RNA–Protein interactions for RNA: ENST00000428726.6

CD44-208, Transcript of CD44 molecule (Indian blood group), humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene CD44, Length 3,046 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-208ENST00000428726 GPTP24298 496 aa10.2□□□□□ -0.78
CD44-208ENST00000428726 CCDC129Q6ZRS4 1044 aa10.2□□□□□ -0.78
CD44-208ENST00000428726 DBF4Q9UBU7 674 aaPredicted RBP10.2□□□□□ -0.78
CD44-208ENST00000428726 ERBB3P21860 1342 aa10.19□□□□□ -0.78
CD44-208ENST00000428726 IFIT2P09913 472 aaKnown RBP10.19□□□□□ -0.78
CD44-208ENST00000428726 NECAB1Q8N987 351 aa10.19□□□□□ -0.78
CD44-208ENST00000428726 SNX21Q969T3 373 aa10.19□□□□□ -0.78
CD44-208ENST00000428726 SEC62Q99442 399 aaKnown RBP10.19□□□□□ -0.78
CD44-208ENST00000428726 ESYT1Q9BSJ8 1104 aa10.19□□□□□ -0.78
CD44-208ENST00000428726 NUTM2BA6NNL0 878 aaPredicted RBP10.19□□□□□ -0.78
CD44-208ENST00000428726 NUTM2EB1AL46 878 aaPredicted RBP10.19□□□□□ -0.78
CD44-208ENST00000428726 IGKV5-2P06315 115 aa10.19□□□□□ -0.78
CD44-208ENST00000428726 PTH1RQ03431 593 aa10.19□□□□□ -0.78
CD44-208ENST00000428726 LARP1Q6PKG0 1096 aaKnown RBP10.19□□□□□ -0.78
CD44-208ENST00000428726 NUTM2AQ8IVF1 878 aaPredicted RBP10.19□□□□□ -0.78
CD44-208ENST00000428726 STK11IPQ8N1F8 1099 aa10.19□□□□□ -0.78
CD44-208ENST00000428726 SNRKQ9NRH2 765 aa10.19□□□□□ -0.78
CD44-208ENST00000428726 NPHP4O75161 1426 aaPredicted RBP10.19□□□□□ -0.78
CD44-208ENST00000428726 ADCY9O60503 1353 aa10.19□□□□□ -0.78
CD44-208ENST00000428726 PRPF40BQ6NWY9 871 aaKnown RBP10.18□□□□□ -0.78
CD44-208ENST00000428726 ADGRL3Q9HAR2 1447 aa10.18□□□□□ -0.78
CD44-208ENST00000428726 FAM173BQ6P4H8 233 aa10.18□□□□□ -0.78
CD44-208ENST00000428726 EAF2Q96CJ1 260 aaPredicted RBP10.18□□□□□ -0.78
CD44-208ENST00000428726 KAZALD1Q96I82 304 aa10.18□□□□□ -0.78
CD44-208ENST00000428726 LTN1O94822 1766 aa10.18□□□□□ -0.78
CD44-208ENST00000428726 TIMM10P62072 90 aa10.17□□□□□ -0.78
CD44-208ENST00000428726 ADCK5Q3MIX3 580 aa10.17□□□□□ -0.78
CD44-208ENST00000428726 RAB11FIP4Q86YS3 637 aa10.17□□□□□ -0.78
CD44-208ENST00000428726 TMX3Q96JJ7 454 aa10.17□□□□□ -0.78
CD44-208ENST00000428726 CACNA1FO60840 1977 aa10.17□□□□□ -0.78
CD44-208ENST00000428726 A0A087WZG4 1122 aa10.17□□□□□ -0.78
CD44-208ENST00000428726 FERMT3Q86UX7 667 aa10.17□□□□□ -0.78
CD44-208ENST00000428726 RGPD2P0DJD1 1756 aa10.17□□□□□ -0.78
CD44-208ENST00000428726 SNAP23O00161 211 aa10.17□□□□□ -0.78
CD44-208ENST00000428726 FAM182BQ5T319 152 aa10.17□□□□□ -0.78
CD44-208ENST00000428726 DDX46Q7L014 1031 aaKnown RBP10.17□□□□□ -0.78
CD44-208ENST00000428726 CLASRPQ8N2M8 674 aaKnown RBP10.17□□□□□ -0.78
CD44-208ENST00000428726 DIAPH3Q9NSV4 1193 aa10.17□□□□□ -0.78
