RNA–Protein interactions for RNA: ENST00000447439.6

KLHL3-202, Transcript of kelch like family member 3, humanhuman

TSL 1 (best)

Gene KLHL3, Length 2,697 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
KLHL3-202ENST00000447439 ARHGEF25Q86VW2 580 aa11.4□□□□□ -0.58
KLHL3-202ENST00000447439 KCNH5Q8NCM2 988 aa11.4□□□□□ -0.58
KLHL3-202ENST00000447439 FAM227BQ96M60 508 aa11.4□□□□□ -0.58
KLHL3-202ENST00000447439 TCEANC2Q96MN5 208 aa11.4□□□□□ -0.58
KLHL3-202ENST00000447439 PPP1R9BQ96SB3 815 aa11.4□□□□□ -0.58
KLHL3-202ENST00000447439 DIAPH3Q9NSV4 1193 aa11.4□□□□□ -0.58
KLHL3-202ENST00000447439 CNPY2Q9Y2B0 182 aa11.4□□□□□ -0.58
KLHL3-202ENST00000447439 NDUFB9Q9Y6M9 179 aa11.4□□□□□ -0.58
KLHL3-202ENST00000447439 MCM2P49736 904 aa11.4□□□□□ -0.59
KLHL3-202ENST00000447439 KIAA1211Q6ZU35 1233 aa11.4□□□□□ -0.59
KLHL3-202ENST00000447439 KAZALD1Q96I82 304 aa11.4□□□□□ -0.59
KLHL3-202ENST00000447439 BICC1Q9H694 974 aaKnown RBP11.4□□□□□ -0.59
KLHL3-202ENST00000447439 CCDC9Q9Y3X0 531 aaKnown RBP11.4□□□□□ -0.59
KLHL3-202ENST00000447439 RPAP1Q9BWH6 1393 aaPredicted RBP11.39□□□□□ -0.59
KLHL3-202ENST00000447439 IFIT2P09913 472 aaKnown RBP11.39□□□□□ -0.59
KLHL3-202ENST00000447439 CLASRPQ8N2M8 674 aaKnown RBP11.39□□□□□ -0.59
KLHL3-202ENST00000447439 EDC3Q96F86 508 aaKnown RBP11.39□□□□□ -0.59
KLHL3-202ENST00000447439 AOX1Q06278 1338 aa11.39□□□□□ -0.59
KLHL3-202ENST00000447439 CHGBP05060 677 aa11.39□□□□□ -0.59
KLHL3-202ENST00000447439 KSR2Q6VAB6 950 aa11.39□□□□□ -0.59
KLHL3-202ENST00000447439 CCDC83Q8IWF9 413 aa11.39□□□□□ -0.59
KLHL3-202ENST00000447439 CABLES1Q8TDN4 633 aa11.39□□□□□ -0.59
KLHL3-202ENST00000447439 JAKMIP1Q96N16 626 aaKnown RBP11.39□□□□□ -0.59
KLHL3-202ENST00000447439 ADAMTSL3P82987 1691 aa11.39□□□□□ -0.59
KLHL3-202ENST00000447439 SASH1O94885 1247 aa11.38□□□□□ -0.59
KLHL3-202ENST00000447439 LRSAM1Q6UWE0 723 aa11.38□□□□□ -0.59
KLHL3-202ENST00000447439 NECAB1Q8N987 351 aa11.38□□□□□ -0.59
KLHL3-202ENST00000447439 EAF2Q96CJ1 260 aaPredicted RBP11.38□□□□□ -0.59
KLHL3-202ENST00000447439 BOLA2Q9H3K6 86 aa11.38□□□□□ -0.59
KLHL3-202ENST00000447439 TAF6LQ9Y6J9 622 aa11.38□□□□□ -0.59
KLHL3-202ENST00000447439 TTC14Q96N46 770 aa11.38□□□□□ -0.59
KLHL3-202ENST00000447439 NLRP2Q9NX02 1062 aa11.38□□□□□ -0.59
