RNA–Protein interactions for RNA: ENST00000428776.1

HMGB3P4-201, Transcript of high mobility group box 3 pseudogene 4, humanhuman

BASIC

Gene HMGB3P4, Length 514 nt, Biotype processed pseudogene.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB3P4-201ENST00000428776 IGHDP01880 384 aa15.98■□□□□ 0.15
HMGB3P4-201ENST00000428776 IL6STP40189 918 aaPredicted RBP15.98■□□□□ 0.15
HMGB3P4-201ENST00000428776 HDAC1Q13547 482 aaPredicted RBP15.98■□□□□ 0.15
HMGB3P4-201ENST00000428776 ITPK1Q13572 414 aa15.98■□□□□ 0.15
HMGB3P4-201ENST00000428776 MEIS3Q99687 375 aa15.98■□□□□ 0.15
HMGB3P4-201ENST00000428776 USP44Q9H0E7 712 aa15.98■□□□□ 0.15
HMGB3P4-201ENST00000428776 CCDC87Q9NVE4 849 aa15.98■□□□□ 0.15
HMGB3P4-201ENST00000428776 POTEAQ6S8J7 498 aa15.97■□□□□ 0.15
HMGB3P4-201ENST00000428776 GNAI2P04899 355 aa15.96■□□□□ 0.15
HMGB3P4-201ENST00000428776 CRKLP46109 303 aaKnown RBP15.96■□□□□ 0.15
HMGB3P4-201ENST00000428776 INTS5Q6P9B9 1019 aaKnown RBP15.96■□□□□ 0.15
HMGB3P4-201ENST00000428776 KIF6Q6ZMV9 814 aa15.96■□□□□ 0.15
HMGB3P4-201ENST00000428776 TTLL7Q6ZT98 887 aa15.96■□□□□ 0.15
HMGB3P4-201ENST00000428776 NPM2Q86SE8 214 aaKnown RBP15.96■□□□□ 0.15
HMGB3P4-201ENST00000428776 RPAP2Q8IXW5 612 aaPredicted RBP15.96■□□□□ 0.15
HMGB3P4-201ENST00000428776 PELP1Q8IZL8 1130 aaKnown RBP15.96■□□□□ 0.15
HMGB3P4-201ENST00000428776 HDAC5Q9UQL6 1122 aa15.96■□□□□ 0.15
HMGB3P4-201ENST00000428776 ZBTB1Q9Y2K1 713 aa15.96■□□□□ 0.15
HMGB3P4-201ENST00000428776 MYD88Q99836 296 aa15.95■□□□□ 0.14
HMGB3P4-201ENST00000428776 C1orf115Q9H7X2 142 aa15.95■□□□□ 0.14
HMGB3P4-201ENST00000428776 BCORQ6W2J9 1755 aa15.95■□□□□ 0.14
HMGB3P4-201ENST00000428776 IGKV5-2P06315 115 aa15.94■□□□□ 0.14
HMGB3P4-201ENST00000428776 UBTFL1P0CB47 393 aaPredicted RBP15.94■□□□□ 0.14
HMGB3P4-201ENST00000428776 EIF5P55010 431 aaKnown RBP15.94■□□□□ 0.14
HMGB3P4-201ENST00000428776 CWF19L2Q2TBE0 894 aaKnown RBP15.94■□□□□ 0.14
HMGB3P4-201ENST00000428776 RC3H1Q5TC82 1133 aaKnown RBP15.94■□□□□ 0.14
HMGB3P4-201ENST00000428776 ANKRD44Q8N8A2 993 aa15.94■□□□□ 0.14
HMGB3P4-201ENST00000428776 CCNL1Q9UK58 526 aaPredicted RBP15.94■□□□□ 0.14
HMGB3P4-201ENST00000428776 ZNF330Q9Y3S2 320 aaPredicted RBP15.94■□□□□ 0.14
HMGB3P4-201ENST00000428776 C4BP0C0L5 1744 aa15.94■□□□□ 0.14
