RNA–Protein interactions for RNA: ENST00000438888.5

PRAME-208, Transcript of preferentially expressed antigen in melanoma, humanhuman

APPRIS ALT2 TSL 4

Gene PRAME, Length 566 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PRAME-208ENST00000438888 USP16Q9Y5T5 823 aa16.42■□□□□ 0.22
PRAME-208ENST00000438888 ZC3H4Q9UPT8 1303 aaKnown RBP16.42■□□□□ 0.22
PRAME-208ENST00000438888 COL11A2P13942 1736 aaPredicted RBP16.42■□□□□ 0.22
PRAME-208ENST00000438888 ANKRD31Q8N7Z5 1873 aa16.42■□□□□ 0.22
PRAME-208ENST00000438888 GLTPD2A6NH11 291 aa16.41■□□□□ 0.22
PRAME-208ENST00000438888 ST5P78524 1137 aa16.41■□□□□ 0.22
PRAME-208ENST00000438888 SMC1BQ8NDV3 1235 aa16.41■□□□□ 0.22
PRAME-208ENST00000438888 TIAM2Q8IVF5 1701 aa16.41■□□□□ 0.22
PRAME-208ENST00000438888 VEGFAP15692 232 aaPredicted RBP16.39■□□□□ 0.21
PRAME-208ENST00000438888 PNISRQ8TF01 805 aaKnown RBP16.39■□□□□ 0.21
PRAME-208ENST00000438888 KLRG1Q96E93 195 aa16.39■□□□□ 0.21
PRAME-208ENST00000438888 FAM177BA6PVY3 158 aa16.38■□□□□ 0.21
PRAME-208ENST00000438888 SNRPA1P09661 255 aaKnown RBP16.38■□□□□ 0.21
PRAME-208ENST00000438888 ERFEQ4G0M1 354 aa16.38■□□□□ 0.21
PRAME-208ENST00000438888 PRPF40BQ6NWY9 871 aaKnown RBP16.38■□□□□ 0.21
PRAME-208ENST00000438888 NBPF5PQ86XG9 351 aaPredicted RBP16.38■□□□□ 0.21
PRAME-208ENST00000438888 PDZRN3Q9UPQ7 1066 aa16.38■□□□□ 0.21
PRAME-208ENST00000438888 BCORQ6W2J9 1755 aa16.37■□□□□ 0.21
PRAME-208ENST00000438888 WDR43Q15061 677 aaKnown RBP eCLIP16.37■□□□□ 0.218e-17■□□□□ 8.1
PRAME-208ENST00000438888 CNKSR1Q969H4 720 aa16.37■□□□□ 0.21
PRAME-208ENST00000438888 TAOK3Q9H2K8 898 aa16.37■□□□□ 0.21
PRAME-208ENST00000438888 MIS18AQ9NYP9 233 aa16.37■□□□□ 0.21
PRAME-208ENST00000438888 SRGNP10124 158 aa16.36■□□□□ 0.21
PRAME-208ENST00000438888 FAM9BQ8IZU0 186 aa16.36■□□□□ 0.21
PRAME-208ENST00000438888 MASTLQ96GX5 879 aa16.36■□□□□ 0.21
PRAME-208ENST00000438888 ZNF652Q9Y2D9 606 aa16.36■□□□□ 0.21
PRAME-208ENST00000438888 NBPF26B4DH59 902 aa16.35■□□□□ 0.21
PRAME-208ENST00000438888 STYK1Q6J9G0 422 aa16.35■□□□□ 0.21
PRAME-208ENST00000438888 DPY19L2Q6NUT2 758 aa16.35■□□□□ 0.21
PRAME-208ENST00000438888 NBPF10Q6P3W6 841 aaKnown RBP16.35■□□□□ 0.21
PRAME-208ENST00000438888 NBPF15Q8N660 670 aa16.35■□□□□ 0.21
