RNA–Protein interactions for RNA: ENST00000458516.5

TRIM39-211, Transcript of tripartite motif containing 39, humanhuman

TSL 2

Gene TRIM39, Length 1,003 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM39-211ENST00000458516 RFC4P35249 363 aa21.52■■□□□ 1.04
TRIM39-211ENST00000458516 R3HDM1Q15032 1099 aaKnown RBP21.52■■□□□ 1.04
TRIM39-211ENST00000458516 KIF6Q6ZMV9 814 aa21.52■■□□□ 1.04
TRIM39-211ENST00000458516 SRP68Q9UHB9 627 aaKnown RBP21.52■■□□□ 1.04
TRIM39-211ENST00000458516 NARFQ9UHQ1 456 aa21.52■■□□□ 1.04
TRIM39-211ENST00000458516 KIF16BQ96L93 1317 aa21.52■■□□□ 1.03
TRIM39-211ENST00000458516 ADCY9O60503 1353 aa21.51■■□□□ 1.03
TRIM39-211ENST00000458516 COL24A1Q17RW2 1714 aa21.51■■□□□ 1.03
TRIM39-211ENST00000458516 FKBP5Q13451 457 aaPredicted RBP21.5■■□□□ 1.03
TRIM39-211ENST00000458516 USPL1Q5W0Q7 1092 aa21.5■■□□□ 1.03
TRIM39-211ENST00000458516 PLBD2Q8NHP8 589 aa21.5■■□□□ 1.03
TRIM39-211ENST00000458516 ARXQ96QS3 562 aa21.5■■□□□ 1.03
TRIM39-211ENST00000458516 PDGFDQ9GZP0 370 aaPredicted RBP21.5■■□□□ 1.03
TRIM39-211ENST00000458516 ZBTB3Q9H5J0 574 aa21.5■■□□□ 1.03
TRIM39-211ENST00000458516 BCL2L12Q9HB09 334 aa21.5■■□□□ 1.03
TRIM39-211ENST00000458516 NOB1Q9ULX3 412 aaKnown RBP21.5■■□□□ 1.03
TRIM39-211ENST00000458516 PTPRCP08575 1304 aa21.5■■□□□ 1.03
TRIM39-211ENST00000458516 AFDNP55196 1824 aaKnown RBP21.5■■□□□ 1.03
TRIM39-211ENST00000458516 ERVV-1B6SEH8 477 aa21.49■■□□□ 1.03
TRIM39-211ENST00000458516 ZPR1O75312 459 aa21.49■■□□□ 1.03
TRIM39-211ENST00000458516 ANKRD13DQ6ZTN6 518 aa21.49■■□□□ 1.03
TRIM39-211ENST00000458516 PSDA5PKW4 1024 aaPredicted RBP21.48■■□□□ 1.03
TRIM39-211ENST00000458516 MSH5O43196 834 aa21.48■■□□□ 1.03
TRIM39-211ENST00000458516 DDX58O95786 925 aaKnown RBP21.48■■□□□ 1.03
TRIM39-211ENST00000458516 HLFQ16534 295 aa21.48■■□□□ 1.03
TRIM39-211ENST00000458516 KSR2Q6VAB6 950 aa21.48■■□□□ 1.03
TRIM39-211ENST00000458516 PI4KAP2A4QPH2 592 aa21.47■■□□□ 1.03
TRIM39-211ENST00000458516 RGL2O15211 777 aa21.47■■□□□ 1.03
TRIM39-211ENST00000458516 GYS1P13807 737 aa21.47■■□□□ 1.03
TRIM39-211ENST00000458516 GIGYF2Q6Y7W6 1299 aaKnown RBP21.47■■□□□ 1.03
TRIM39-211ENST00000458516 PI4KAP1Q8N8J0 262 aa21.47■■□□□ 1.03
TRIM39-211ENST00000458516 RIC3Q7Z5B4 369 aa21.46■■□□□ 1.03
