RNA–Protein interactions for RNA: ENST00000460333.5

VPS13D-202, Transcript of vacuolar protein sorting 13 homolog D, humanhuman

TSL 2

Gene VPS13D, Length 4,910 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13D-202ENST00000460333 TOPAZ1Q8N9V7 1692 aa7.36□□□□□ -1.23
VPS13D-202ENST00000460333 ANKRD44Q8N8A2 993 aa7.36□□□□□ -1.23
VPS13D-202ENST00000460333 DNAAF4Q8WXU2 420 aa7.36□□□□□ -1.23
VPS13D-202ENST00000460333 FMNL2Q96PY5 1086 aa7.36□□□□□ -1.23
VPS13D-202ENST00000460333 ZHX1Q9UKY1 873 aaPredicted RBP7.36□□□□□ -1.23
VPS13D-202ENST00000460333 H3BQV1 296 aa7.35□□□□□ -1.23
VPS13D-202ENST00000460333 IFFO2Q5TF58 517 aa7.35□□□□□ -1.23
VPS13D-202ENST00000460333 ERC1Q8IUD2 1116 aa7.35□□□□□ -1.23
VPS13D-202ENST00000460333 IL17REQ8NFR9 667 aa7.35□□□□□ -1.23
VPS13D-202ENST00000460333 CCDC192P0DO97 292 aa7.35□□□□□ -1.23
VPS13D-202ENST00000460333 SF3A1Q15459 793 aaKnown RBP7.35□□□□□ -1.23
VPS13D-202ENST00000460333 PDIA4P13667 645 aaKnown RBP7.35□□□□□ -1.23
VPS13D-202ENST00000460333 HSP90B1P14625 803 aaKnown RBP7.35□□□□□ -1.23
VPS13D-202ENST00000460333 TAF7LQ5H9L4 462 aa7.35□□□□□ -1.23
VPS13D-202ENST00000460333 TNS3Q68CZ2 1445 aa7.35□□□□□ -1.23
VPS13D-202ENST00000460333 LARP1Q6PKG0 1096 aaKnown RBP7.35□□□□□ -1.23
VPS13D-202ENST00000460333 LRRCC1Q9C099 1032 aa7.35□□□□□ -1.23
VPS13D-202ENST00000460333 USP19O94966 1318 aa7.35□□□□□ -1.23
VPS13D-202ENST00000460333 CHD2O14647 1828 aaKnown RBP7.35□□□□□ -1.23
VPS13D-202ENST00000460333 KIF1AQ12756 1690 aa7.35□□□□□ -1.23
VPS13D-202ENST00000460333 EIF3JO75822 258 aaKnown RBP7.35□□□□□ -1.23
VPS13D-202ENST00000460333 ZCRB1Q8TBF4 217 aaKnown RBP7.35□□□□□ -1.23
VPS13D-202ENST00000460333 CABLES1Q8TDN4 633 aa7.35□□□□□ -1.23
VPS13D-202ENST00000460333 SPATA31A3Q5VYP0 1347 aa7.35□□□□□ -1.23
VPS13D-202ENST00000460333 RAB11FIP3O75154 756 aa7.34□□□□□ -1.23
VPS13D-202ENST00000460333 AIMP1Q12904 312 aaKnown RBP7.34□□□□□ -1.23
VPS13D-202ENST00000460333 KRT24Q2M2I5 525 aa7.34□□□□□ -1.23
VPS13D-202ENST00000460333 UVSSAQ2YD98 709 aa7.34□□□□□ -1.23
VPS13D-202ENST00000460333 TRIM5Q9C035 493 aa7.34□□□□□ -1.23
VPS13D-202ENST00000460333 ERBB3P21860 1342 aa7.34□□□□□ -1.23
VPS13D-202ENST00000460333 WDR33Q9C0J8 1336 aaKnown RBP7.34□□□□□ -1.23
