RNA–Protein interactions for RNA: ENST00000437600.8

CUX1-206, Transcript of cut like homeobox 1, humanhuman

TSL 1 (best) BASIC

Gene CUX1, Length 3,031 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Exosome, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1-206ENST00000437600 DDIT3P35638 169 aa11.6□□□□□ -0.55
CUX1-206ENST00000437600 NEK4P51957 841 aa11.6□□□□□ -0.55
CUX1-206ENST00000437600 DNAAF4Q8WXU2 420 aa11.6□□□□□ -0.55
CUX1-206ENST00000437600 SYTL4Q96C24 671 aaPredicted RBP11.6□□□□□ -0.55
CUX1-206ENST00000437600 USP21Q9UK80 565 aa11.6□□□□□ -0.55
CUX1-206ENST00000437600 PA2G4Q9UQ80 394 aaKnown RBP11.6□□□□□ -0.55
CUX1-206ENST00000437600 SHANK3Q9BYB0 1731 aa11.6□□□□□ -0.55
CUX1-206ENST00000437600 PTCD1O75127 700 aaKnown RBP11.6□□□□□ -0.55
CUX1-206ENST00000437600 DBF4Q9UBU7 674 aaPredicted RBP11.6□□□□□ -0.55
CUX1-206ENST00000437600 NRAPQ86VF7 1730 aa11.6□□□□□ -0.55
CUX1-206ENST00000437600 ABCC6O95255 1503 aa11.6□□□□□ -0.55
CUX1-206ENST00000437600 NCLP19338 710 aaKnown RBP11.6□□□□□ -0.55
CUX1-206ENST00000437600 CABP4P57796 275 aa11.6□□□□□ -0.55
CUX1-206ENST00000437600 BCL9LQ86UU0 1499 aa11.59□□□□□ -0.55
CUX1-206ENST00000437600 SPATA31A1Q5TZJ5 1347 aa11.59□□□□□ -0.55
CUX1-206ENST00000437600 AK9Q5TCS8 1911 aa11.59□□□□□ -0.55
CUX1-206ENST00000437600 TTC5Q8N0Z6 440 aa11.59□□□□□ -0.55
CUX1-206ENST00000437600 PARP4Q9UKK3 1724 aaKnown RBP11.59□□□□□ -0.55
CUX1-206ENST00000437600 SOS1Q07889 1333 aaPredicted RBP11.59□□□□□ -0.55
CUX1-206ENST00000437600 CASC1Q6TDU7 716 aa11.59□□□□□ -0.55
CUX1-206ENST00000437600 BCL11BQ9C0K0 894 aaPredicted RBP11.59□□□□□ -0.55
CUX1-206ENST00000437600 SCN11AQ9UI33 1791 aa11.59□□□□□ -0.55
CUX1-206ENST00000437600 ADCY9O60503 1353 aa11.58□□□□□ -0.55
CUX1-206ENST00000437600 SLIT2O94813 1529 aa11.58□□□□□ -0.56
CUX1-206ENST00000437600 PKD1L3Q7Z443 1732 aa11.58□□□□□ -0.56
CUX1-206ENST00000437600 ERC2O15083 957 aa11.58□□□□□ -0.56
CUX1-206ENST00000437600 GAS2L3Q86XJ1 694 aa11.58□□□□□ -0.56
CUX1-206ENST00000437600 ACSBG1Q96GR2 724 aa11.58□□□□□ -0.56
CUX1-206ENST00000437600 AFF2P51816 1311 aa11.58□□□□□ -0.56
CUX1-206ENST00000437600 OS9Q13438 667 aaPredicted RBP11.58□□□□□ -0.56
CUX1-206ENST00000437600 BEND3Q5T5X7 828 aa11.58□□□□□ -0.56
