RNA–Protein interactions for RNA: ENST00000438700.7

PTCHD3-201, Transcript of patched domain containing 3, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene PTCHD3, Length 2,529 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTCHD3-201ENST00000438700 TMOD3Q9NYL9 352 aa17.02■□□□□ 0.31
PTCHD3-201ENST00000438700 CASC1Q6TDU7 716 aa17.01■□□□□ 0.31
PTCHD3-201ENST00000438700 USP26Q9BXU7 913 aa17.01■□□□□ 0.31
PTCHD3-201ENST00000438700 ITGB4P16144 1822 aa17.01■□□□□ 0.31
PTCHD3-201ENST00000438700 PTCD1O75127 700 aaKnown RBP17.01■□□□□ 0.31
PTCHD3-201ENST00000438700 ATP8B2P98198 1209 aa17.01■□□□□ 0.31
PTCHD3-201ENST00000438700 LRRCC1Q9C099 1032 aa17.01■□□□□ 0.31
PTCHD3-201ENST00000438700 TNS2Q63HR2 1409 aa17.01■□□□□ 0.31
PTCHD3-201ENST00000438700 CWF19L2Q2TBE0 894 aaKnown RBP17■□□□□ 0.31
PTCHD3-201ENST00000438700 COPS6Q7L5N1 327 aa17■□□□□ 0.31
PTCHD3-201ENST00000438700 LRP10Q7Z4F1 713 aa17■□□□□ 0.31
PTCHD3-201ENST00000438700 KAT6BQ8WYB5 2073 aa17■□□□□ 0.31
PTCHD3-201ENST00000438700 NWD2Q9ULI1 1742 aa16.99■□□□□ 0.31
PTCHD3-201ENST00000438700 SPATA31A1Q5TZJ5 1347 aa16.99■□□□□ 0.31
PTCHD3-201ENST00000438700 EXOC5O00471 708 aa16.99■□□□□ 0.31
PTCHD3-201ENST00000438700 ALDH1L1O75891 902 aa16.99■□□□□ 0.31
PTCHD3-201ENST00000438700 RIC3Q7Z5B4 369 aa16.99■□□□□ 0.31
PTCHD3-201ENST00000438700 LINS1Q8NG48 757 aa16.98■□□□□ 0.31
PTCHD3-201ENST00000438700 PIGBQ92521 554 aa16.98■□□□□ 0.31
PTCHD3-201ENST00000438700 OSBPL3Q9H4L5 887 aa16.98■□□□□ 0.31
PTCHD3-201ENST00000438700 IBTKQ9P2D0 1353 aaPredicted RBP16.97■□□□□ 0.31
PTCHD3-201ENST00000438700 MX1P20591 662 aa16.97■□□□□ 0.31
PTCHD3-201ENST00000438700 TNPO1Q92973 898 aaKnown RBP16.97■□□□□ 0.31
PTCHD3-201ENST00000438700 C9orf78Q9NZ63 289 aaPredicted RBP16.97■□□□□ 0.31
PTCHD3-201ENST00000438700 SLIT2O94813 1529 aa16.97■□□□□ 0.31
PTCHD3-201ENST00000438700 CLCN1P35523 988 aa16.97■□□□□ 0.31
PTCHD3-201ENST00000438700 RABEP1Q15276 862 aa16.97■□□□□ 0.31
PTCHD3-201ENST00000438700 CERKQ8TCT0 537 aa16.97■□□□□ 0.31
PTCHD3-201ENST00000438700 IL1RAPL2Q9NP60 686 aa16.97■□□□□ 0.31
PTCHD3-201ENST00000438700 LRP6O75581 1613 aa16.96■□□□□ 0.31
PTCHD3-201ENST00000438700 ERBB4Q15303 1308 aa16.96■□□□□ 0.31