VPS13D-202ENST00000460333 F6X3S4 739 aa7.34□□□□□ -1.23
VPS13D-202ENST00000460333 SNRPA1P09661 255 aaKnown RBP7.34□□□□□ -1.23
VPS13D-202ENST00000460333 CDR1P51861 262 aa7.34□□□□□ -1.23
VPS13D-202ENST00000460333 G3BP1Q13283 466 aaKnown RBP eCLIP7.34□□□□□ -1.23
VPS13D-202ENST00000460333 BICD2Q8TD16 824 aa7.34□□□□□ -1.23
VPS13D-202ENST00000460333 TSR1Q2NL82 804 aaKnown RBP7.34□□□□□ -1.23
VPS13D-202ENST00000460333 TBC1D2Q9BYX2 928 aa7.34□□□□□ -1.23
VPS13D-202ENST00000460333 PCDH11XQ9BZA7 1347 aa7.34□□□□□ -1.23
VPS13D-202ENST00000460333 PCDH11YQ9BZA8 1340 aa7.34□□□□□ -1.23
VPS13D-202ENST00000460333 ERC2O15083 957 aa7.34□□□□□ -1.23
VPS13D-202ENST00000460333 ALDH1L1O75891 902 aa7.34□□□□□ -1.23
VPS13D-202ENST00000460333 IL2RBP14784 551 aa7.34□□□□□ -1.23
VPS13D-202ENST00000460333 KLHL40Q2TBA0 621 aa7.34□□□□□ -1.23
VPS13D-202ENST00000460333 BMP2KLQ5H9B9 411 aa7.34□□□□□ -1.23
VPS13D-202ENST00000460333 PPP4R3BQ5MIZ7 849 aa7.34□□□□□ -1.23
VPS13D-202ENST00000460333 DDX54Q8TDD1 881 aaKnown RBP7.34□□□□□ -1.23
VPS13D-202ENST00000460333 SURF6O75683 361 aaKnown RBP7.33□□□□□ -1.24
VPS13D-202ENST00000460333 EIF4A1P60842 406 aaKnown RBP7.33□□□□□ -1.24
VPS13D-202ENST00000460333 FAM107BQ9H098 131 aa7.33□□□□□ -1.24
VPS13D-202ENST00000460333 NRKQ7Z2Y5 1582 aa7.33□□□□□ -1.24
VPS13D-202ENST00000460333 H0YHG0 523 aa7.33□□□□□ -1.24
VPS13D-202ENST00000460333 ZKSCAN1P17029 563 aaPredicted RBP7.33□□□□□ -1.24
VPS13D-202ENST00000460333 CCDC73Q6ZRK6 1079 aa7.33□□□□□ -1.24
VPS13D-202ENST00000460333 DCTPP1Q9H773 170 aa7.33□□□□□ -1.24
VPS13D-202ENST00000460333 ERLIN1O75477 346 aa7.33□□□□□ -1.24
VPS13D-202ENST00000460333 BRINP3Q76B58 766 aa7.33□□□□□ -1.24
VPS13D-202ENST00000460333 TEX13AQ9BXU3 409 aaPredicted RBP7.33□□□□□ -1.24
VPS13D-202ENST00000460333 LGR6Q9HBX8 967 aa7.33□□□□□ -1.24
VPS13D-202ENST00000460333 HOOK1Q9UJC3 728 aaKnown RBP7.33□□□□□ -1.24
VPS13D-202ENST00000460333 CRB1P82279 1406 aa7.33□□□□□ -1.24
VPS13D-202ENST00000460333 IFIT2P09913 472 aaKnown RBP7.33□□□□□ -1.24
VPS13D-202ENST00000460333 RBM25P49756 843 aaKnown RBP7.33□□□□□ -1.24
VPS13D-202ENST00000460333 CTR9Q6PD62 1173 aa7.33□□□□□ -1.24
VPS13D-202ENST00000460333 CLASRPQ8N2M8 674 aaKnown RBP7.33□□□□□ -1.24
VPS13D-202ENST00000460333 RUFY1Q96T51 708 aa7.33□□□□□ -1.24
