RNA–Protein interactions for RNA: ENST00000447578.6

VPS29-202, Transcript of VPS29, retromer complex component, humanhuman

TSL 1 (best) BASIC

Gene VPS29, Length 996 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS29-202ENST00000447578 EPHA4P54764 986 aa8.32□□□□□ -1.08
VPS29-202ENST00000447578 DOC2BQ14184 412 aa8.32□□□□□ -1.08
VPS29-202ENST00000447578 ARTNQ5T4W7 220 aa8.32□□□□□ -1.08
VPS29-202ENST00000447578 SH3PXD2AQ5TCZ1 1133 aa8.32□□□□□ -1.08
VPS29-202ENST00000447578 LRRC69Q6ZNQ3 347 aa8.32□□□□□ -1.08
VPS29-202ENST00000447578 SLC9A9Q8IVB4 645 aa8.32□□□□□ -1.08
VPS29-202ENST00000447578 PRR12Q9ULL5 1215 aa8.32□□□□□ -1.08
VPS29-202ENST00000447578 KIAA1024Q9UPX6 916 aa8.32□□□□□ -1.08
VPS29-202ENST00000447578 ZBTB7BO15156 539 aaPredicted RBP8.31□□□□□ -1.08
VPS29-202ENST00000447578 EFSO43281 561 aa8.31□□□□□ -1.08
VPS29-202ENST00000447578 TEAD4Q15561 434 aa8.31□□□□□ -1.08
VPS29-202ENST00000447578 WWC1Q8IX03 1113 aa8.31□□□□□ -1.08
VPS29-202ENST00000447578 MARK1Q9P0L2 795 aa8.31□□□□□ -1.08
VPS29-202ENST00000447578 ZNF232Q9UNY5 417 aa8.31□□□□□ -1.08
VPS29-202ENST00000447578 PIK3R2O00459 728 aa8.3□□□□□ -1.08
VPS29-202ENST00000447578 RAD21O60216 631 aa8.3□□□□□ -1.08
VPS29-202ENST00000447578 SAMD5Q5TGI4 173 aa8.3□□□□□ -1.08
VPS29-202ENST00000447578 TPCN2Q8NHX9 752 aa8.3□□□□□ -1.08
VPS29-202ENST00000447578 C7orf43Q8WVR3 580 aa8.3□□□□□ -1.08
VPS29-202ENST00000447578 EML1O00423 815 aa8.29□□□□□ -1.08
VPS29-202ENST00000447578 CLDN10P78369 228 aa8.29□□□□□ -1.08
VPS29-202ENST00000447578 FOXD4L6Q3SYB3 417 aaPredicted RBP8.29□□□□□ -1.08
VPS29-202ENST00000447578 HDGFL1Q5TGJ6 251 aa8.29□□□□□ -1.08
VPS29-202ENST00000447578 ZNF468Q5VIY5 522 aaPredicted RBP8.29□□□□□ -1.08
VPS29-202ENST00000447578 FOXD4L3Q6VB84 417 aaPredicted RBP8.29□□□□□ -1.08
VPS29-202ENST00000447578 UCN2Q96RP3 112 aa8.29□□□□□ -1.08
VPS29-202ENST00000447578 AVENQ9NQS1 362 aaPredicted RBP8.29□□□□□ -1.08
VPS29-202ENST00000447578 UBTFP17480 764 aaKnown RBP8.28□□□□□ -1.08
VPS29-202ENST00000447578 CHRNA4P43681 627 aa8.28□□□□□ -1.08
VPS29-202ENST00000447578 CCDC102BQ68D86 513 aa8.28□□□□□ -1.08
VPS29-202ENST00000447578 SERTM1A2A2V5 107 aa8.27□□□□□ -1.09