PRAME-208ENST00000438888 NIP7Q9Y221 180 aaKnown RBP eCLIP16.35■□□□□ 0.21
PRAME-208ENST00000438888 CCDC88AQ3V6T2 1871 aa16.34■□□□□ 0.21
PRAME-208ENST00000438888 NGEFQ8N5V2 710 aa16.34■□□□□ 0.21
PRAME-208ENST00000438888 POTECB2RU33 542 aa16.33■□□□□ 0.2
PRAME-208ENST00000438888 NEFMP07197 916 aa16.33■□□□□ 0.2
PRAME-208ENST00000438888 SLX4Q8IY92 1834 aa16.33■□□□□ 0.2
PRAME-208ENST00000438888 CACNA1SQ13698 1873 aa16.33■□□□□ 0.2
PRAME-208ENST00000438888 HTATSF1O43719 755 aaKnown RBP16.32■□□□□ 0.2
PRAME-208ENST00000438888 DDNO94850 711 aaPredicted RBP16.32■□□□□ 0.2
PRAME-208ENST00000438888 TAF7Q15545 349 aaPredicted RBP16.32■□□□□ 0.2
PRAME-208ENST00000438888 HLFQ16534 295 aa16.32■□□□□ 0.2
PRAME-208ENST00000438888 CLEC4GQ6UXB4 293 aa16.32■□□□□ 0.2
PRAME-208ENST00000438888 LTBP3Q9NS15 1303 aa16.32■□□□□ 0.2
PRAME-208ENST00000438888 FER1L6Q2WGJ9 1857 aa16.31■□□□□ 0.2
PRAME-208ENST00000438888 CCDC93Q567U6 631 aa16.31■□□□□ 0.2
PRAME-208ENST00000438888 SOGA3Q5TF21 947 aa16.31■□□□□ 0.2
PRAME-208ENST00000438888 OLFM4Q6UX06 510 aa16.31■□□□□ 0.2
PRAME-208ENST00000438888 JMYQ8N9B5 988 aa16.31■□□□□ 0.2
PRAME-208ENST00000438888 THUMPD2Q9BTF0 503 aaKnown RBP16.31■□□□□ 0.2
PRAME-208ENST00000438888 ADAMTS8Q9UP79 889 aa16.31■□□□□ 0.2
PRAME-208ENST00000438888 POTEIP0CG38 1075 aa16.3■□□□□ 0.2
PRAME-208ENST00000438888 POTEJP0CG39 1038 aa16.3■□□□□ 0.2
PRAME-208ENST00000438888 NPR1P16066 1061 aa16.3■□□□□ 0.2
PRAME-208ENST00000438888 GTF2E1P29083 439 aaPredicted RBP16.3■□□□□ 0.2
PRAME-208ENST00000438888 TPTE2Q6XPS3 522 aa16.3■□□□□ 0.2
PRAME-208ENST00000438888 ZNF277Q9NRM2 450 aaPredicted RBP16.29■□□□□ 0.2
PRAME-208ENST00000438888 RRP7AQ9Y3A4 280 aaKnown RBP16.29■□□□□ 0.2
PRAME-208ENST00000438888 COL13A1Q5TAT6 717 aaPredicted RBP16.28■□□□□ 0.2
PRAME-208ENST00000438888 ABCC12Q96J65 1359 aa16.27■□□□□ 0.2
PRAME-208ENST00000438888 MAPK8IP3Q9UPT6 1336 aa16.27■□□□□ 0.2
PRAME-208ENST00000438888 MYL6BP14649 208 aa16.27■□□□□ 0.2
PRAME-208ENST00000438888 FKBP4Q02790 459 aaKnown RBP eCLIP16.27■□□□□ 0.2
PRAME-208ENST00000438888 CHADLQ6NUI6 762 aa16.27■□□□□ 0.2
PRAME-208ENST00000438888 NUTM1Q86Y26 1132 aa16.27■□□□□ 0.2
PRAME-208ENST00000438888 C7orf43Q8WVR3 580 aa16.27■□□□□ 0.2
