RNA–Protein interactions for RNA: ENST00000459775.5

USP39-210, Transcript of ubiquitin specific peptidase 39, humanhuman

TSL 2

Gene USP39, Length 2,148 nt, Biotype processed transcript, Subcellular localisation Cytosol .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP39-210ENST00000459775 GOLGA6L2Q8N9W4 650 aaPredicted RBP13.11□□□□□ -0.31
USP39-210ENST00000459775 BRPF1P55201 1214 aaPredicted RBP13.1□□□□□ -0.31
USP39-210ENST00000459775 FKBP5Q13451 457 aaPredicted RBP13.1□□□□□ -0.31
USP39-210ENST00000459775 TICAM2Q86XR7 235 aa13.1□□□□□ -0.31
USP39-210ENST00000459775 DZIP1LQ8IYY4 767 aaKnown RBP13.1□□□□□ -0.31
USP39-210ENST00000459775 MTFR1LQ9H019 292 aa13.1□□□□□ -0.31
USP39-210ENST00000459775 DBF4Q9UBU7 674 aaPredicted RBP13.1□□□□□ -0.31
USP39-210ENST00000459775 KIF16BQ96L93 1317 aa13.1□□□□□ -0.31
USP39-210ENST00000459775 PTGER2P43116 358 aa13.1□□□□□ -0.31
USP39-210ENST00000459775 SLC4A10Q6U841 1118 aa13.1□□□□□ -0.31
USP39-210ENST00000459775 FTSJ3Q8IY81 847 aaKnown RBP13.1□□□□□ -0.31
USP39-210ENST00000459775 UBR2Q8IWV8 1755 aa13.1□□□□□ -0.31
USP39-210ENST00000459775 CYP19A1P11511 503 aaPredicted RBP13.09□□□□□ -0.31
USP39-210ENST00000459775 IFFO2Q5TF58 517 aa13.09□□□□□ -0.31
USP39-210ENST00000459775 LRP10Q7Z4F1 713 aa13.09□□□□□ -0.31
USP39-210ENST00000459775 DDX21Q9NR30 783 aaKnown RBP eCLIP13.09□□□□□ -0.31
USP39-210ENST00000459775 COPS6Q7L5N1 327 aa13.09□□□□□ -0.31
USP39-210ENST00000459775 XAGE3Q8WTP9 111 aa13.09□□□□□ -0.31
USP39-210ENST00000459775 IPO8O15397 1037 aaKnown RBP13.08□□□□□ -0.32
USP39-210ENST00000459775 GLIPR1L2Q4G1C9 344 aa13.08□□□□□ -0.32
USP39-210ENST00000459775 ITPRIPQ8IWB1 547 aa13.08□□□□□ -0.32
USP39-210ENST00000459775 ZBTB1Q9Y2K1 713 aa13.08□□□□□ -0.32
USP39-210ENST00000459775 SOS1Q07889 1333 aaPredicted RBP13.08□□□□□ -0.32
USP39-210ENST00000459775 PI4KAP2A4QPH2 592 aa13.07□□□□□ -0.32
USP39-210ENST00000459775 PDE3AQ14432 1141 aa13.07□□□□□ -0.32
USP39-210ENST00000459775 TTLL7Q6ZT98 887 aa13.07□□□□□ -0.32
USP39-210ENST00000459775 PI4KAP1Q8N8J0 262 aa13.07□□□□□ -0.32
USP39-210ENST00000459775 LINC00116Q8NCU8 138 aa13.07□□□□□ -0.32
USP39-210ENST00000459775 SLC15A2Q16348 729 aa13.07□□□□□ -0.32
USP39-210ENST00000459775 SMARCC1Q92922 1105 aaPredicted RBP13.07□□□□□ -0.32
