RNA–Protein interactions for RNA: ENST00000433888.5

PTPN4-205, Transcript of protein tyrosine phosphatase, non-receptor type 4, humanhuman

TSL 3

Gene PTPN4, Length 954 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPN4-205ENST00000433888 CHSY3Q70JA7 882 aa8.85□□□□□ -0.99
PTPN4-205ENST00000433888 GPC6Q9Y625 555 aaPredicted RBP8.85□□□□□ -0.99
PTPN4-205ENST00000433888 GJA3Q9Y6H8 435 aa8.85□□□□□ -0.99
PTPN4-205ENST00000433888 GNB5O14775 395 aa8.84□□□□□ -0.99
PTPN4-205ENST00000433888 ADAM23O75077 832 aa8.84□□□□□ -0.99
PTPN4-205ENST00000433888 ATP1A2P50993 1020 aa8.84□□□□□ -0.99
PTPN4-205ENST00000433888 PCBP4P57723 403 aaKnown RBP8.84□□□□□ -0.99
PTPN4-205ENST00000433888 LRRC69Q6ZNQ3 347 aa8.84□□□□□ -0.99
PTPN4-205ENST00000433888 LARGE2Q8N3Y3 721 aa8.84□□□□□ -0.99
PTPN4-205ENST00000433888 MKRN1Q9UHC7 482 aaKnown RBP8.84□□□□□ -0.99
PTPN4-205ENST00000433888 SERTM1A2A2V5 107 aa8.83□□□□□ -1
PTPN4-205ENST00000433888 GRIN2CQ14957 1233 aa8.83□□□□□ -1
PTPN4-205ENST00000433888 OGFOD1Q8N543 542 aa8.83□□□□□ -1
PTPN4-205ENST00000433888 TSPAN10Q9H1Z9 355 aaPredicted RBP8.83□□□□□ -1
PTPN4-205ENST00000433888 PALM3A6NDB9 673 aaPredicted RBP8.82□□□□□ -1
PTPN4-205ENST00000433888 HIRAP54198 1017 aaPredicted RBP8.82□□□□□ -1
PTPN4-205ENST00000433888 SIX5Q8N196 739 aa8.82□□□□□ -1
PTPN4-205ENST00000433888 CLUAP1Q96AJ1 413 aa8.82□□□□□ -1
PTPN4-205ENST00000433888 ZNF232Q9UNY5 417 aa8.82□□□□□ -1
PTPN4-205ENST00000433888 SFSWAPQ12872 951 aaKnown RBP8.81□□□□□ -1
PTPN4-205ENST00000433888 C1orf53Q5VUE5 145 aa8.81□□□□□ -1
PTPN4-205ENST00000433888 PRR12Q9ULL5 1215 aa8.81□□□□□ -1
PTPN4-205ENST00000433888 PIK3R2O00459 728 aa8.8□□□□□ -1
PTPN4-205ENST00000433888 C21orf2O43822 256 aa8.8□□□□□ -1
PTPN4-205ENST00000433888 PSMA6P60900 246 aaKnown RBP8.8□□□□□ -1
PTPN4-205ENST00000433888 SFI1A8K8P3 1242 aa8.79□□□□□ -1
PTPN4-205ENST00000433888 SYT9Q86SS6 491 aa8.79□□□□□ -1
PTPN4-205ENST00000433888 TSEN2Q8NCE0 465 aaKnown RBP8.79□□□□□ -1
PTPN4-205ENST00000433888 TRIM11Q96F44 468 aa8.79□□□□□ -1
PTPN4-205ENST00000433888 TFIP11Q9UBB9 837 aaKnown RBP8.79□□□□□ -1
PTPN4-205ENST00000433888 HCN4Q9Y3Q4 1203 aa8.79□□□□□ -1
PTPN4-205ENST00000433888 ADARB2-AS1A8MUL3 147 aa8.78□□□□□ -1