TRIM39-211ENST00000458516 ARHGAP45Q92619 1136 aa21.46■■□□□ 1.03
TRIM39-211ENST00000458516 FRAT1Q92837 279 aaPredicted RBP21.46■■□□□ 1.03
TRIM39-211ENST00000458516 MAP3K2Q9Y2U5 619 aa21.46■■□□□ 1.03
TRIM39-211ENST00000458516 ATP10DQ9P241 1426 aa21.46■■□□□ 1.03
TRIM39-211ENST00000458516 PXDNLA1KZ92 1463 aa21.45■■□□□ 1.03
TRIM39-211ENST00000458516 F6X3S4 739 aa21.45■■□□□ 1.02
TRIM39-211ENST00000458516 CLEC4GQ6UXB4 293 aa21.45■■□□□ 1.02
TRIM39-211ENST00000458516 FKBP8Q14318 412 aa21.44■■□□□ 1.02
TRIM39-211ENST00000458516 ZKSCAN2Q63HK3 967 aa21.44■■□□□ 1.02
TRIM39-211ENST00000458516 DNAAF4Q8WXU2 420 aa21.44■■□□□ 1.02
TRIM39-211ENST00000458516 API5Q9BZZ5 524 aaKnown RBP21.44■■□□□ 1.02
TRIM39-211ENST00000458516 TNNQ9UQP3 1299 aa21.44■■□□□ 1.02
TRIM39-211ENST00000458516 ZNF652Q9Y2D9 606 aa21.44■■□□□ 1.02
TRIM39-211ENST00000458516 IPO8O15397 1037 aaKnown RBP21.43■■□□□ 1.02
TRIM39-211ENST00000458516 TRIM27P14373 513 aa21.43■■□□□ 1.02
TRIM39-211ENST00000458516 ATF7IPQ6VMQ6 1270 aa21.43■■□□□ 1.02
TRIM39-211ENST00000458516 METTL22Q9BUU2 404 aaPredicted RBP21.43■■□□□ 1.02
TRIM39-211ENST00000458516 ABCC4O15439 1325 aa21.42■■□□□ 1.02
TRIM39-211ENST00000458516 TCIRG1Q13488 830 aa21.42■■□□□ 1.02
TRIM39-211ENST00000458516 SLC16A10Q8TF71 515 aa21.42■■□□□ 1.02
TRIM39-211ENST00000458516 PLIN1O60240 522 aa21.41■■□□□ 1.02
TRIM39-211ENST00000458516 CENPBP07199 599 aaPredicted RBP21.41■■□□□ 1.02
TRIM39-211ENST00000458516 HSP90AB3PQ58FF7 597 aa21.41■■□□□ 1.02
TRIM39-211ENST00000458516 TBC1D9BQ66K14 1250 aa21.41■■□□□ 1.02
TRIM39-211ENST00000458516 MSL1Q68DK7 614 aa21.41■■□□□ 1.02
TRIM39-211ENST00000458516 MYD88Q99836 296 aa21.41■■□□□ 1.02
TRIM39-211ENST00000458516 NRXN2Q9P2S2 1712 aa21.41■■□□□ 1.02
TRIM39-211ENST00000458516 ZNF34Q8IZ26 560 aa21.4■■□□□ 1.02
TRIM39-211ENST00000458516 ISCA1Q9BUE6 129 aa21.4■■□□□ 1.02
TRIM39-211ENST00000458516 RNF123Q5XPI4 1314 aa21.39■■□□□ 1.01
TRIM39-211ENST00000458516 UBN2Q6ZU65 1347 aa21.39■■□□□ 1.01
TRIM39-211ENST00000458516 RRP1P56182 461 aaKnown RBP21.39■■□□□ 1.01
TRIM39-211ENST00000458516 NFIXQ14938 502 aa21.39■■□□□ 1.01
TRIM39-211ENST00000458516 NLGN1Q8N2Q7 840 aa21.39■■□□□ 1.01
TRIM39-211ENST00000458516 ATP5J2-PTCD1G3V325 749 aa21.38■■□□□ 1.01
