RNA–Protein interactions for RNA: ENST00000460593.1

CPSF3-202, Transcript of cleavage and polyadenylation specific factor 3, humanhuman

TSL 1 (best) BASIC

Gene CPSF3, Length 3,157 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPSF3-202ENST00000460593 CPSF1Q10570 1443 aaKnown RBP13.91□□□□□ -0.18
CPSF3-202ENST00000460593 NR1I2O75469 434 aa13.91□□□□□ -0.18
CPSF3-202ENST00000460593 CEBPZQ03701 1054 aaKnown RBP13.91□□□□□ -0.18
CPSF3-202ENST00000460593 FILIP1Q7Z7B0 1213 aa13.91□□□□□ -0.18
CPSF3-202ENST00000460593 LRRN4CLQ8ND94 238 aa13.91□□□□□ -0.18
CPSF3-202ENST00000460593 ERCC4Q92889 916 aaPredicted RBP13.91□□□□□ -0.18
CPSF3-202ENST00000460593 MORC2Q9Y6X9 1032 aaPredicted RBP13.91□□□□□ -0.18
CPSF3-202ENST00000460593 KIF20BQ96Q89 1820 aa13.91□□□□□ -0.18
CPSF3-202ENST00000460593 CDK11BP21127 795 aaKnown RBP13.91□□□□□ -0.18
CPSF3-202ENST00000460593 FOSBP53539 338 aa13.91□□□□□ -0.18
CPSF3-202ENST00000460593 USP16Q9Y5T5 823 aa13.91□□□□□ -0.18
CPSF3-202ENST00000460593 GOLGA6L4A6NEF3 574 aa13.9□□□□□ -0.18
CPSF3-202ENST00000460593 ZNF165P49910 485 aa13.9□□□□□ -0.18
CPSF3-202ENST00000460593 GABPB1Q06547 395 aaPredicted RBP13.9□□□□□ -0.18
CPSF3-202ENST00000460593 GTF3C6Q969F1 213 aa13.9□□□□□ -0.18
CPSF3-202ENST00000460593 DDX11Q96FC9 970 aa13.9□□□□□ -0.18
CPSF3-202ENST00000460593 TPCN1Q9ULQ1 816 aa13.9□□□□□ -0.18
CPSF3-202ENST00000460593 RBM6P78332 1123 aaKnown RBP13.9□□□□□ -0.18
CPSF3-202ENST00000460593 PPP1R42Q7Z4L9 355 aa13.9□□□□□ -0.18
CPSF3-202ENST00000460593 STAG3Q9UJ98 1225 aa13.9□□□□□ -0.18
CPSF3-202ENST00000460593 PLA2G4DQ86XP0 818 aa13.89□□□□□ -0.19
CPSF3-202ENST00000460593 KRT222Q8N1A0 295 aa13.89□□□□□ -0.19
CPSF3-202ENST00000460593 TAF6LQ9Y6J9 622 aa13.89□□□□□ -0.19
CPSF3-202ENST00000460593 SSH2Q76I76 1423 aa13.89□□□□□ -0.19
CPSF3-202ENST00000460593 ZBTB9Q96C00 473 aa13.89□□□□□ -0.19
CPSF3-202ENST00000460593 STK31Q9BXU1 1019 aa13.89□□□□□ -0.19
CPSF3-202ENST00000460593 USP44Q9H0E7 712 aa13.89□□□□□ -0.19
CPSF3-202ENST00000460593 SOS1Q07889 1333 aaPredicted RBP13.89□□□□□ -0.19
CPSF3-202ENST00000460593 PPFIA3O75145 1194 aa13.89□□□□□ -0.19
CPSF3-202ENST00000460593 KRT85P78386 507 aa13.89□□□□□ -0.19
CPSF3-202ENST00000460593 MTHFSDQ2M296 383 aaKnown RBP13.89□□□□□ -0.19
