RNA–Protein interactions for RNA: ENST00000435891.5

CLSTN1-203, Transcript of calsyntenin 1, humanhuman

TSL 2

Gene CLSTN1, Length 3,829 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLSTN1-203ENST00000435891 C9orf78Q9NZ63 289 aaPredicted RBP12.59□□□□□ -0.39
CLSTN1-203ENST00000435891 AIMP1Q12904 312 aaKnown RBP12.59□□□□□ -0.39
CLSTN1-203ENST00000435891 INTS4Q96HW7 963 aaKnown RBP12.59□□□□□ -0.39
CLSTN1-203ENST00000435891 PPP1R9BQ96SB3 815 aa12.59□□□□□ -0.39
CLSTN1-203ENST00000435891 ANP32BQ92688 251 aaKnown RBP12.59□□□□□ -0.39
CLSTN1-203ENST00000435891 SLC39A6Q13433 755 aa12.58□□□□□ -0.4
CLSTN1-203ENST00000435891 CNTROBQ8N137 903 aa12.58□□□□□ -0.4
CLSTN1-203ENST00000435891 PTH1RQ03431 593 aa12.58□□□□□ -0.4
CLSTN1-203ENST00000435891 CCDC173Q0VFZ6 552 aa12.58□□□□□ -0.4
CLSTN1-203ENST00000435891 AMOTQ4VCS5 1084 aa12.58□□□□□ -0.4
CLSTN1-203ENST00000435891 KSR2Q6VAB6 950 aa12.58□□□□□ -0.4
CLSTN1-203ENST00000435891 HEG1Q9ULI3 1381 aa12.58□□□□□ -0.4
CLSTN1-203ENST00000435891 GADD45BO75293 160 aaPredicted RBP12.58□□□□□ -0.4
CLSTN1-203ENST00000435891 ZC3H6P61129 1189 aaKnown RBP12.58□□□□□ -0.4
CLSTN1-203ENST00000435891 MTX1Q13505 466 aa12.58□□□□□ -0.4
CLSTN1-203ENST00000435891 TTC14Q96N46 770 aa12.58□□□□□ -0.4
CLSTN1-203ENST00000435891 PDIA4P13667 645 aaKnown RBP12.57□□□□□ -0.4
CLSTN1-203ENST00000435891 COL9A3Q14050 684 aaPredicted RBP12.57□□□□□ -0.4
CLSTN1-203ENST00000435891 DDX54Q8TDD1 881 aaKnown RBP12.57□□□□□ -0.4
CLSTN1-203ENST00000435891 SUCLG2Q96I99 432 aa12.57□□□□□ -0.4
CLSTN1-203ENST00000435891 AK2P54819 239 aa12.57□□□□□ -0.4
CLSTN1-203ENST00000435891 PDIA6Q15084 440 aa12.57□□□□□ -0.4
CLSTN1-203ENST00000435891 RUFY3Q7L099 469 aa12.57□□□□□ -0.4
CLSTN1-203ENST00000435891 NCAPD2Q15021 1401 aa12.57□□□□□ -0.4
CLSTN1-203ENST00000435891 PHRF1Q9P1Y6 1649 aaKnown RBP12.56□□□□□ -0.4
CLSTN1-203ENST00000435891 LARGE1O95461 756 aa12.56□□□□□ -0.4
CLSTN1-203ENST00000435891 MSNP26038 577 aaKnown RBP12.56□□□□□ -0.4
CLSTN1-203ENST00000435891 ADCK5Q3MIX3 580 aa12.56□□□□□ -0.4
CLSTN1-203ENST00000435891 KLHDC4Q8TBB5 520 aa12.56□□□□□ -0.4
CLSTN1-203ENST00000435891 RPAP1Q9BWH6 1393 aaPredicted RBP12.56□□□□□ -0.4
CLSTN1-203ENST00000435891 USP42Q9H9J4 1324 aaKnown RBP12.56□□□□□ -0.4
CLSTN1-203ENST00000435891 CLASRPQ8N2M8 674 aaKnown RBP12.56□□□□□ -0.4