PRAME-208ENST00000438888 LAMB4A4D0S4 1761 aa16.27■□□□□ 0.2
PRAME-208ENST00000438888 ARFGEF2Q9Y6D5 1785 aa16.27■□□□□ 0.2
PRAME-208ENST00000438888 PCNTO95613 3336 aa16.26■□□□□ 0.19
PRAME-208ENST00000438888 ZNF541Q9H0D2 1346 aa16.26■□□□□ 0.19
PRAME-208ENST00000438888 DICER1Q9UPY3 1922 aaKnown RBP16.26■□□□□ 0.19
PRAME-208ENST00000438888 GPTP24298 496 aa16.26■□□□□ 0.19
PRAME-208ENST00000438888 NFE2L2Q16236 605 aa16.26■□□□□ 0.19
PRAME-208ENST00000438888 KIF6Q6ZMV9 814 aa16.26■□□□□ 0.19
PRAME-208ENST00000438888 TTLL7Q6ZT98 887 aa16.26■□□□□ 0.19
PRAME-208ENST00000438888 ZBTB3Q9H5J0 574 aa16.26■□□□□ 0.19
PRAME-208ENST00000438888 KLRG2A4D1S0 409 aaPredicted RBP16.25■□□□□ 0.19
PRAME-208ENST00000438888 EIF4A1P60842 406 aaKnown RBP16.25■□□□□ 0.19
PRAME-208ENST00000438888 PLEKHF1Q96S99 279 aa16.25■□□□□ 0.19
PRAME-208ENST00000438888 PNNQ9H307 717 aaKnown RBP16.25■□□□□ 0.19
PRAME-208ENST00000438888 MAP3K15Q6ZN16 1313 aa16.24■□□□□ 0.19
PRAME-208ENST00000438888 KDM3BQ7LBC6 1761 aa16.24■□□□□ 0.19
PRAME-208ENST00000438888 IQCA1LA6NCM1 817 aa16.24■□□□□ 0.19
PRAME-208ENST00000438888 RGL2O15211 777 aa16.24■□□□□ 0.19
PRAME-208ENST00000438888 CAPN15O75808 1086 aa16.24■□□□□ 0.19
PRAME-208ENST00000438888 HSPA1AP0DMV8 641 aaKnown RBP16.24■□□□□ 0.19
PRAME-208ENST00000438888 HSPA1BP0DMV9 641 aaKnown RBP16.24■□□□□ 0.19
PRAME-208ENST00000438888 EAPPQ56P03 285 aaPredicted RBP16.24■□□□□ 0.19
PRAME-208ENST00000438888 CCDC146Q8IYE0 955 aa16.24■□□□□ 0.19
PRAME-208ENST00000438888 YTHDC1Q96MU7 727 aaKnown RBP16.24■□□□□ 0.19
PRAME-208ENST00000438888 MKRN1Q9UHC7 482 aaKnown RBP16.24■□□□□ 0.19
PRAME-208ENST00000438888 ALDH1B1P30837 517 aa16.23■□□□□ 0.19
PRAME-208ENST00000438888 RTKN2Q8IZC4 609 aa16.23■□□□□ 0.19
PRAME-208ENST00000438888 RUNDC1Q96C34 613 aa16.23■□□□□ 0.19
PRAME-208ENST00000438888 NYXQ9GZU5 481 aa16.23■□□□□ 0.19
PRAME-208ENST00000438888 DLG5Q8TDM6 1919 aa16.23■□□□□ 0.19
PRAME-208ENST00000438888 UBN2Q6ZU65 1347 aa16.22■□□□□ 0.19
PRAME-208ENST00000438888 ERVV-1B6SEH8 477 aa16.22■□□□□ 0.19
PRAME-208ENST00000438888 IARSP41252 1262 aaKnown RBP16.22■□□□□ 0.19
PRAME-208ENST00000438888 SYNE4Q8N205 404 aa16.22■□□□□ 0.19
Retrieved 100 of 20,778 RNA–protein pairs in 78.3 ms