USP39-210ENST00000459775 SYT17Q9BSW7 474 aa13.07□□□□□ -0.32
USP39-210ENST00000459775 LRRC4BQ9NT99 713 aa13.07□□□□□ -0.32
USP39-210ENST00000459775 NHSQ6T4R5 1651 aa13.07□□□□□ -0.32
USP39-210ENST00000459775 ZBTB7AO95365 584 aa13.06□□□□□ -0.32
USP39-210ENST00000459775 STARD3NLO95772 234 aa13.06□□□□□ -0.32
USP39-210ENST00000459775 B4GALNT3Q6L9W6 998 aa13.06□□□□□ -0.32
USP39-210ENST00000459775 INTS5Q6P9B9 1019 aaKnown RBP13.06□□□□□ -0.32
USP39-210ENST00000459775 ARHGAP45Q92619 1136 aa13.06□□□□□ -0.32
USP39-210ENST00000459775 FHDC1Q9C0D6 1143 aaPredicted RBP13.06□□□□□ -0.32
USP39-210ENST00000459775 BTAF1O14981 1849 aa13.06□□□□□ -0.32
USP39-210ENST00000459775 ADCY9O60503 1353 aa13.06□□□□□ -0.32
USP39-210ENST00000459775 CRKLP46109 303 aaKnown RBP13.06□□□□□ -0.32
USP39-210ENST00000459775 AMIGO3Q86WK7 504 aa13.06□□□□□ -0.32
USP39-210ENST00000459775 API5Q9BZZ5 524 aaKnown RBP13.06□□□□□ -0.32
USP39-210ENST00000459775 HYPKQ9NX55 129 aa13.06□□□□□ -0.32
USP39-210ENST00000459775 CCNL1Q9UK58 526 aaPredicted RBP13.06□□□□□ -0.32
USP39-210ENST00000459775 MAP3K2Q9Y2U5 619 aa13.06□□□□□ -0.32
USP39-210ENST00000459775 ABCC4O15439 1325 aa13.05□□□□□ -0.32
USP39-210ENST00000459775 MVPQ14764 893 aaKnown RBP13.05□□□□□ -0.32
USP39-210ENST00000459775 TXNRD1Q16881 649 aa13.05□□□□□ -0.32
USP39-210ENST00000459775 PROM2Q8N271 834 aa13.05□□□□□ -0.32
USP39-210ENST00000459775 PTPRCP08575 1304 aa13.05□□□□□ -0.32
USP39-210ENST00000459775 ZBTB3Q9H5J0 574 aa13.04□□□□□ -0.32
USP39-210ENST00000459775 GTF3C5Q9Y5Q8 519 aaPredicted RBP13.04□□□□□ -0.32
USP39-210ENST00000459775 SGIP1Q9BQI5 828 aa13.04□□□□□ -0.32
USP39-210ENST00000459775 TEX13AQ9BXU3 409 aaPredicted RBP13.04□□□□□ -0.32
USP39-210ENST00000459775 C1orf115Q9H7X2 142 aa13.04□□□□□ -0.32
USP39-210ENST00000459775 TJP1Q07157 1748 aa13.03□□□□□ -0.32
USP39-210ENST00000459775 QSER1Q2KHR3 1735 aa13.03□□□□□ -0.32
USP39-210ENST00000459775 TBC1D2BQ9UPU7 963 aa13.03□□□□□ -0.32
USP39-210ENST00000459775 ZBTB22O15209 634 aa13.03□□□□□ -0.32
USP39-210ENST00000459775 CWF19L2Q2TBE0 894 aaKnown RBP13.03□□□□□ -0.32
USP39-210ENST00000459775 RIC3Q7Z5B4 369 aa13.03□□□□□ -0.32
USP39-210ENST00000459775 ARID3AQ99856 593 aa13.03□□□□□ -0.32
USP39-210ENST00000459775 CCDC87Q9NVE4 849 aa13.03□□□□□ -0.32