VPS29-202ENST00000447578 USP17L3A6NCW0 530 aa8.27□□□□□ -1.09
VPS29-202ENST00000447578 USP17L4A6NCW7 530 aa8.27□□□□□ -1.09
VPS29-202ENST00000447578 COBLO75128 1261 aa8.27□□□□□ -1.09
VPS29-202ENST00000447578 SFSWAPQ12872 951 aaKnown RBP8.27□□□□□ -1.09
VPS29-202ENST00000447578 USP17L2Q6R6M4 530 aa8.27□□□□□ -1.09
VPS29-202ENST00000447578 USP17L1Q7RTZ2 530 aa8.27□□□□□ -1.09
VPS29-202ENST00000447578 TRIM11Q96F44 468 aa8.27□□□□□ -1.09
VPS29-202ENST00000447578 SYT9Q86SS6 491 aa8.26□□□□□ -1.09
VPS29-202ENST00000447578 TRIM50Q86XT4 487 aa8.26□□□□□ -1.09
VPS29-202ENST00000447578 TSPAN10Q9H1Z9 355 aaPredicted RBP8.26□□□□□ -1.09
VPS29-202ENST00000447578 NEUROD4Q9HD90 331 aa8.26□□□□□ -1.09
VPS29-202ENST00000447578 HCN4Q9Y3Q4 1203 aa8.26□□□□□ -1.09
VPS29-202ENST00000447578 LAMC2Q13753 1193 aa8.25□□□□□ -1.09
VPS29-202ENST00000447578 PLEKHM2Q8IWE5 1019 aa8.25□□□□□ -1.09
VPS29-202ENST00000447578 OGFOD1Q8N543 542 aa8.25□□□□□ -1.09
VPS29-202ENST00000447578 SLC30A3Q99726 388 aa8.25□□□□□ -1.09
VPS29-202ENST00000447578 PLVAPQ9BX97 442 aa8.25□□□□□ -1.09
VPS29-202ENST00000447578 NOP53Q9NZM5 478 aaKnown RBP8.25□□□□□ -1.09
VPS29-202ENST00000447578 FLIIQ13045 1269 aa8.24□□□□□ -1.09
VPS29-202ENST00000447578 RHPN1Q8TCX5 695 aa8.24□□□□□ -1.09
VPS29-202ENST00000447578 HSH2DQ96JZ2 352 aa8.24□□□□□ -1.09
VPS29-202ENST00000447578 MKRN1Q9UHC7 482 aaKnown RBP8.24□□□□□ -1.09
VPS29-202ENST00000447578 ELOA3CA0A087WX78 387 aaPredicted RBP8.23□□□□□ -1.09
VPS29-202ENST00000447578 ELOA3DA6NLF2 546 aaPredicted RBP8.23□□□□□ -1.09
VPS29-202ENST00000447578 SFI1A8K8P3 1242 aa8.23□□□□□ -1.09
VPS29-202ENST00000447578 ATP9BO43861 1147 aa8.23□□□□□ -1.09
VPS29-202ENST00000447578 ATP1A2P50993 1020 aa8.23□□□□□ -1.09
VPS29-202ENST00000447578 ELOA3BQ3SY89 546 aa8.23□□□□□ -1.09
VPS29-202ENST00000447578 RAB44Q7Z6P3 723 aaPredicted RBP8.23□□□□□ -1.09
VPS29-202ENST00000447578 TSEN2Q8NCE0 465 aaKnown RBP8.23□□□□□ -1.09
VPS29-202ENST00000447578 ELOA3Q8NG57 546 aa8.23□□□□□ -1.09
VPS29-202ENST00000447578 ZNF594Q96JF6 807 aaPredicted RBP8.23□□□□□ -1.09
VPS29-202ENST00000447578 MDFIQ99750 246 aa8.23□□□□□ -1.09
VPS29-202ENST00000447578 PSMA6P60900 246 aaKnown RBP8.22□□□□□ -1.09
VPS29-202ENST00000447578 ZNF280CQ8ND82 737 aa8.22□□□□□ -1.09