CPSF3-202ENST00000460593 BICD2Q8TD16 824 aa13.89□□□□□ -0.19
CPSF3-202ENST00000460593 ABCA9Q8IUA7 1624 aa13.89□□□□□ -0.19
CPSF3-202ENST00000460593 RHPN1Q8TCX5 695 aa13.88□□□□□ -0.19
CPSF3-202ENST00000460593 ZNF446Q9NWS9 450 aa13.88□□□□□ -0.19
CPSF3-202ENST00000460593 UBTFL1P0CB47 393 aaPredicted RBP13.88□□□□□ -0.19
CPSF3-202ENST00000460593 SPATA32Q96LK8 384 aa13.88□□□□□ -0.19
CPSF3-202ENST00000460593 PHAXQ9H814 394 aaKnown RBP13.88□□□□□ -0.19
CPSF3-202ENST00000460593 GNAI3P08754 354 aa13.87□□□□□ -0.19
CPSF3-202ENST00000460593 LARP1Q6PKG0 1096 aaKnown RBP13.87□□□□□ -0.19
CPSF3-202ENST00000460593 C11orf57Q6ZUT1 292 aaPredicted RBP13.87□□□□□ -0.19
CPSF3-202ENST00000460593 TXNDC2Q86VQ3 553 aa13.87□□□□□ -0.19
CPSF3-202ENST00000460593 CPS1P31327 1500 aa13.87□□□□□ -0.19
CPSF3-202ENST00000460593 ERBB3P21860 1342 aa13.87□□□□□ -0.19
CPSF3-202ENST00000460593 FRMPD1Q5SYB0 1578 aa13.87□□□□□ -0.19
CPSF3-202ENST00000460593 CDK12Q9NYV4 1490 aaPredicted RBP13.87□□□□□ -0.19
CPSF3-202ENST00000460593 SRGAP3O43295 1099 aa13.87□□□□□ -0.19
CPSF3-202ENST00000460593 HAP1P54257 671 aaPredicted RBP13.87□□□□□ -0.19
CPSF3-202ENST00000460593 ZNF397Q8NF99 534 aaPredicted RBP13.87□□□□□ -0.19
CPSF3-202ENST00000460593 PGBD1Q96JS3 809 aa13.87□□□□□ -0.19
CPSF3-202ENST00000460593 PAXBP1Q9Y5B6 917 aa13.87□□□□□ -0.19
CPSF3-202ENST00000460593 SKILP12757 684 aa13.86□□□□□ -0.19
CPSF3-202ENST00000460593 PTPN14Q15678 1187 aa13.86□□□□□ -0.19
CPSF3-202ENST00000460593 LRRC8AQ8IWT6 810 aa13.86□□□□□ -0.19
CPSF3-202ENST00000460593 IL17RAQ96F46 866 aa13.86□□□□□ -0.19
CPSF3-202ENST00000460593 CHMP4AQ9BY43 222 aa13.86□□□□□ -0.19
CPSF3-202ENST00000460593 CYP46A1Q9Y6A2 500 aa13.86□□□□□ -0.19
CPSF3-202ENST00000460593 RAB11FIP3O75154 756 aa13.86□□□□□ -0.19
CPSF3-202ENST00000460593 CAPN2P17655 700 aa13.86□□□□□ -0.19
CPSF3-202ENST00000460593 CRB1P82279 1406 aa13.86□□□□□ -0.19
CPSF3-202ENST00000460593 CNTROBQ8N137 903 aa13.86□□□□□ -0.19
CPSF3-202ENST00000460593 FTOQ9C0B1 505 aaKnown RBP eCLIP13.86□□□□□ -0.19
CPSF3-202ENST00000460593 ERCC6LQ2NKX8 1250 aa13.85□□□□□ -0.19
CPSF3-202ENST00000460593 GORABQ5T7V8 394 aa13.85□□□□□ -0.19
CPSF3-202ENST00000460593 NUDT16Q96DE0 195 aaKnown RBP13.85□□□□□ -0.19
CPSF3-202ENST00000460593 PIK3C2BO00750 1634 aa13.85□□□□□ -0.19