CUX1-206ENST00000437600 KLHDC4Q8TBB5 520 aa11.58□□□□□ -0.56
CUX1-206ENST00000437600 TNFRSF11AQ9Y6Q6 616 aaPredicted RBP11.58□□□□□ -0.56
CUX1-206ENST00000437600 GOLGA6L3A6NEY3 463 aa11.57□□□□□ -0.56
CUX1-206ENST00000437600 RAB3GAP1Q15042 981 aa11.57□□□□□ -0.56
CUX1-206ENST00000437600 DCAF5Q96JK2 942 aa11.57□□□□□ -0.56
CUX1-206ENST00000437600 ZMYND15Q9H091 742 aa11.57□□□□□ -0.56
CUX1-206ENST00000437600 ZNF330Q9Y3S2 320 aaPredicted RBP11.57□□□□□ -0.56
CUX1-206ENST00000437600 PCDH11XQ9BZA7 1347 aa11.57□□□□□ -0.56
CUX1-206ENST00000437600 PCDH11YQ9BZA8 1340 aa11.57□□□□□ -0.56
CUX1-206ENST00000437600 MCTP1Q6DN14 999 aa11.57□□□□□ -0.56
CUX1-206ENST00000437600 C9orf78Q9NZ63 289 aaPredicted RBP11.57□□□□□ -0.56
CUX1-206ENST00000437600 SPATA31A5Q5VU36 1347 aa11.57□□□□□ -0.56
CUX1-206ENST00000437600 SPATA31A7Q8IWB4 1347 aa11.57□□□□□ -0.56
CUX1-206ENST00000437600 PDIA6Q15084 440 aa11.57□□□□□ -0.56
CUX1-206ENST00000437600 COPS6Q7L5N1 327 aa11.57□□□□□ -0.56
CUX1-206ENST00000437600 XAGE3Q8WTP9 111 aa11.57□□□□□ -0.56
CUX1-206ENST00000437600 SIL1Q9H173 461 aa11.57□□□□□ -0.56
CUX1-206ENST00000437600 SPATA31A6Q5VVP1 1343 aa11.56□□□□□ -0.56
CUX1-206ENST00000437600 EXOC5O00471 708 aa11.56□□□□□ -0.56
CUX1-206ENST00000437600 HOXB7P09629 217 aa11.56□□□□□ -0.56
CUX1-206ENST00000437600 CHMLP26374 656 aa11.56□□□□□ -0.56
CUX1-206ENST00000437600 RABEP1Q15276 862 aa11.56□□□□□ -0.56
CUX1-206ENST00000437600 DDB1Q16531 1140 aa11.56□□□□□ -0.56
CUX1-206ENST00000437600 RIC3Q7Z5B4 369 aa11.56□□□□□ -0.56
CUX1-206ENST00000437600 RHPN1Q8TCX5 695 aa11.56□□□□□ -0.56
CUX1-206ENST00000437600 REC8O95072 547 aa11.55□□□□□ -0.56
CUX1-206ENST00000437600 CPA1P15085 419 aa11.55□□□□□ -0.56
CUX1-206ENST00000437600 CWC27Q6UX04 472 aaKnown RBP11.55□□□□□ -0.56
CUX1-206ENST00000437600 ESYT1Q9BSJ8 1104 aa11.55□□□□□ -0.56
CUX1-206ENST00000437600 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP11.55□□□□□ -0.567e-7■■□□□ 13.1
CUX1-206ENST00000437600 TOGARAM1Q9Y4F4 1720 aa11.55□□□□□ -0.56
CUX1-206ENST00000437600 KDM3BQ7LBC6 1761 aa11.55□□□□□ -0.56
CUX1-206ENST00000437600 ATP5J2-PTCD1G3V325 749 aa11.54□□□□□ -0.56
CUX1-206ENST00000437600 KSR2Q6VAB6 950 aa11.54□□□□□ -0.56
CUX1-206ENST00000437600 DDX21Q9NR30 783 aaKnown RBP eCLIP11.54□□□□□ -0.561e-7■□□□□ 10.9