VPS29-202ENST00000447578 PHACTR1Q9C0D0 580 aa8.22□□□□□ -1.09
VPS29-202ENST00000447578 GTF3C3Q9Y5Q9 886 aa8.22□□□□□ -1.09
VPS29-202ENST00000447578 ALAS2P22557 587 aa8.21□□□□□ -1.1
VPS29-202ENST00000447578 GATA4P43694 442 aa8.21□□□□□ -1.1
VPS29-202ENST00000447578 LARGE2Q8N3Y3 721 aa8.21□□□□□ -1.1
VPS29-202ENST00000447578 CEP63Q96MT8 703 aa8.21□□□□□ -1.1
VPS29-202ENST00000447578 PALM3A6NDB9 673 aaPredicted RBP8.2□□□□□ -1.1
VPS29-202ENST00000447578 C21orf2O43822 256 aa8.2□□□□□ -1.1
VPS29-202ENST00000447578 SIN3BO75182 1162 aa8.2□□□□□ -1.1
VPS29-202ENST00000447578 DKK1O94907 266 aa8.2□□□□□ -1.1
VPS29-202ENST00000447578 C8orf86Q6ZUL3 223 aa8.2□□□□□ -1.1
VPS29-202ENST00000447578 CLUAP1Q96AJ1 413 aa8.2□□□□□ -1.1
VPS29-202ENST00000447578 GPC6Q9Y625 555 aaPredicted RBP8.2□□□□□ -1.1
VPS29-202ENST00000447578 SPEM2Q0P670 501 aa8.19□□□□□ -1.1
VPS29-202ENST00000447578 RSPO4Q2I0M5 234 aaPredicted RBP8.19□□□□□ -1.1
VPS29-202ENST00000447578 C1orf53Q5VUE5 145 aa8.19□□□□□ -1.1
VPS29-202ENST00000447578 SIX5Q8N196 739 aa8.19□□□□□ -1.1
VPS29-202ENST00000447578 SUSD3Q96L08 255 aa8.19□□□□□ -1.1
VPS29-202ENST00000447578 BRD7Q9NPI1 651 aa8.19□□□□□ -1.1
VPS29-202ENST00000447578 STARD13Q9Y3M8 1113 aa8.19□□□□□ -1.1
VPS29-202ENST00000447578 ADARB2-AS1A8MUL3 147 aa8.18□□□□□ -1.1
VPS29-202ENST00000447578 M0R082 166 aa8.18□□□□□ -1.1
VPS29-202ENST00000447578 PPP1R12BO60237 982 aaPredicted RBP8.18□□□□□ -1.1
VPS29-202ENST00000447578 HIRAP54198 1017 aaPredicted RBP8.18□□□□□ -1.1
VPS29-202ENST00000447578 POTEAQ6S8J7 498 aa8.18□□□□□ -1.1
VPS29-202ENST00000447578 ZNF417Q8TAU3 575 aa8.18□□□□□ -1.1
VPS29-202ENST00000447578 ZNF587Q96SQ5 575 aaPredicted RBP8.18□□□□□ -1.1
VPS29-202ENST00000447578 TFIP11Q9UBB9 837 aaKnown RBP8.18□□□□□ -1.1
VPS29-202ENST00000447578 CHMP3Q9Y3E7 222 aa8.18□□□□□ -1.1
VPS29-202ENST00000447578 FAM229AH3BQW9 127 aa8.17□□□□□ -1.1
VPS29-202ENST00000447578 M0R2N6 131 aa8.17□□□□□ -1.1
VPS29-202ENST00000447578 LGR5O75473 907 aa8.17□□□□□ -1.1
VPS29-202ENST00000447578 ALBP02768 609 aa8.17□□□□□ -1.1
VPS29-202ENST00000447578 COL9A3Q14050 684 aaPredicted RBP8.17□□□□□ -1.1
Retrieved 100 of 20,778 RNA–protein pairs in 36.6 ms