PTPN4-205ENST00000433888 SIN3BO75182 1162 aa8.78□□□□□ -1
PTPN4-205ENST00000433888 BAG6P46379 1132 aa8.78□□□□□ -1
PTPN4-205ENST00000433888 TMEM132AQ24JP5 1023 aa8.78□□□□□ -1
PTPN4-205ENST00000433888 RHPN1Q8TCX5 695 aa8.78□□□□□ -1
PTPN4-205ENST00000433888 GLMNQ92990 594 aa8.78□□□□□ -1
PTPN4-205ENST00000433888 SLC30A3Q99726 388 aa8.78□□□□□ -1
PTPN4-205ENST00000433888 PHACTR1Q9C0D0 580 aa8.78□□□□□ -1
PTPN4-205ENST00000433888 ELOA3CA0A087WX78 387 aaPredicted RBP8.77□□□□□ -1.01
PTPN4-205ENST00000433888 ELOA3DA6NLF2 546 aaPredicted RBP8.77□□□□□ -1.01
PTPN4-205ENST00000433888 C1QTNF9BB2RNN3 333 aa8.77□□□□□ -1.01
PTPN4-205ENST00000433888 ELOA3BQ3SY89 546 aa8.77□□□□□ -1.01
PTPN4-205ENST00000433888 CD163Q86VB7 1156 aa8.77□□□□□ -1.01
PTPN4-205ENST00000433888 PROSER2Q86WR7 435 aaPredicted RBP8.77□□□□□ -1.01
PTPN4-205ENST00000433888 STAG2Q8N3U4 1231 aa8.77□□□□□ -1.01
PTPN4-205ENST00000433888 ZNF280CQ8ND82 737 aa8.77□□□□□ -1.01
PTPN4-205ENST00000433888 ELOA3Q8NG57 546 aa8.77□□□□□ -1.01
PTPN4-205ENST00000433888 ZNF594Q96JF6 807 aaPredicted RBP8.77□□□□□ -1.01
PTPN4-205ENST00000433888 MAFBQ9Y5Q3 323 aaPredicted RBP8.77□□□□□ -1.01
PTPN4-205ENST00000433888 ATAD2Q6PL18 1390 aa8.76□□□□□ -1.01
PTPN4-205ENST00000433888 KCNQ4P56696 695 aa8.76□□□□□ -1.01
PTPN4-205ENST00000433888 TNFRSF25Q93038 417 aa8.76□□□□□ -1.01
PTPN4-205ENST00000433888 HSH2DQ96JZ2 352 aa8.76□□□□□ -1.01
PTPN4-205ENST00000433888 NEUROD4Q9HD90 331 aa8.76□□□□□ -1.01
PTPN4-205ENST00000433888 NOP53Q9NZM5 478 aaKnown RBP8.76□□□□□ -1.01
PTPN4-205ENST00000433888 STARD13Q9Y3M8 1113 aa8.76□□□□□ -1.01
PTPN4-205ENST00000433888 CHRNA4P43681 627 aa8.75□□□□□ -1.01
PTPN4-205ENST00000433888 COL9A3Q14050 684 aaPredicted RBP8.75□□□□□ -1.01
PTPN4-205ENST00000433888 SUSD3Q96L08 255 aa8.75□□□□□ -1.01
PTPN4-205ENST00000433888 C2orf49Q9BVC5 232 aaPredicted RBP8.75□□□□□ -1.01
PTPN4-205ENST00000433888 ANKIB1Q9P2G1 1089 aa8.75□□□□□ -1.01
PTPN4-205ENST00000433888 PPP1R12BO60237 982 aaPredicted RBP8.74□□□□□ -1.01
PTPN4-205ENST00000433888 RASA1P20936 1047 aa8.74□□□□□ -1.01
PTPN4-205ENST00000433888 KANK4Q5T7N3 995 aaPredicted RBP8.74□□□□□ -1.01
PTPN4-205ENST00000433888 PLVAPQ9BX97 442 aa8.74□□□□□ -1.01
