RNA–Protein interactions for RNA: ENST00000440271.5

TRIM39-210, Transcript of tripartite motif containing 39, humanhuman

TSL 3

Gene TRIM39, Length 588 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM39-210ENST00000440271 MASTLQ96GX5 879 aa27.76■■■□□ 2.03
TRIM39-210ENST00000440271 MKRN1Q9UHC7 482 aaKnown RBP27.76■■■□□ 2.03
TRIM39-210ENST00000440271 SOGA3Q5TF21 947 aa27.75■■■□□ 2.03
TRIM39-210ENST00000440271 SLX4Q8IY92 1834 aa27.74■■■□□ 2.03
TRIM39-210ENST00000440271 KCNQ3O43525 872 aa27.74■■■□□ 2.03
TRIM39-210ENST00000440271 DZIP3Q86Y13 1208 aaKnown RBP27.74■■■□□ 2.03
TRIM39-210ENST00000440271 COL3A1P02461 1466 aaPredicted RBP27.74■■■□□ 2.03
TRIM39-210ENST00000440271 BTBD11A6QL63 1104 aa27.72■■■□□ 2.03
TRIM39-210ENST00000440271 SIPA1L3O60292 1781 aaPredicted RBP27.72■■■□□ 2.03
TRIM39-210ENST00000440271 CEMIPQ8WUJ3 1361 aa27.72■■■□□ 2.03
TRIM39-210ENST00000440271 C7orf43Q8WVR3 580 aa27.71■■■□□ 2.03
TRIM39-210ENST00000440271 USP16Q9Y5T5 823 aa27.71■■■□□ 2.03
TRIM39-210ENST00000440271 IQCA1LA6NCM1 817 aa27.7■■■□□ 2.02
TRIM39-210ENST00000440271 CNGB1Q14028 1251 aaPredicted RBP27.7■■■□□ 2.02
TRIM39-210ENST00000440271 CCER1Q8TC90 406 aaPredicted RBP27.7■■■□□ 2.02
TRIM39-210ENST00000440271 PIP4K2AP48426 406 aaPredicted RBP27.69■■■□□ 2.02
TRIM39-210ENST00000440271 CLEC4GQ6UXB4 293 aa27.69■■■□□ 2.02
TRIM39-210ENST00000440271 NBPF5PQ86XG9 351 aaPredicted RBP27.69■■■□□ 2.02
TRIM39-210ENST00000440271 L3MBTL3Q96JM7 780 aaPredicted RBP27.69■■■□□ 2.02
TRIM39-210ENST00000440271 PHACTR3Q96KR7 559 aa27.69■■■□□ 2.02
TRIM39-210ENST00000440271 LDHDQ86WU2 507 aa27.68■■■□□ 2.02
TRIM39-210ENST00000440271 TAF1DQ9H5J8 278 aaPredicted RBP27.68■■■□□ 2.02
TRIM39-210ENST00000440271 PASKQ96RG2 1323 aa27.67■■■□□ 2.02
TRIM39-210ENST00000440271 CCDC93Q567U6 631 aa27.67■■■□□ 2.02
TRIM39-210ENST00000440271 CNTNAP1P78357 1384 aa27.66■■■□□ 2.02
TRIM39-210ENST00000440271 NPC1L1Q9UHC9 1359 aa27.66■■■□□ 2.02
TRIM39-210ENST00000440271 PRAMEF22A3QJZ6 481 aa27.66■■■□□ 2.02
TRIM39-210ENST00000440271 NPR1P16066 1061 aa27.66■■■□□ 2.02
TRIM39-210ENST00000440271 PRKAR2BP31323 418 aa27.65■■■□□ 2.02
TRIM39-210ENST00000440271 ZNF652Q9Y2D9 606 aa27.65■■■□□ 2.02
TRIM39-210ENST00000440271 CACNA1SQ13698 1873 aa27.65■■■□□ 2.02