KLHL3-202ENST00000447439 GLRX3O76003 335 aaKnown RBP11.37□□□□□ -0.59
KLHL3-202ENST00000447439 EPHA10Q5JZY3 1008 aa11.37□□□□□ -0.59
KLHL3-202ENST00000447439 KRT28Q7Z3Y7 464 aa11.37□□□□□ -0.59
KLHL3-202ENST00000447439 INTS4Q96HW7 963 aaKnown RBP11.37□□□□□ -0.59
KLHL3-202ENST00000447439 ECHDC1Q9NTX5 307 aa11.37□□□□□ -0.59
KLHL3-202ENST00000447439 FIBPO43427 364 aa11.37□□□□□ -0.59
KLHL3-202ENST00000447439 IGKV5-2P06315 115 aa11.37□□□□□ -0.59
KLHL3-202ENST00000447439 PDIA6Q15084 440 aa11.37□□□□□ -0.59
KLHL3-202ENST00000447439 RIC3Q7Z5B4 369 aa11.37□□□□□ -0.59
KLHL3-202ENST00000447439 NFATC2IPQ8NCF5 419 aa11.37□□□□□ -0.59
KLHL3-202ENST00000447439 MED1Q15648 1581 aaPredicted RBP11.37□□□□□ -0.59
KLHL3-202ENST00000447439 GRM8O00222 908 aa11.36□□□□□ -0.59
KLHL3-202ENST00000447439 HOXB7P09629 217 aa11.36□□□□□ -0.59
KLHL3-202ENST00000447439 SYT1P21579 422 aa11.36□□□□□ -0.59
KLHL3-202ENST00000447439 AMOTQ4VCS5 1084 aa11.36□□□□□ -0.59
KLHL3-202ENST00000447439 NMIQ13287 307 aaPredicted RBP11.36□□□□□ -0.59
KLHL3-202ENST00000447439 CHRNA2Q15822 529 aa11.36□□□□□ -0.59
KLHL3-202ENST00000447439 ZSCAN30Q86W11 494 aa11.36□□□□□ -0.59
KLHL3-202ENST00000447439 XAGE3Q8WTP9 111 aa11.36□□□□□ -0.59
KLHL3-202ENST00000447439 MYD88Q99836 296 aa11.36□□□□□ -0.59
KLHL3-202ENST00000447439 ADGRL3Q9HAR2 1447 aa11.36□□□□□ -0.59
KLHL3-202ENST00000447439 KCNJ4P48050 445 aa11.35□□□□□ -0.59
KLHL3-202ENST00000447439 ST3GAL1Q11201 340 aa11.35□□□□□ -0.59
KLHL3-202ENST00000447439 PDRG1Q9NUG6 133 aa11.35□□□□□ -0.59
KLHL3-202ENST00000447439 HYPKQ9NX55 129 aa11.35□□□□□ -0.59
KLHL3-202ENST00000447439 EIF2AK3Q9NZJ5 1116 aaKnown RBP11.35□□□□□ -0.59
KLHL3-202ENST00000447439 LIMCH1Q9UPQ0 1083 aa11.35□□□□□ -0.59
KLHL3-202ENST00000447439 WDR33Q9C0J8 1336 aaKnown RBP11.35□□□□□ -0.59
KLHL3-202ENST00000447439 A0A0D9SFI3 127 aa11.35□□□□□ -0.59
KLHL3-202ENST00000447439 MSNP26038 577 aaKnown RBP11.35□□□□□ -0.59
KLHL3-202ENST00000447439 HSP90AB4PQ58FF6 505 aa11.35□□□□□ -0.59
KLHL3-202ENST00000447439 COPS6Q7L5N1 327 aa11.35□□□□□ -0.59
KLHL3-202ENST00000447439 SMC3Q9UQE7 1217 aa11.35□□□□□ -0.59
KLHL3-202ENST00000447439 KDM3BQ7LBC6 1761 aa11.35□□□□□ -0.59
KLHL3-202ENST00000447439 ATP5J2-PTCD1G3V325 749 aa11.34□□□□□ -0.59
