RNA–Protein interactions for RNA: ENST00000454240.1

SMARCC1-203, Transcript of SWI/SNF related, matrix associated, actin dependent regulator of chromatin subfamily c member 1, humanhuman

TSL 3

Gene SMARCC1, Length 636 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMARCC1-203ENST00000454240 HNRNPUQ00839 825 aaKnown RBP eCLIP36.11■■■■□ 3.37
SMARCC1-203ENST00000454240 DDR1Q08345 913 aa36.11■■■■□ 3.37
SMARCC1-203ENST00000454240 CCDC30Q5VVM6 783 aa36.11■■■■□ 3.37
SMARCC1-203ENST00000454240 CDCA7LQ96GN5 454 aa36.11■■■■□ 3.37
SMARCC1-203ENST00000454240 FHDC1Q9C0D6 1143 aaPredicted RBP36.11■■■■□ 3.37
SMARCC1-203ENST00000454240 PARP3Q9Y6F1 533 aa36.11■■■■□ 3.37
SMARCC1-203ENST00000454240 MAP3K15Q6ZN16 1313 aa36.1■■■■□ 3.37
SMARCC1-203ENST00000454240 VAMP4O75379 141 aa36.1■■■■□ 3.37
SMARCC1-203ENST00000454240 TBC1D9BQ66K14 1250 aa36.1■■■■□ 3.37
SMARCC1-203ENST00000454240 KIF6Q6ZMV9 814 aa36.1■■■■□ 3.37
SMARCC1-203ENST00000454240 AFDNP55196 1824 aaKnown RBP36.09■■■■□ 3.37
SMARCC1-203ENST00000454240 POLRMTO00411 1230 aaKnown RBP36.09■■■■□ 3.37
SMARCC1-203ENST00000454240 COPS6Q7L5N1 327 aa36.09■■■■□ 3.37
SMARCC1-203ENST00000454240 HYPKQ9NX55 129 aa36.09■■■■□ 3.37
SMARCC1-203ENST00000454240 ZNF652Q9Y2D9 606 aa36.09■■■■□ 3.37
SMARCC1-203ENST00000454240 HLFQ16534 295 aa36.08■■■■□ 3.37
SMARCC1-203ENST00000454240 TRMT2AQ8IZ69 625 aaKnown RBP36.08■■■■□ 3.37
SMARCC1-203ENST00000454240 XAGE3Q8WTP9 111 aa36.08■■■■□ 3.37
SMARCC1-203ENST00000454240 CACNA1FO60840 1977 aa36.07■■■■□ 3.36
SMARCC1-203ENST00000454240 NRXN2Q9P2S2 1712 aa36.06■■■■□ 3.36
SMARCC1-203ENST00000454240 SYT17Q9BSW7 474 aa36.06■■■■□ 3.36
SMARCC1-203ENST00000454240 KIF13BQ9NQT8 1826 aa36.06■■■■□ 3.36
SMARCC1-203ENST00000454240 BICDL1Q6ZP65 573 aa36.05■■■■□ 3.36
SMARCC1-203ENST00000454240 AIMP1Q12904 312 aaKnown RBP36.04■■■■□ 3.36
SMARCC1-203ENST00000454240 ZBTB3Q9H5J0 574 aa36.04■■■■□ 3.36
SMARCC1-203ENST00000454240 CD2APQ9Y5K6 639 aa36.03■■■■□ 3.36
SMARCC1-203ENST00000454240 SETDB2Q96T68 719 aa36.02■■■■□ 3.36
SMARCC1-203ENST00000454240 SERPINB2P05120 415 aa36.01■■■■□ 3.36
SMARCC1-203ENST00000454240 GIGYF2Q6Y7W6 1299 aaKnown RBP36.01■■■■□ 3.36
SMARCC1-203ENST00000454240 KLHL34Q8N239 644 aa36.01■■■■□ 3.36
SMARCC1-203ENST00000454240 STK31Q9BXU1 1019 aa36■■■■□ 3.35