TRIM39-211ENST00000458516 ZBTB7AO95365 584 aa21.38■■□□□ 1.01
TRIM39-211ENST00000458516 IGKV5-2P06315 115 aa21.38■■□□□ 1.01
TRIM39-211ENST00000458516 GPTP24298 496 aa21.38■■□□□ 1.01
TRIM39-211ENST00000458516 TM4SF1P30408 202 aa21.38■■□□□ 1.01
TRIM39-211ENST00000458516 BEND3Q5T5X7 828 aa21.38■■□□□ 1.01
TRIM39-211ENST00000458516 SLC4A10Q6U841 1118 aa21.38■■□□□ 1.01
TRIM39-211ENST00000458516 GOLGA6L2Q8N9W4 650 aaPredicted RBP21.38■■□□□ 1.01
TRIM39-211ENST00000458516 NIP7Q9Y221 180 aaKnown RBP eCLIP21.38■■□□□ 1.01
TRIM39-211ENST00000458516 RLBP1P12271 317 aa21.37■■□□□ 1.01
TRIM39-211ENST00000458516 NEXNQ0ZGT2 675 aa21.37■■□□□ 1.01
TRIM39-211ENST00000458516 BICDL1Q6ZP65 573 aa21.37■■□□□ 1.01
TRIM39-211ENST00000458516 CLUAP1Q96AJ1 413 aa21.37■■□□□ 1.01
TRIM39-211ENST00000458516 MTFR1LQ9H019 292 aa21.37■■□□□ 1.01
TRIM39-211ENST00000458516 DDR1Q08345 913 aa21.36■■□□□ 1.01
TRIM39-211ENST00000458516 TRIM28Q13263 835 aaKnown RBP21.36■■□□□ 1.01
TRIM39-211ENST00000458516 CWF19L2Q2TBE0 894 aaKnown RBP21.36■■□□□ 1.01
TRIM39-211ENST00000458516 LINS1Q8NG48 757 aa21.36■■□□□ 1.01
TRIM39-211ENST00000458516 SUPT16HQ9Y5B9 1047 aaKnown RBP21.36■■□□□ 1.01
TRIM39-211ENST00000458516 LAMB2P55268 1798 aa21.36■■□□□ 1.01
TRIM39-211ENST00000458516 CARMIL3Q8ND23 1372 aa21.36■■□□□ 1.01
TRIM39-211ENST00000458516 NEURL1BA8MQ27 555 aa21.35■■□□□ 1.01
TRIM39-211ENST00000458516 NLRP10Q86W26 655 aa21.35■■□□□ 1.01
TRIM39-211ENST00000458516 DZIP1LQ8IYY4 767 aaKnown RBP21.35■■□□□ 1.01
TRIM39-211ENST00000458516 SETDB2Q96T68 719 aa21.35■■□□□ 1.01
TRIM39-211ENST00000458516 IBTKQ9P2D0 1353 aaPredicted RBP21.35■■□□□ 1.01
TRIM39-211ENST00000458516 POLRMTO00411 1230 aaKnown RBP21.34■■□□□ 1.01
TRIM39-211ENST00000458516 MMP10P09238 476 aa21.34■■□□□ 1.01
TRIM39-211ENST00000458516 PARP10Q53GL7 1025 aa21.34■■□□□ 1.01
TRIM39-211ENST00000458516 FTSJ3Q8IY81 847 aaKnown RBP21.34■■□□□ 1.01
TRIM39-211ENST00000458516 SRCIN1Q9C0H9 1055 aa21.34■■□□□ 1.01
TRIM39-211ENST00000458516 DDX60Q8IY21 1712 aaKnown RBP21.33■■□□□ 1.01
TRIM39-211ENST00000458516 ALDH1L1O75891 902 aa21.33■■□□□ 1.01
TRIM39-211ENST00000458516 CCT4P50991 539 aaKnown RBP21.33■■□□□ 1.01
Retrieved 100 of 20,778 RNA–protein pairs in 43.8 ms