HMGB3P4-201ENST00000428776 TNS1Q9HBL0 1735 aaKnown RBP15.94■□□□□ 0.14
HMGB3P4-201ENST00000428776 UTYO14607 1347 aa15.94■□□□□ 0.14
HMGB3P4-201ENST00000428776 CNTNAP4Q9C0A0 1308 aa15.94■□□□□ 0.14
HMGB3P4-201ENST00000428776 RGPD3A6NKT7 1758 aaPredicted RBP15.93■□□□□ 0.14
HMGB3P4-201ENST00000428776 RGPD4Q7Z3J3 1758 aa15.93■□□□□ 0.14
HMGB3P4-201ENST00000428776 NEURL1BA8MQ27 555 aa15.93■□□□□ 0.14
HMGB3P4-201ENST00000428776 TRIM37O94972 964 aa15.93■□□□□ 0.14
HMGB3P4-201ENST00000428776 HMGB2P26583 209 aaKnown RBP15.93■□□□□ 0.14
HMGB3P4-201ENST00000428776 LINC00116Q8NCU8 138 aa15.93■□□□□ 0.14
HMGB3P4-201ENST00000428776 ZBTB3Q9H5J0 574 aa15.93■□□□□ 0.14
HMGB3P4-201ENST00000428776 C9orf78Q9NZ63 289 aaPredicted RBP15.93■□□□□ 0.14
HMGB3P4-201ENST00000428776 MAP3K15Q6ZN16 1313 aa15.93■□□□□ 0.14
HMGB3P4-201ENST00000428776 ERVV-1B6SEH8 477 aa15.92■□□□□ 0.14
HMGB3P4-201ENST00000428776 GCKRQ14397 625 aa15.92■□□□□ 0.14
HMGB3P4-201ENST00000428776 CEP85Q6P2H3 762 aa15.92■□□□□ 0.14
HMGB3P4-201ENST00000428776 SIRT2Q8IXJ6 389 aa15.92■□□□□ 0.14
HMGB3P4-201ENST00000428776 GRM8O00222 908 aa15.91■□□□□ 0.14
HMGB3P4-201ENST00000428776 NBPF7P0C2Y1 421 aaPredicted RBP15.91■□□□□ 0.14
HMGB3P4-201ENST00000428776 TCIRG1Q13488 830 aa15.91■□□□□ 0.14
HMGB3P4-201ENST00000428776 GIGYF2Q6Y7W6 1299 aaKnown RBP15.91■□□□□ 0.14
HMGB3P4-201ENST00000428776 UBR3Q6ZT12 1888 aa15.91■□□□□ 0.14
HMGB3P4-201ENST00000428776 A0A087WZG4 1122 aa15.9■□□□□ 0.14
HMGB3P4-201ENST00000428776 HMMRO75330 724 aa15.9■□□□□ 0.14
HMGB3P4-201ENST00000428776 TRIM28Q13263 835 aaKnown RBP15.9■□□□□ 0.14
HMGB3P4-201ENST00000428776 HSP90AB3PQ58FF7 597 aa15.9■□□□□ 0.14
HMGB3P4-201ENST00000428776 DZIP3Q86Y13 1208 aaKnown RBP15.9■□□□□ 0.14
HMGB3P4-201ENST00000428776 SMC5Q8IY18 1101 aa15.9■□□□□ 0.14
HMGB3P4-201ENST00000428776 GCC1Q96CN9 775 aa15.9■□□□□ 0.14
HMGB3P4-201ENST00000428776 ARXQ96QS3 562 aa15.9■□□□□ 0.14
HMGB3P4-201ENST00000428776 LRRFIP2Q9Y608 721 aaKnown RBP15.9■□□□□ 0.14
HMGB3P4-201ENST00000428776 ATP5J2-PTCD1G3V325 749 aa15.89■□□□□ 0.13
HMGB3P4-201ENST00000428776 KCNQ4P56696 695 aa15.89■□□□□ 0.13
HMGB3P4-201ENST00000428776 ATP8B2P98198 1209 aa15.89■□□□□ 0.13
HMGB3P4-201ENST00000428776 SLC27A3Q5K4L6 730 aa15.89■□□□□ 0.13
HMGB3P4-201ENST00000428776 CCDC191Q8NCU4 936 aa15.89■□□□□ 0.13
