBO60941 627 aa12.34□□□□□ -0.43
PTPRE-205ENST00000463727 NMIQ13287 307 aaPredicted RBP12.34□□□□□ -0.43
PTPRE-205ENST00000463727 NOLC1Q14978 699 aaKnown RBP eCLIP12.34□□□□□ -0.43
PTPRE-205ENST00000463727 NBPF6Q5VWK0 638 aa12.34□□□□□ -0.43
PTPRE-205ENST00000463727 CREB3L3Q68CJ9 461 aa12.34□□□□□ -0.43
PTPRE-205ENST00000463727 RUFY3Q7L099 469 aa12.34□□□□□ -0.43
PTPRE-205ENST00000463727 NBPF4Q96M43 638 aa12.34□□□□□ -0.43
PTPRE-205ENST00000463727 SDF4Q9BRK5 362 aa12.34□□□□□ -0.43
Retrieved 100 of 20,778 RNA–protein pairs in 10.9 ms