CUX1-206ENST00000437600 SIPA1L3O60292 1781 aaPredicted RBP11.54□□□□□ -0.56
CUX1-206ENST00000437600 PTF1AQ7RTS3 328 aa11.54□□□□□ -0.56
CUX1-206ENST00000437600 FNBP4Q8N3X1 1017 aaPredicted RBP11.54□□□□□ -0.56
CUX1-206ENST00000437600 NWD2Q9ULI1 1742 aa11.54□□□□□ -0.56
CUX1-206ENST00000437600 IBTKQ9P2D0 1353 aaPredicted RBP11.54□□□□□ -0.56
CUX1-206ENST00000437600 UTRNP46939 3433 aa11.54□□□□□ -0.56
CUX1-206ENST00000437600 DISP2A7MBM2 1401 aa11.54□□□□□ -0.56
CUX1-206ENST00000437600 MARCH10Q8NA82 808 aaPredicted RBP11.54□□□□□ -0.56
CUX1-206ENST00000437600 SSH3Q8TE77 659 aa11.54□□□□□ -0.56
CUX1-206ENST00000437600 MYD88Q99836 296 aa11.54□□□□□ -0.56
CUX1-206ENST00000437600 DDX49Q9Y6V7 483 aaKnown RBP11.54□□□□□ -0.56
CUX1-206ENST00000437600 HEG1Q9ULI3 1381 aa11.53□□□□□ -0.56
CUX1-206ENST00000437600 ST18O60284 1047 aa11.53□□□□□ -0.56
CUX1-206ENST00000437600 BAG4O95429 457 aaKnown RBP11.53□□□□□ -0.56
CUX1-206ENST00000437600 GBP4Q96PP9 640 aa11.53□□□□□ -0.56
CUX1-206ENST00000437600 OSBPL3Q9H4L5 887 aa11.53□□□□□ -0.56
CUX1-206ENST00000437600 ASAP1Q9ULH1 1129 aa11.53□□□□□ -0.56
CUX1-206ENST00000437600 SALL3Q9BXA9 1300 aa11.53□□□□□ -0.56
CUX1-206ENST00000437600 WNK3Q9BYP7 1800 aa11.53□□□□□ -0.56
CUX1-206ENST00000437600 KCNQ2O43526 872 aa11.53□□□□□ -0.56
CUX1-206ENST00000437600 PRPF40AO75400 957 aaKnown RBP11.53□□□□□ -0.56
CUX1-206ENST00000437600 A1BGP04217 495 aa11.53□□□□□ -0.56
CUX1-206ENST00000437600 SNRPA1P09661 255 aaKnown RBP11.53□□□□□ -0.56
CUX1-206ENST00000437600 FMNL2Q96PY5 1086 aa11.53□□□□□ -0.56
CUX1-206ENST00000437600 CCDC8Q9H0W5 538 aaPredicted RBP11.53□□□□□ -0.56
CUX1-206ENST00000437600 HYPKQ9NX55 129 aa11.53□□□□□ -0.56
CUX1-206ENST00000437600 NDUFB9Q9Y6M9 179 aa11.53□□□□□ -0.56
CUX1-206ENST00000437600 PRIM1P49642 420 aaKnown RBP11.52□□□□□ -0.56
CUX1-206ENST00000437600 TMX3Q96JJ7 454 aa11.52□□□□□ -0.56
CUX1-206ENST00000437600 ZDHHC9Q9Y397 364 aa11.52□□□□□ -0.56
CUX1-206ENST00000437600 ITGB4P16144 1822 aa11.52□□□□□ -0.56
CUX1-206ENST00000437600 DDX11L8A8MPP1 907 aa11.52□□□□□ -0.57
CUX1-206ENST00000437600 IGKV5-2P06315 115 aa11.52□□□□□ -0.57
CUX1-206ENST00000437600 FAM43AQ8N2R8 423 aa11.52□□□□□ -0.57
Retrieved 100 of 20,778 RNA–protein pairs in 22.4 ms