HMGB3P4-201ENST00000428776 ISCA1Q9BUE6 129 aa15.89■□□□□ 0.13
HMGB3P4-201ENST00000428776 CWC25Q9NXE8 425 aaPredicted RBP15.89■□□□□ 0.13
HMGB3P4-201ENST00000428776 MYH3P11055 1940 aa15.89■□□□□ 0.13
HMGB3P4-201ENST00000428776 EP400Q96L91 3159 aa15.89■□□□□ 0.13
HMGB3P4-201ENST00000428776 SCN7AQ01118 1682 aa15.89■□□□□ 0.13
HMGB3P4-201ENST00000428776 COL15A1P39059 1388 aa15.88■□□□□ 0.13
HMGB3P4-201ENST00000428776 C4AP0C0L4 1744 aa15.88■□□□□ 0.13
HMGB3P4-201ENST00000428776 PLSCR1O15162 318 aa15.88■□□□□ 0.13
HMGB3P4-201ENST00000428776 RPS6KA4O75676 772 aa15.88■□□□□ 0.13
HMGB3P4-201ENST00000428776 TBC1D2BQ9UPU7 963 aa15.88■□□□□ 0.13
HMGB3P4-201ENST00000428776 RGL2O15211 777 aa15.87■□□□□ 0.13
HMGB3P4-201ENST00000428776 DCTPP1Q9H773 170 aa15.87■□□□□ 0.13
HMGB3P4-201ENST00000428776 H7C1W4 665 aa15.86■□□□□ 0.13
HMGB3P4-201ENST00000428776 MTX1Q13505 466 aa15.86■□□□□ 0.13
HMGB3P4-201ENST00000428776 HLFQ16534 295 aa15.86■□□□□ 0.13
HMGB3P4-201ENST00000428776 CAMTA2O94983 1202 aa15.85■□□□□ 0.13
HMGB3P4-201ENST00000428776 SSH3Q8TE77 659 aa15.85■□□□□ 0.13
HMGB3P4-201ENST00000428776 LRRC4BQ9NT99 713 aa15.85■□□□□ 0.13
HMGB3P4-201ENST00000428776 RTCBQ9Y3I0 505 aaKnown RBP15.85■□□□□ 0.13
HMGB3P4-201ENST00000428776 GNPATO15228 680 aa15.84■□□□□ 0.13
HMGB3P4-201ENST00000428776 APBA3O96018 575 aa15.84■□□□□ 0.13
HMGB3P4-201ENST00000428776 CASP7P55210 303 aa15.84■□□□□ 0.13
HMGB3P4-201ENST00000428776 TXNRD1Q16881 649 aa15.84■□□□□ 0.13
HMGB3P4-201ENST00000428776 CLEC4GQ6UXB4 293 aa15.84■□□□□ 0.13
HMGB3P4-201ENST00000428776 UBE3BQ7Z3V4 1068 aa15.84■□□□□ 0.13
HMGB3P4-201ENST00000428776 PPP1R42Q7Z4L9 355 aa15.84■□□□□ 0.13
HMGB3P4-201ENST00000428776 ZNF34Q8IZ26 560 aa15.84■□□□□ 0.13
HMGB3P4-201ENST00000428776 SUCLG2Q96I99 432 aa15.84■□□□□ 0.13
HMGB3P4-201ENST00000428776 PDZRN3Q9UPQ7 1066 aa15.84■□□□□ 0.13
HMGB3P4-201ENST00000428776 ZNF652Q9Y2D9 606 aa15.84■□□□□ 0.13
HMGB3P4-201ENST00000428776 PNMA6EA0A0J9YXQ4 647 aa15.83■□□□□ 0.12
HMGB3P4-201ENST00000428776 NUCB1Q02818 461 aa15.83■□□□□ 0.12
HMGB3P4-201ENST00000428776 POLA2Q14181 598 aa15.83■□□□□ 0.12
HMGB3P4-201ENST00000428776 KAZALD1Q96I82 304 aa15.83■□□□□ 0.12
HMGB3P4-201ENST00000428776 AK7Q96M32 723 aa15.83■□□□□ 0.12
Retrieved 100 of 20,778 RNA–protein pairs in 21.8 ms