CPSF3-202ENST00000460593 NBPF7P0C2Y1 421 aaPredicted RBP13.85□□□□□ -0.19
CPSF3-202ENST00000460593 TAF3Q5VWG9 929 aa13.85□□□□□ -0.19
CPSF3-202ENST00000460593 LEO1Q8WVC0 666 aaPredicted RBP13.85□□□□□ -0.19
CPSF3-202ENST00000460593 ATP7BP35670 1465 aa13.85□□□□□ -0.19
CPSF3-202ENST00000460593 ARAP3Q8WWN8 1544 aa13.85□□□□□ -0.19
CPSF3-202ENST00000460593 OS9Q13438 667 aaPredicted RBP13.85□□□□□ -0.19
CPSF3-202ENST00000460593 TDRD7Q8NHU6 1098 aaKnown RBP13.85□□□□□ -0.19
CPSF3-202ENST00000460593 FAM227BQ96M60 508 aa13.85□□□□□ -0.19
CPSF3-202ENST00000460593 MYO5BQ9ULV0 1848 aa13.84□□□□□ -0.19
CPSF3-202ENST00000460593 CCDC69A6NI79 296 aa13.84□□□□□ -0.19
CPSF3-202ENST00000460593 JAK2O60674 1132 aa13.84□□□□□ -0.19
CPSF3-202ENST00000460593 ANXA1P04083 346 aa13.84□□□□□ -0.19
CPSF3-202ENST00000460593 MAP3K19Q56UN5 1328 aa13.84□□□□□ -0.19
CPSF3-202ENST00000460593 SYCP1Q15431 976 aa13.84□□□□□ -0.19
CPSF3-202ENST00000460593 TIGD1Q96MW7 591 aa13.84□□□□□ -0.19
CPSF3-202ENST00000460593 CLSTN2Q9H4D0 955 aa13.84□□□□□ -0.19
CPSF3-202ENST00000460593 TUBGCP6Q96RT7 1819 aa13.84□□□□□ -0.19
CPSF3-202ENST00000460593 UHRF1BP1LA0JNW5 1464 aa13.83□□□□□ -0.2
CPSF3-202ENST00000460593 WASLO00401 505 aaPredicted RBP13.83□□□□□ -0.2
CPSF3-202ENST00000460593 EIF2S2P20042 333 aaKnown RBP13.83□□□□□ -0.2
CPSF3-202ENST00000460593 VPS53Q5VIR6 699 aa13.83□□□□□ -0.2
CPSF3-202ENST00000460593 GOLGA6L19H0YKK7 550 aa13.83□□□□□ -0.2
CPSF3-202ENST00000460593 POLR3GO15318 223 aaPredicted RBP13.83□□□□□ -0.2
CPSF3-202ENST00000460593 CERS3Q8IU89 383 aa13.83□□□□□ -0.2
CPSF3-202ENST00000460593 ZSWIM6Q9HCJ5 1215 aa13.83□□□□□ -0.2
CPSF3-202ENST00000460593 PA2G4Q9UQ80 394 aaKnown RBP13.83□□□□□ -0.2
CPSF3-202ENST00000460593 RBM8AQ9Y5S9 174 aaKnown RBP13.83□□□□□ -0.2
CPSF3-202ENST00000460593 IFIT2P09913 472 aaKnown RBP13.82□□□□□ -0.2
CPSF3-202ENST00000460593 SSH3Q8TE77 659 aa13.82□□□□□ -0.2
CPSF3-202ENST00000460593 HECW2Q9P2P5 1572 aa13.82□□□□□ -0.2
CPSF3-202ENST00000460593 EDC4Q6P2E9 1401 aaKnown RBP13.82□□□□□ -0.2
CPSF3-202ENST00000460593 TTC21AQ8NDW8 1320 aa13.82□□□□□ -0.2
CPSF3-202ENST00000460593 CCDC66A2RUB6 948 aa13.82□□□□□ -0.2
CPSF3-202ENST00000460593 CCZ1BP86790 482 aa13.81□□□□□ -0.2
Retrieved 100 of 20,778 RNA–protein pairs in 18.6 ms