VPS13D-202ENST00000460333 CHPF2Q9P2E5 772 aa7.33□□□□□ -1.24
VPS13D-202ENST00000460333 MEIS3Q99687 375 aa7.32□□□□□ -1.24
VPS13D-202ENST00000460333 TMOD3Q9NYL9 352 aa7.32□□□□□ -1.24
VPS13D-202ENST00000460333 IRX3P78415 501 aaPredicted RBP7.32□□□□□ -1.24
VPS13D-202ENST00000460333 C8orf34Q49A92 452 aa7.32□□□□□ -1.24
VPS13D-202ENST00000460333 KSR2Q6VAB6 950 aa7.32□□□□□ -1.24
VPS13D-202ENST00000460333 DDX17Q92841 729 aaKnown RBP7.32□□□□□ -1.24
VPS13D-202ENST00000460333 TBC1D32Q96NH3 1257 aa7.32□□□□□ -1.24
VPS13D-202ENST00000460333 SLC52A2Q9HAB3 445 aa7.32□□□□□ -1.24
VPS13D-202ENST00000460333 RRAGDQ9NQL2 400 aaPredicted RBP7.32□□□□□ -1.24
VPS13D-202ENST00000460333 MST1RQ04912 1400 aa7.32□□□□□ -1.24
VPS13D-202ENST00000460333 PI4KAP2A4QPH2 592 aa7.32□□□□□ -1.24
VPS13D-202ENST00000460333 CEP85Q6P2H3 762 aa7.32□□□□□ -1.24
VPS13D-202ENST00000460333 SKAP1Q86WV1 359 aa7.32□□□□□ -1.24
VPS13D-202ENST00000460333 PI4KAP1Q8N8J0 262 aa7.32□□□□□ -1.24
VPS13D-202ENST00000460333 ZNF335Q9H4Z2 1342 aaPredicted RBP7.32□□□□□ -1.24
VPS13D-202ENST00000460333 SRGAP3O43295 1099 aa7.32□□□□□ -1.24
VPS13D-202ENST00000460333 PDCP20941 246 aa7.32□□□□□ -1.24
VPS13D-202ENST00000460333 ATP8B2P98198 1209 aa7.32□□□□□ -1.24
VPS13D-202ENST00000460333 TNPO1Q92973 898 aaKnown RBP7.32□□□□□ -1.24
VPS13D-202ENST00000460333 RILPL2Q969X0 211 aa7.32□□□□□ -1.24
VPS13D-202ENST00000460333 ZNF790Q6PG37 636 aa7.31□□□□□ -1.24
VPS13D-202ENST00000460333 KIF1BPQ96EK5 621 aa7.31□□□□□ -1.24
VPS13D-202ENST00000460333 FEZ1Q99689 392 aa7.31□□□□□ -1.24
VPS13D-202ENST00000460333 DDX21Q9NR30 783 aaKnown RBP eCLIP7.31□□□□□ -1.24
VPS13D-202ENST00000460333 ZKSCAN5Q9Y2L8 839 aa7.31□□□□□ -1.24
VPS13D-202ENST00000460333 CHMP3Q9Y3E7 222 aa7.31□□□□□ -1.24
VPS13D-202ENST00000460333 LRRFIP2Q9Y608 721 aaKnown RBP7.31□□□□□ -1.24
VPS13D-202ENST00000460333 NEMFO60524 1076 aa7.31□□□□□ -1.24
VPS13D-202ENST00000460333 MYL6BP14649 208 aa7.31□□□□□ -1.24
VPS13D-202ENST00000460333 PHKG2P15735 406 aa7.31□□□□□ -1.24
VPS13D-202ENST00000460333 FOXD4L6Q3SYB3 417 aaPredicted RBP7.31□□□□□ -1.24
VPS13D-202ENST00000460333 NBPF14Q5TI25 921 aa7.31□□□□□ -1.24
VPS13D-202ENST00000460333 FOXD4L3Q6VB84 417 aaPredicted RBP7.31□□□□□ -1.24
Retrieved 100 of 20,778 RNA–protein pairs in 62.5 ms