TRIM39-210ENST00000440271 BCORQ6W2J9 1755 aa27.64■■■□□ 2.02
TRIM39-210ENST00000440271 ARFGEF2Q9Y6D5 1785 aa27.64■■■□□ 2.02
TRIM39-210ENST00000440271 KLRG2A4D1S0 409 aaPredicted RBP27.64■■■□□ 2.02
TRIM39-210ENST00000440271 FOXN1O15353 648 aa27.64■■■□□ 2.02
TRIM39-210ENST00000440271 SNRPA1P09661 255 aaKnown RBP27.63■■■□□ 2.01
TRIM39-210ENST00000440271 FKBP4Q02790 459 aaKnown RBP eCLIP27.63■■■□□ 2.01
TRIM39-210ENST00000440271 TPTE2Q6XPS3 522 aa27.63■■■□□ 2.01
TRIM39-210ENST00000440271 RSPH6AQ9H0K4 717 aa27.63■■■□□ 2.01
TRIM39-210ENST00000440271 ITGBL1O95965 494 aaPredicted RBP27.62■■■□□ 2.01
TRIM39-210ENST00000440271 ZNF277Q9NRM2 450 aaPredicted RBP27.62■■■□□ 2.01
TRIM39-210ENST00000440271 TMEM88BA6NKF7 163 aa27.61■■■□□ 2.01
TRIM39-210ENST00000440271 EAPPQ56P03 285 aaPredicted RBP27.61■■■□□ 2.01
TRIM39-210ENST00000440271 OLFM4Q6UX06 510 aa27.61■■■□□ 2.01
TRIM39-210ENST00000440271 SCN4AP35499 1836 aa27.61■■■□□ 2.01
TRIM39-210ENST00000440271 ZNF541Q9H0D2 1346 aa27.61■■■□□ 2.01
TRIM39-210ENST00000440271 VEGFBP49765 207 aa27.6■■■□□ 2.01
TRIM39-210ENST00000440271 RTKN2Q8IZC4 609 aa27.6■■■□□ 2.01
TRIM39-210ENST00000440271 HACL1Q9UJ83 578 aa27.6■■■□□ 2.01
TRIM39-210ENST00000440271 NIP7Q9Y221 180 aaKnown RBP eCLIP27.6■■■□□ 2.01
TRIM39-210ENST00000440271 PRDM10Q9NQV6 1147 aa27.59■■■□□ 2.01
TRIM39-210ENST00000440271 CLEC11AQ9Y240 323 aa27.59■■■□□ 2.01
TRIM39-210ENST00000440271 NBPF26B4DH59 902 aa27.58■■■□□ 2.01
TRIM39-210ENST00000440271 RGL2O15211 777 aa27.58■■■□□ 2.01
TRIM39-210ENST00000440271 NBPF10Q6P3W6 841 aaKnown RBP27.58■■■□□ 2.01
TRIM39-210ENST00000440271 MCM10Q7L590 875 aa27.58■■■□□ 2.01
TRIM39-210ENST00000440271 NBPF15Q8N660 670 aa27.58■■■□□ 2.01
TRIM39-210ENST00000440271 RTF1Q92541 710 aaKnown RBP27.58■■■□□ 2.01
TRIM39-210ENST00000440271 FAM177BA6PVY3 158 aa27.57■■■□□ 2
TRIM39-210ENST00000440271 EPHX2P34913 555 aa27.57■■■□□ 2
TRIM39-210ENST00000440271 AIDAQ96BJ3 306 aa27.57■■■□□ 2
TRIM39-210ENST00000440271 CFAP53Q96M91 514 aa27.57■■■□□ 2
TRIM39-210ENST00000440271 FZD9O00144 591 aa27.55■■■□□ 2
TRIM39-210ENST00000440271 ALDH1B1P30837 517 aa27.55■■■□□ 2
TRIM39-210ENST00000440271 CTCFP49711 727 aaPredicted RBP27.55■■■□□ 2
TRIM39-210ENST00000440271 PNMA8AQ86V59 439 aaPredicted RBP27.55■■■□□ 2