KLHL3-202ENST00000447439 PTCD1O75127 700 aaKnown RBP11.34□□□□□ -0.59
KLHL3-202ENST00000447439 MBD3O95983 291 aa11.34□□□□□ -0.59
KLHL3-202ENST00000447439 GJB2P29033 226 aa11.34□□□□□ -0.59
KLHL3-202ENST00000447439 G3BP1Q13283 466 aaKnown RBP eCLIP11.34□□□□□ -0.59
KLHL3-202ENST00000447439 FAM173BQ6P4H8 233 aa11.34□□□□□ -0.59
KLHL3-202ENST00000447439 PROSER2Q86WR7 435 aaPredicted RBP11.34□□□□□ -0.59
KLHL3-202ENST00000447439 CHMP3Q9Y3E7 222 aa11.34□□□□□ -0.59
KLHL3-202ENST00000447439 RBM8AQ9Y5S9 174 aaKnown RBP11.34□□□□□ -0.59
KLHL3-202ENST00000447439 USP16Q9Y5T5 823 aa11.34□□□□□ -0.59
KLHL3-202ENST00000447439 TTC41PQ6P2S7 1318 aa11.34□□□□□ -0.59
KLHL3-202ENST00000447439 VPS37CA5D8V6 355 aaPredicted RBP11.34□□□□□ -0.59
KLHL3-202ENST00000447439 STX6O43752 255 aa11.34□□□□□ -0.59
KLHL3-202ENST00000447439 ZSCAN22P10073 491 aaPredicted RBP11.34□□□□□ -0.59
KLHL3-202ENST00000447439 MTX1Q13505 466 aa11.34□□□□□ -0.59
KLHL3-202ENST00000447439 LINS1Q8NG48 757 aa11.34□□□□□ -0.59
KLHL3-202ENST00000447439 ZNF496Q96IT1 587 aaPredicted RBP11.34□□□□□ -0.59
KLHL3-202ENST00000447439 ALDH1L1O75891 902 aa11.33□□□□□ -0.59
KLHL3-202ENST00000447439 CSB-PGBD3P0DP91 1061 aa11.33□□□□□ -0.59
KLHL3-202ENST00000447439 DNM1Q05193 864 aaKnown RBP11.33□□□□□ -0.59
KLHL3-202ENST00000447439 ME3Q16798 604 aa11.33□□□□□ -0.59
KLHL3-202ENST00000447439 ZNF790Q6PG37 636 aa11.33□□□□□ -0.59
KLHL3-202ENST00000447439 FERMT3Q86UX7 667 aa11.33□□□□□ -0.59
KLHL3-202ENST00000447439 FSD1Q9BTV5 496 aa11.33□□□□□ -0.59
KLHL3-202ENST00000447439 TSPY26PQ9H489 355 aa11.33□□□□□ -0.59
KLHL3-202ENST00000447439 STK3Q13188 491 aa11.33□□□□□ -0.6
KLHL3-202ENST00000447439 SLFNL1Q499Z3 407 aa11.33□□□□□ -0.6
KLHL3-202ENST00000447439 ZNF589Q86UQ0 364 aaPredicted RBP11.33□□□□□ -0.6
KLHL3-202ENST00000447439 IL17RAQ96F46 866 aa11.33□□□□□ -0.6
KLHL3-202ENST00000447439 DDX21Q9NR30 783 aaKnown RBP eCLIP11.33□□□□□ -0.6
KLHL3-202ENST00000447439 TPCN1Q9ULQ1 816 aa11.33□□□□□ -0.6
KLHL3-202ENST00000447439 CREB3L3Q68CJ9 461 aa11.32□□□□□ -0.6
KLHL3-202ENST00000447439 RAPGEF4Q8WZA2 1011 aa11.32□□□□□ -0.6
KLHL3-202ENST00000447439 ERBB3P21860 1342 aa11.32□□□□□ -0.6
Retrieved 100 of 20,778 RNA–protein pairs in 16.4 ms