USP39-210ENST00000459775 ATF5Q9Y2D1 282 aaPredicted RBP13.03□□□□□ -0.32
USP39-210ENST00000459775 ATP5J2-PTCD1G3V325 749 aa13.02□□□□□ -0.33
USP39-210ENST00000459775 KSR2Q6VAB6 950 aa13.02□□□□□ -0.33
USP39-210ENST00000459775 ANKRD13DQ6ZTN6 518 aa13.02□□□□□ -0.33
USP39-210ENST00000459775 DNAAF4Q8WXU2 420 aa13.02□□□□□ -0.33
USP39-210ENST00000459775 JARID2Q92833 1246 aaPredicted RBP13.02□□□□□ -0.33
USP39-210ENST00000459775 ZBTB7BO15156 539 aaPredicted RBP13.01□□□□□ -0.33
USP39-210ENST00000459775 INTS3Q68E01 1043 aaKnown RBP13.01□□□□□ -0.33
USP39-210ENST00000459775 MEIS3Q99687 375 aa13.01□□□□□ -0.33
USP39-210ENST00000459775 SLC16A10Q8TF71 515 aa13.01□□□□□ -0.33
USP39-210ENST00000459775 MYD88Q99836 296 aa13.01□□□□□ -0.33
USP39-210ENST00000459775 PCDHB15Q9Y5E8 787 aa13.01□□□□□ -0.33
USP39-210ENST00000459775 LAMB4A4D0S4 1761 aa13.01□□□□□ -0.33
USP39-210ENST00000459775 COL24A1Q17RW2 1714 aa13□□□□□ -0.33
USP39-210ENST00000459775 HLFQ16534 295 aa13□□□□□ -0.33
USP39-210ENST00000459775 BEND3Q5T5X7 828 aa13□□□□□ -0.33
USP39-210ENST00000459775 CLSTN1O94985 981 aa13□□□□□ -0.33
USP39-210ENST00000459775 IGKV5-2P06315 115 aa13□□□□□ -0.33
USP39-210ENST00000459775 ERBB4Q15303 1308 aa12.99□□□□□ -0.33
USP39-210ENST00000459775 GNPATO15228 680 aa12.99□□□□□ -0.33
USP39-210ENST00000459775 PHF14O94880 888 aa12.99□□□□□ -0.33
USP39-210ENST00000459775 MS4A1P11836 297 aa12.99□□□□□ -0.33
USP39-210ENST00000459775 EIF5P55010 431 aaKnown RBP12.99□□□□□ -0.33
USP39-210ENST00000459775 PDGFDQ9GZP0 370 aaPredicted RBP12.99□□□□□ -0.33
USP39-210ENST00000459775 ZBTB40Q9NUA8 1239 aa12.99□□□□□ -0.33
USP39-210ENST00000459775 PPP4R2Q9NY27 417 aa12.99□□□□□ -0.33
USP39-210ENST00000459775 DDX58O95786 925 aaKnown RBP12.98□□□□□ -0.33
USP39-210ENST00000459775 RTL5Q5HYW3 569 aaPredicted RBP12.98□□□□□ -0.33
USP39-210ENST00000459775 DDX19BQ9UMR2 479 aa12.98□□□□□ -0.33
USP39-210ENST00000459775 MYH14Q7Z406 1995 aaKnown RBP12.98□□□□□ -0.33
USP39-210ENST00000459775 POLD1P28340 1107 aa12.98□□□□□ -0.33
USP39-210ENST00000459775 GPR162Q16538 588 aa12.98□□□□□ -0.33
USP39-210ENST00000459775 DZIP3Q86Y13 1208 aaKnown RBP12.98□□□□□ -0.33
USP39-210ENST00000459775 PLBD2Q8NHP8 589 aa12.98□□□□□ -0.33
USP39-210ENST00000459775 SRCIN1Q9C0H9 1055 aa12.98□□□□□ -0.33
Retrieved 100 of 20,778 RNA–protein pairs in 34.9 ms