TRIM39-210ENST00000440271 SYNE4Q8N205 404 aa27.55■■■□□ 2
TRIM39-210ENST00000440271 NUDCQ9Y266 331 aa27.55■■■□□ 2
TRIM39-210ENST00000440271 IARSP41252 1262 aaKnown RBP27.54■■■□□ 2
TRIM39-210ENST00000440271 HLFQ16534 295 aa27.53■■■□□ 2
TRIM39-210ENST00000440271 CNTROBQ8N137 903 aa27.53■■■□□ 2
TRIM39-210ENST00000440271 WBP1LQ9NX94 342 aa27.53■■■□□ 2
TRIM39-210ENST00000440271 RNF123Q5XPI4 1314 aa27.52■■■□□ 2
TRIM39-210ENST00000440271 U2AF1L5P0DN76 240 aaPredicted RBP27.52■■■□□ 2
TRIM39-210ENST00000440271 GTF2E1P29083 439 aaPredicted RBP27.52■■■□□ 2
TRIM39-210ENST00000440271 U2AF1Q01081 240 aaKnown RBP eCLIP27.52■■■□□ 2
TRIM39-210ENST00000440271 DCTN1Q14203 1278 aa27.52■■■□□ 2
TRIM39-210ENST00000440271 MAP1SQ66K74 1059 aaPredicted RBP27.52■■■□□ 2
TRIM39-210ENST00000440271 GPC2Q8N158 579 aa27.51■■□□□ 1.99
TRIM39-210ENST00000440271 DEFB115Q30KQ5 88 aa27.5■■□□□ 1.99
TRIM39-210ENST00000440271 ADAMTSL1Q8N6G6 1762 aa27.5■■□□□ 1.99
TRIM39-210ENST00000440271 RASSF10A6NK89 507 aa27.49■■□□□ 1.99
TRIM39-210ENST00000440271 HTATSF1O43719 755 aaKnown RBP27.49■■□□□ 1.99
TRIM39-210ENST00000440271 PSMD1Q99460 953 aa27.49■■□□□ 1.99
TRIM39-210ENST00000440271 LBX1P52954 281 aa27.48■■□□□ 1.99
TRIM39-210ENST00000440271 TAF7Q15545 349 aaPredicted RBP27.48■■□□□ 1.99
TRIM39-210ENST00000440271 JDP2Q8WYK2 163 aa27.48■■□□□ 1.99
TRIM39-210ENST00000440271 CRY2Q49AN0 593 aa27.47■■□□□ 1.99
TRIM39-210ENST00000440271 MIS18AQ9NYP9 233 aa27.46■■□□□ 1.99
TRIM39-210ENST00000440271 SNED1Q8TER0 1413 aa27.45■■□□□ 1.98
TRIM39-210ENST00000440271 CC2D2BQ6DHV5 1058 aa27.45■■□□□ 1.98
TRIM39-210ENST00000440271 NUTM1Q86Y26 1132 aa27.45■■□□□ 1.98
TRIM39-210ENST00000440271 NYXQ9GZU5 481 aa27.45■■□□□ 1.98
TRIM39-210ENST00000440271 NGEFQ8N5V2 710 aa27.44■■□□□ 1.98
TRIM39-210ENST00000440271 GJA3Q9Y6H8 435 aa27.44■■□□□ 1.98
TRIM39-210ENST00000440271 WDR33Q9C0J8 1336 aaKnown RBP27.43■■□□□ 1.98
TRIM39-210ENST00000440271 ERVV-1B6SEH8 477 aa27.43■■□□□ 1.98
TRIM39-210ENST00000440271 PPP2R1AP30153 589 aa27.43■■□□□ 1.98
TRIM39-210ENST00000440271 EIF6P56537 245 aaKnown RBP27.43■■□□□ 1.98
TRIM39-210ENST00000440271 ABT1Q9ULW3 272 aaKnown RBP27.43■■□□□ 1.98
Retrieved 100 of 20,778 RNA–protein pairs in 64.3 ms