CLSTN1-203ENST00000435891 DDX17Q92841 729 aaKnown RBP12.56□□□□□ -0.4
CLSTN1-203ENST00000435891 TCHHQ07283 1943 aa12.56□□□□□ -0.4
CLSTN1-203ENST00000435891 GLRX3O76003 335 aaKnown RBP12.56□□□□□ -0.4
CLSTN1-203ENST00000435891 SASH1O94885 1247 aa12.56□□□□□ -0.4
CLSTN1-203ENST00000435891 BICC1Q9H694 974 aaKnown RBP12.56□□□□□ -0.4
CLSTN1-203ENST00000435891 R3HCC1Q9Y3T6 440 aaKnown RBP12.56□□□□□ -0.4
CLSTN1-203ENST00000435891 PIP4K2AP48426 406 aaPredicted RBP12.55□□□□□ -0.4
CLSTN1-203ENST00000435891 TPRNQ4KMQ1 711 aa12.55□□□□□ -0.4
CLSTN1-203ENST00000435891 HSP90AB4PQ58FF6 505 aa12.55□□□□□ -0.4
CLSTN1-203ENST00000435891 TLR7Q9NYK1 1049 aaKnown RBP12.55□□□□□ -0.4
CLSTN1-203ENST00000435891 ALDH1L1O75891 902 aa12.55□□□□□ -0.4
CLSTN1-203ENST00000435891 KRT28Q7Z3Y7 464 aa12.55□□□□□ -0.4
CLSTN1-203ENST00000435891 AACSQ86V21 672 aa12.55□□□□□ -0.4
CLSTN1-203ENST00000435891 RNF214Q8ND24 703 aa12.55□□□□□ -0.4
CLSTN1-203ENST00000435891 SIL1Q9H173 461 aa12.55□□□□□ -0.4
CLSTN1-203ENST00000435891 ECHDC1Q9NTX5 307 aa12.55□□□□□ -0.4
CLSTN1-203ENST00000435891 TTC41PQ6P2S7 1318 aa12.55□□□□□ -0.4
CLSTN1-203ENST00000435891 IGKV5-2P06315 115 aa12.55□□□□□ -0.4
CLSTN1-203ENST00000435891 LRSAM1Q6UWE0 723 aa12.55□□□□□ -0.4
CLSTN1-203ENST00000435891 EAF2Q96CJ1 260 aaPredicted RBP12.55□□□□□ -0.4
CLSTN1-203ENST00000435891 CCDC8Q9H0W5 538 aaPredicted RBP12.55□□□□□ -0.4
CLSTN1-203ENST00000435891 SLIT3O75094 1523 aa12.55□□□□□ -0.4
CLSTN1-203ENST00000435891 GRM8O00222 908 aa12.54□□□□□ -0.4
CLSTN1-203ENST00000435891 CASTP20810 708 aaKnown RBP12.54□□□□□ -0.4
CLSTN1-203ENST00000435891 JARID2Q92833 1246 aaPredicted RBP12.54□□□□□ -0.4
CLSTN1-203ENST00000435891 DIAPH3Q9NSV4 1193 aa12.54□□□□□ -0.4
CLSTN1-203ENST00000435891 CRYBG1Q9Y4K1 1723 aa12.54□□□□□ -0.4
CLSTN1-203ENST00000435891 RGPD5Q99666 1765 aa12.54□□□□□ -0.4
CLSTN1-203ENST00000435891 EPB41L2O43491 1005 aaKnown RBP12.54□□□□□ -0.4
CLSTN1-203ENST00000435891 MYL6BP14649 208 aa12.54□□□□□ -0.4
CLSTN1-203ENST00000435891 PRPF40BQ6NWY9 871 aaKnown RBP12.54□□□□□ -0.4
CLSTN1-203ENST00000435891 ERBB3P21860 1342 aa12.54□□□□□ -0.4
CLSTN1-203ENST00000435891 IFIT2P09913 472 aaKnown RBP12.54□□□□□ -0.4
CLSTN1-203ENST00000435891 USP48Q86UV5 1035 aa12.54□□□□□ -0.4
CLSTN1-203ENST00000435891 FAM227BQ96M60 508 aa12.54□□□□□ -0.4