PTCHD3-201ENST00000438700 PPP1R42Q7Z4L9 355 aa16.96■□□□□ 0.31
PTCHD3-201ENST00000438700 ASAP1Q9ULH1 1129 aa16.96■□□□□ 0.31
PTCHD3-201ENST00000438700 ARFGEF2Q9Y6D5 1785 aa16.96■□□□□ 0.31
PTCHD3-201ENST00000438700 SALL3Q9BXA9 1300 aa16.96■□□□□ 0.31
PTCHD3-201ENST00000438700 NBPF26B4DH59 902 aa16.96■□□□□ 0.3
PTCHD3-201ENST00000438700 NBPF14Q5TI25 921 aa16.96■□□□□ 0.3
PTCHD3-201ENST00000438700 NBPF10Q6P3W6 841 aaKnown RBP16.96■□□□□ 0.3
PTCHD3-201ENST00000438700 ANKRD13DQ6ZTN6 518 aa16.96■□□□□ 0.3
PTCHD3-201ENST00000438700 NBPF15Q8N660 670 aa16.96■□□□□ 0.3
PTCHD3-201ENST00000438700 THRAP3Q9Y2W1 955 aaKnown RBP16.96■□□□□ 0.3
PTCHD3-201ENST00000438700 CCDC9Q9Y3X0 531 aaKnown RBP16.96■□□□□ 0.3
PTCHD3-201ENST00000438700 SPATA31A5Q5VU36 1347 aa16.95■□□□□ 0.3
PTCHD3-201ENST00000438700 SPATA31A7Q8IWB4 1347 aa16.95■□□□□ 0.3
PTCHD3-201ENST00000438700 ERC2O15083 957 aa16.95■□□□□ 0.3
PTCHD3-201ENST00000438700 REC8O95072 547 aa16.95■□□□□ 0.3
PTCHD3-201ENST00000438700 IGKV5-2P06315 115 aa16.95■□□□□ 0.3
PTCHD3-201ENST00000438700 SSH3Q8TE77 659 aa16.95■□□□□ 0.3
PTCHD3-201ENST00000438700 CDCA7Q9BWT1 371 aaPredicted RBP16.95■□□□□ 0.3
PTCHD3-201ENST00000438700 TRIM6-TRIM34B2RNG4 842 aa16.95■□□□□ 0.3
PTCHD3-201ENST00000438700 A1BGP04217 495 aa16.95■□□□□ 0.3
PTCHD3-201ENST00000438700 NEXNQ0ZGT2 675 aa16.95■□□□□ 0.3
PTCHD3-201ENST00000438700 RILPL2Q969X0 211 aa16.95■□□□□ 0.3
PTCHD3-201ENST00000438700 MYD88Q99836 296 aa16.95■□□□□ 0.3
PTCHD3-201ENST00000438700 METTL22Q9BUU2 404 aaPredicted RBP16.95■□□□□ 0.3
PTCHD3-201ENST00000438700 JCADQ9P266 1359 aa16.95■□□□□ 0.3
PTCHD3-201ENST00000438700 DOT1LQ8TEK3 1739 aa16.94■□□□□ 0.3
PTCHD3-201ENST00000438700 SRGAP3O43295 1099 aa16.94■□□□□ 0.3
PTCHD3-201ENST00000438700 GAS2L3Q86XJ1 694 aa16.94■□□□□ 0.3
PTCHD3-201ENST00000438700 GRPEL1Q9HAV7 217 aa16.94■□□□□ 0.3
PTCHD3-201ENST00000438700 CIZ1Q9ULV3 898 aaPredicted RBP16.94■□□□□ 0.3
PTCHD3-201ENST00000438700 BCL9O00512 1426 aa16.94■□□□□ 0.3
PTCHD3-201ENST00000438700 GRM8O00222 908 aa16.94■□□□□ 0.3
PTCHD3-201ENST00000438700 RAB3GAP1Q15042 981 aa16.94■□□□□ 0.3
PTCHD3-201ENST00000438700 ATG3Q9NT62 314 aa16.94■□□□□ 0.3
PTCHD3-201ENST00000438700 AFDNP55196 1824 aaKnown RBP16.93■□□□□ 0.3