PTPN4-205ENST00000433888 TYRO3Q06418 890 aa8.73□□□□□ -1.01
PTPN4-205ENST00000433888 ALDH16A1Q8IZ83 802 aa8.73□□□□□ -1.01
PTPN4-205ENST00000433888 GAS2L2Q8NHY3 880 aa8.73□□□□□ -1.01
PTPN4-205ENST00000433888 BRD7Q9NPI1 651 aa8.73□□□□□ -1.01
PTPN4-205ENST00000433888 CHMP3Q9Y3E7 222 aa8.73□□□□□ -1.01
PTPN4-205ENST00000433888 A6NJR5 290 aa8.72□□□□□ -1.01
PTPN4-205ENST00000433888 K7ELQ4 463 aaPredicted RBP8.72□□□□□ -1.01
PTPN4-205ENST00000433888 ALAS2P22557 587 aa8.72□□□□□ -1.01
PTPN4-205ENST00000433888 SEC13P55735 322 aa8.72□□□□□ -1.01
PTPN4-205ENST00000433888 SPEM2Q0P670 501 aa8.72□□□□□ -1.01
PTPN4-205ENST00000433888 CEP63Q96MT8 703 aa8.72□□□□□ -1.01
PTPN4-205ENST00000433888 PPP1R12CQ9BZL4 782 aa8.72□□□□□ -1.01
PTPN4-205ENST00000433888 KCNH4Q9UQ05 1017 aa8.72□□□□□ -1.01
PTPN4-205ENST00000433888 FURINP09958 794 aa8.71□□□□□ -1.02
PTPN4-205ENST00000433888 PTK7Q13308 1070 aa8.71□□□□□ -1.02
PTPN4-205ENST00000433888 SCG3Q8WXD2 468 aaKnown RBP8.71□□□□□ -1.02
PTPN4-205ENST00000433888 PRDM6Q9NQX0 595 aa8.71□□□□□ -1.02
PTPN4-205ENST00000433888 CRTC2Q53ET0 693 aaPredicted RBP8.7□□□□□ -1.02
PTPN4-205ENST00000433888 MICALL1Q8N3F8 863 aa8.7□□□□□ -1.02
PTPN4-205ENST00000433888 RBM19Q9Y4C8 960 aaKnown RBP8.7□□□□□ -1.02
PTPN4-205ENST00000433888 C20orf204Q6ZNR8 217 aa8.69□□□□□ -1.02
PTPN4-205ENST00000433888 C8orf86Q6ZUL3 223 aa8.69□□□□□ -1.02
PTPN4-205ENST00000433888 RAB44Q7Z6P3 723 aaPredicted RBP8.69□□□□□ -1.02
PTPN4-205ENST00000433888 M0R082 166 aa8.68□□□□□ -1.02
PTPN4-205ENST00000433888 ALBP02768 609 aa8.68□□□□□ -1.02
PTPN4-205ENST00000433888 SPATA31C1P0DKV0 1188 aa8.68□□□□□ -1.02
PTPN4-205ENST00000433888 DPYDQ12882 1025 aa8.68□□□□□ -1.02
PTPN4-205ENST00000433888 BTLAQ7Z6A9 289 aa8.68□□□□□ -1.02
PTPN4-205ENST00000433888 ZNF417Q8TAU3 575 aa8.68□□□□□ -1.02
PTPN4-205ENST00000433888 ZNF587Q96SQ5 575 aaPredicted RBP8.68□□□□□ -1.02
PTPN4-205ENST00000433888 DMGDHQ9UI17 866 aaKnown RBP8.68□□□□□ -1.02
PTPN4-205ENST00000433888 ADH7P40394 386 aa8.67□□□□□ -1.02
PTPN4-205ENST00000433888 LARP1Q6PKG0 1096 aaKnown RBP8.67□□□□□ -1.02
PTPN4-205ENST00000433888 CALR3Q96L12 384 aaKnown RBP8.67□□□□□ -1.02
Retrieved 100 of 20,778 RNA–protein pairs in 16.6 ms