CLSTN1-203ENST00000435891 LINS1Q8NG48 757 aa12.53□□□□□ -0.4
CLSTN1-203ENST00000435891 EPHA10Q5JZY3 1008 aa12.53□□□□□ -0.4
CLSTN1-203ENST00000435891 DDX21Q9NR30 783 aaKnown RBP eCLIP12.53□□□□□ -0.4
CLSTN1-203ENST00000435891 PRDM4Q9UKN5 801 aa12.53□□□□□ -0.4
CLSTN1-203ENST00000435891 NFATC2IPQ8NCF5 419 aa12.53□□□□□ -0.4
CLSTN1-203ENST00000435891 HYPKQ9NX55 129 aa12.53□□□□□ -0.4
CLSTN1-203ENST00000435891 NPHP4O75161 1426 aaPredicted RBP12.53□□□□□ -0.4
CLSTN1-203ENST00000435891 ZNF790Q6PG37 636 aa12.52□□□□□ -0.4
CLSTN1-203ENST00000435891 PDLIM2Q96JY6 352 aa12.52□□□□□ -0.4
CLSTN1-203ENST00000435891 CHMP4AQ9BY43 222 aa12.52□□□□□ -0.4
CLSTN1-203ENST00000435891 MBD3O95983 291 aa12.52□□□□□ -0.41
CLSTN1-203ENST00000435891 SYT1P21579 422 aa12.52□□□□□ -0.41
CLSTN1-203ENST00000435891 LIMCH1Q9UPQ0 1083 aa12.52□□□□□ -0.41
CLSTN1-203ENST00000435891 CNPY2Q9Y2B0 182 aa12.52□□□□□ -0.41
CLSTN1-203ENST00000435891 WDR33Q9C0J8 1336 aaKnown RBP12.52□□□□□ -0.41
CLSTN1-203ENST00000435891 ST3GAL1Q11201 340 aa12.52□□□□□ -0.41
CLSTN1-203ENST00000435891 AEBP2Q6ZN18 517 aaPredicted RBP12.52□□□□□ -0.41
CLSTN1-203ENST00000435891 JAKMIP1Q96N16 626 aaKnown RBP12.52□□□□□ -0.41
CLSTN1-203ENST00000435891 KDM6AO15550 1401 aaPredicted RBP12.51□□□□□ -0.41
CLSTN1-203ENST00000435891 NLRP2Q9NX02 1062 aa12.51□□□□□ -0.41
CLSTN1-203ENST00000435891 TAF6LQ9Y6J9 622 aa12.51□□□□□ -0.41
CLSTN1-203ENST00000435891 SIPA1L3O60292 1781 aaPredicted RBP12.51□□□□□ -0.41
CLSTN1-203ENST00000435891 RIC3Q7Z5B4 369 aa12.51□□□□□ -0.41
CLSTN1-203ENST00000435891 ZSCAN30Q86W11 494 aa12.51□□□□□ -0.41
CLSTN1-203ENST00000435891 PROSER2Q86WR7 435 aaPredicted RBP12.51□□□□□ -0.41
CLSTN1-203ENST00000435891 CCDC83Q8IWF9 413 aa12.51□□□□□ -0.41
CLSTN1-203ENST00000435891 CABLES1Q8TDN4 633 aa12.51□□□□□ -0.41
CLSTN1-203ENST00000435891 EDC3Q96F86 508 aaKnown RBP12.51□□□□□ -0.41
CLSTN1-203ENST00000435891 BOLA2Q9H3K6 86 aa12.51□□□□□ -0.41
CLSTN1-203ENST00000435891 XAGE3Q8WTP9 111 aa12.51□□□□□ -0.41
CLSTN1-203ENST00000435891 ZNF496Q96IT1 587 aaPredicted RBP12.51□□□□□ -0.41
CLSTN1-203ENST00000435891 EIF2AK3Q9NZJ5 1116 aaKnown RBP12.51□□□□□ -0.41
CLSTN1-203ENST00000435891 ZNF142P52746 1687 aaPredicted RBP12.51□□□□□ -0.41
Retrieved 100 of 20,778 RNA–protein pairs in 40.6 ms