PTCHD3-201ENST00000438700 POLA2Q14181 598 aa16.93■□□□□ 0.3
PTCHD3-201ENST00000438700 DDB1Q16531 1140 aa16.93■□□□□ 0.3
PTCHD3-201ENST00000438700 AK9Q5TCS8 1911 aa16.93■□□□□ 0.3
PTCHD3-201ENST00000438700 DDX11L8A8MPP1 907 aa16.93■□□□□ 0.3
PTCHD3-201ENST00000438700 NEURL1BA8MQ27 555 aa16.93■□□□□ 0.3
PTCHD3-201ENST00000438700 SURF6O75683 361 aaKnown RBP16.93■□□□□ 0.3
PTCHD3-201ENST00000438700 MRE11P49959 708 aa16.93■□□□□ 0.3
PTCHD3-201ENST00000438700 SYTL4Q96C24 671 aaPredicted RBP16.93■□□□□ 0.3
PTCHD3-201ENST00000438700 NUTM1Q86Y26 1132 aa16.92■□□□□ 0.3
PTCHD3-201ENST00000438700 C8orf37Q96NL8 207 aa16.92■□□□□ 0.3
PTCHD3-201ENST00000438700 UTYO14607 1347 aa16.91■□□□□ 0.3
PTCHD3-201ENST00000438700 UNC5CLQ8IV45 518 aa16.91■□□□□ 0.3
PTCHD3-201ENST00000438700 PLBD2Q8NHP8 589 aa16.91■□□□□ 0.3
PTCHD3-201ENST00000438700 SSFA2P28290 1259 aa16.91■□□□□ 0.3
PTCHD3-201ENST00000438700 GCKRQ14397 625 aa16.91■□□□□ 0.3
PTCHD3-201ENST00000438700 SUCLG2Q96I99 432 aa16.91■□□□□ 0.3
PTCHD3-201ENST00000438700 NUP188Q5SRE5 1749 aa16.9■□□□□ 0.3
PTCHD3-201ENST00000438700 PRIM1P49642 420 aaKnown RBP16.9■□□□□ 0.3
PTCHD3-201ENST00000438700 TTLL7Q6ZT98 887 aa16.9■□□□□ 0.3
PTCHD3-201ENST00000438700 DNAJC10Q8IXB1 793 aa16.9■□□□□ 0.3
PTCHD3-201ENST00000438700 NGLY1Q96IV0 654 aa16.9■□□□□ 0.3
PTCHD3-201ENST00000438700 HDAC5Q9UQL6 1122 aa16.9■□□□□ 0.3
PTCHD3-201ENST00000438700 TUBGCP6Q96RT7 1819 aa16.9■□□□□ 0.3
PTCHD3-201ENST00000438700 MTX1Q13505 466 aa16.9■□□□□ 0.3
PTCHD3-201ENST00000438700 VSIG10Q8N0Z9 540 aa16.9■□□□□ 0.3
PTCHD3-201ENST00000438700 GBP4Q96PP9 640 aa16.9■□□□□ 0.3
PTCHD3-201ENST00000438700 ESYT1Q9BSJ8 1104 aa16.9■□□□□ 0.3
PTCHD3-201ENST00000438700 BARGINQ6ZT62 677 aa16.89■□□□□ 0.29
PTCHD3-201ENST00000438700 KAZALD1Q96I82 304 aa16.89■□□□□ 0.29
PTCHD3-201ENST00000438700 ATP5J2-PTCD1G3V325 749 aa16.89■□□□□ 0.29
PTCHD3-201ENST00000438700 ST18O60284 1047 aa16.89■□□□□ 0.29
PTCHD3-201ENST00000438700 MAP4K4O95819 1239 aaPredicted RBP16.89■□□□□ 0.29
PTCHD3-201ENST00000438700 BCL9LQ86UU0 1499 aa16.88■□□□□ 0.29
PTCHD3-201ENST00000438700 ESPNB1AK53 854 aa16.88■□□□□ 0.29
Retrieved 100 of 20,778 RNA–protein pairs in 18.8 ms