SMARCC1-203ENST00000454240 PHAXQ9H814 394 aaKnown RBP36■■■■□ 3.35
SMARCC1-203ENST00000454240 CARMIL3Q8ND23 1372 aa36■■■■□ 3.35
SMARCC1-203ENST00000454240 TCERG1O14776 1098 aaKnown RBP35.99■■■■□ 3.35
SMARCC1-203ENST00000454240 C10orf71Q711Q0 1435 aa35.99■■■■□ 3.35
SMARCC1-203ENST00000454240 NIP7Q9Y221 180 aaKnown RBP eCLIP35.98■■■■□ 3.35
SMARCC1-203ENST00000454240 ATP10DQ9P241 1426 aa35.98■■■■□ 3.35
SMARCC1-203ENST00000454240 ANKRD13DQ6ZTN6 518 aa35.97■■■■□ 3.35
SMARCC1-203ENST00000454240 PLBD2Q8NHP8 589 aa35.97■■■■□ 3.35
SMARCC1-203ENST00000454240 ANKRD36CQ5JPF3 1778 aa35.97■■■■□ 3.35
SMARCC1-203ENST00000454240 ZBED9Q6R2W3 1325 aa35.95■■■■□ 3.35
SMARCC1-203ENST00000454240 SLC4A2P04920 1241 aa35.95■■■■□ 3.35
SMARCC1-203ENST00000454240 ARFGEF2Q9Y6D5 1785 aa35.94■■■■□ 3.34
SMARCC1-203ENST00000454240 ZNF34Q8IZ26 560 aa35.94■■■■□ 3.34
SMARCC1-203ENST00000454240 NLGN2Q8NFZ4 835 aa35.94■■■■□ 3.34
SMARCC1-203ENST00000454240 KIAA1551Q9HCM1 1747 aa35.92■■■■□ 3.34
SMARCC1-203ENST00000454240 TCIRG1Q13488 830 aa35.9■■■■□ 3.34
SMARCC1-203ENST00000454240 HSP90AB3PQ58FF7 597 aa35.9■■■■□ 3.34
SMARCC1-203ENST00000454240 PRR5LQ6MZQ0 368 aa35.9■■■■□ 3.34
SMARCC1-203ENST00000454240 G2E3Q7L622 706 aa35.9■■■■□ 3.34
SMARCC1-203ENST00000454240 UBN2Q6ZU65 1347 aa35.89■■■■□ 3.34
SMARCC1-203ENST00000454240 GPTP24298 496 aa35.89■■■■□ 3.34
SMARCC1-203ENST00000454240 TGFB2P61812 414 aa35.88■■■■□ 3.33
SMARCC1-203ENST00000454240 NBPF5PQ86XG9 351 aaPredicted RBP35.88■■■■□ 3.33
SMARCC1-203ENST00000454240 N4BP2Q86UW6 1770 aaPredicted RBP35.88■■■■□ 3.33
SMARCC1-203ENST00000454240 ANKRD31Q8N7Z5 1873 aa35.88■■■■□ 3.33
SMARCC1-203ENST00000454240 DDX58O95786 925 aaKnown RBP35.87■■■■□ 3.33
SMARCC1-203ENST00000454240 RIC3Q7Z5B4 369 aa35.87■■■■□ 3.33
SMARCC1-203ENST00000454240 CNBD1Q8NA66 436 aa35.87■■■■□ 3.33
SMARCC1-203ENST00000454240 ZNF428Q96B54 188 aa35.87■■■■□ 3.33
SMARCC1-203ENST00000454240 TPTE2Q6XPS3 522 aa35.86■■■■□ 3.33
SMARCC1-203ENST00000454240 CT47B1P0C2W7 299 aaPredicted RBP35.85■■■■□ 3.33
SMARCC1-203ENST00000454240 PARP10Q53GL7 1025 aa35.85■■■■□ 3.33
SMARCC1-203ENST00000454240 PXDNLA1KZ92 1463 aa35.85■■■■□ 3.33
SMARCC1-203ENST00000454240 FLIIQ13045 1269 aa35.84■■■■□ 3.33
SMARCC1-203ENST00000454240 SUSD4Q5VX71 490 aa35.84■■■■□ 3.33
SMARCC1-203ENST00000454240 KSR2Q6VAB6 950 aa35.84■■■■□ 3.33
SMARCC1-203ENST00000454240 FAM177BA6PVY3 158 aa35.83■■■■□ 3.33
SMARCC1-203ENST00000454240 NYXQ9GZU5 481 aa35.83■■■■□ 3.33
SMARCC1-203ENST00000454240 IBTKQ9P2D0 1353 aaPredicted RBP35.83■■■■□ 3.33
SMARCC1-203ENST00000454240 CCDC24Q8N4L8 307 aa35.82■■■■□ 3.32
SMARCC1-203ENST00000454240 ISCA1Q9BUE6 129 aa35.82■■■■□ 3.32
SMARCC1-203ENST00000454240 BRIP1Q9BX63 1249 aa35.82■■■■□ 3.32
SMARCC1-203ENST00000454240 ADCY9O60503 1353 aa35.81■■■■□ 3.32
SMARCC1-203ENST00000454240 PI4KAP2A4QPH2 592 aa35.81■■■■□ 3.32
SMARCC1-203ENST00000454240 NPHP1O15259 732 aa35.81■■■■□ 3.32
SMARCC1-203ENST00000454240 ST5P78524 1137 aa35.81■■■■□ 3.32
SMARCC1-203ENST00000454240 NLRP10Q86W26 655 aa35.81■■■■□ 3.32
SMARCC1-203ENST00000454240 PI4KAP1Q8N8J0 262 aa35.81■■■■□ 3.32
SMARCC1-203ENST00000454240 BRCA1P38398 1863 aaKnown RBP35.8■■■■□ 3.32
SMARCC1-203ENST00000454240 PPP1R42Q7Z4L9 355 aa35.8■■■■□ 3.32
SMARCC1-203ENST00000454240 MAP3K2Q9Y2U5 619 aa35.8■■■■□ 3.32
SMARCC1-203ENST00000454240 A0A0G2JLW4 131 aa35.79■■■■□ 3.32
SMARCC1-203ENST00000454240 NTSR2O95665 410 aa35.79■■■■□ 3.32
SMARCC1-203ENST00000454240 TRIM28Q13263 835 aaKnown RBP35.79■■■■□ 3.32
SMARCC1-203ENST00000454240 METTL22Q9BUU2 404 aaPredicted RBP35.79■■■■□ 3.32
SMARCC1-203ENST00000454240 DPEP1P16444 411 aa35.78■■■■□ 3.32
SMARCC1-203ENST00000454240 ALDH1L2Q3SY69 923 aa35.78■■■■□ 3.32
SMARCC1-203ENST00000454240 MRPL50Q8N5N7 158 aaKnown RBP35.78■■■■□ 3.32
SMARCC1-203ENST00000454240 SSH1Q8WYL5 1049 aa35.78■■■■□ 3.32
SMARCC1-203ENST00000454240 ATP5J2-PTCD1G3V325 749 aa35.77■■■■□ 3.32
SMARCC1-203ENST00000454240 KCNA3P22001 575 aa35.77■■■■□ 3.32
SMARCC1-203ENST00000454240 FKBP5Q13451 457 aaPredicted RBP35.77■■■■□ 3.32
SMARCC1-203ENST00000454240 DLEC1Q9Y238 1755 aa35.76■■■■□ 3.32
SMARCC1-203ENST00000454240 GTF2E1P29083 439 aaPredicted RBP35.76■■■■□ 3.32
SMARCC1-203ENST00000454240 PDE6BP35913 854 aa35.76■■■■□ 3.32
SMARCC1-203ENST00000454240 NUTM1Q86Y26 1132 aa35.76■■■■□ 3.32
SMARCC1-203ENST00000454240 MYD88Q99836 296 aa35.76■■■■□ 3.32
SMARCC1-203ENST00000454240 UTP14AQ9BVJ6 771 aaKnown RBP35.76■■■■□ 3.32
SMARCC1-203ENST00000454240 CHRNA5P30532 468 aa35.74■■■■□ 3.31
Retrieved 100 of 20,778 RNA–protein pairs in 24.3 ms