CD44-208ENST00000428726 REC8O95072 547 aa10.16□□□□□ -0.78
CD44-208ENST00000428726 PHKG2P15735 406 aa10.16□□□□□ -0.78
CD44-208ENST00000428726 G3BP1Q13283 466 aaKnown RBP eCLIP10.16□□□□□ -0.78
CD44-208ENST00000428726 KSR2Q6VAB6 950 aa10.16□□□□□ -0.78
CD44-208ENST00000428726 ACSBG1Q96GR2 724 aa10.16□□□□□ -0.78
CD44-208ENST00000428726 SASH1O94885 1247 aa10.16□□□□□ -0.78
CD44-208ENST00000428726 BAG4O95429 457 aaKnown RBP10.16□□□□□ -0.78
CD44-208ENST00000428726 LARGE1O95461 756 aa10.16□□□□□ -0.78
CD44-208ENST00000428726 PIP4K2BP78356 416 aa10.16□□□□□ -0.78
CD44-208ENST00000428726 PLCB2Q00722 1185 aa10.16□□□□□ -0.78
CD44-208ENST00000428726 PDIA6Q15084 440 aa10.16□□□□□ -0.78
CD44-208ENST00000428726 CHST3Q7LGC8 479 aa10.16□□□□□ -0.78
CD44-208ENST00000428726 FAM208AQ9UK61 1670 aaKnown RBP10.16□□□□□ -0.78
CD44-208ENST00000428726 NFAT5O94916 1531 aa10.16□□□□□ -0.78
CD44-208ENST00000428726 A0A0G2JLW4 131 aa10.15□□□□□ -0.78
CD44-208ENST00000428726 GRM8O00222 908 aa10.15□□□□□ -0.78
CD44-208ENST00000428726 ST18O60284 1047 aa10.15□□□□□ -0.78
CD44-208ENST00000428726 CASTP20810 708 aaKnown RBP10.15□□□□□ -0.78
CD44-208ENST00000428726 ANKRD13DQ6ZTN6 518 aa10.15□□□□□ -0.78
CD44-208ENST00000428726 CHMP4CQ96CF2 233 aa10.15□□□□□ -0.78
CD44-208ENST00000428726 NPHP3Q7Z494 1330 aa10.15□□□□□ -0.78
CD44-208ENST00000428726 LMBR1LQ6UX01 489 aa10.15□□□□□ -0.78
CD44-208ENST00000428726 FAM43AQ8N2R8 423 aa10.15□□□□□ -0.78
CD44-208ENST00000428726 SSH3Q8TE77 659 aa10.15□□□□□ -0.78
CD44-208ENST00000428726 SLC52A2Q9HAB3 445 aa10.15□□□□□ -0.78
CD44-208ENST00000428726 ASAP1Q9ULH1 1129 aa10.15□□□□□ -0.78
CD44-208ENST00000428726 NCOA3Q9Y6Q9 1424 aa10.15□□□□□ -0.78
CD44-208ENST00000428726 ADAMTSL3P82987 1691 aa10.15□□□□□ -0.78
CD44-208ENST00000428726 IBTKQ9P2D0 1353 aaPredicted RBP10.15□□□□□ -0.79
CD44-208ENST00000428726 TFCP2Q12800 502 aa10.15□□□□□ -0.79
CD44-208ENST00000428726 BRINP3Q76B58 766 aa10.15□□□□□ -0.79
CD44-208ENST00000428726 FSD1Q9BTV5 496 aa10.15□□□□□ -0.79
CD44-208ENST00000428726 CHMP4AQ9BY43 222 aa10.15□□□□□ -0.79
CD44-208ENST00000428726 ZDHHC9Q9Y397 364 aa10.15□□□□□ -0.79
CD44-208ENST00000428726 RABEP1Q15276 862 aa10.14□□□□□ -0.79
CD44-208ENST00000428726 KIAA1211Q6ZU35 1233 aa10.14□□□□□ -0.79
CD44-208ENST00000428726 CCDC83Q8IWF9 413 aa10.14□□□□□ -0.79
CD44-208ENST00000428726 CCDC24Q8N4L8 307 aa10.14□□□□□ -0.79
CD44-208ENST00000428726 PI4K2BQ8TCG2 481 aa10.14□□□□□ -0.79
CD44-208ENST00000428726 KIF1BPQ96EK5 621 aa10.14□□□□□ -0.79
CD44-208ENST00000428726 FAM89AQ96GI7 184 aa10.14□□□□□ -0.79
CD44-208ENST00000428726 JAKMIP1Q96N16 626 aaKnown RBP10.14□□□□□ -0.79
CD44-208ENST00000428726 PUS3Q9BZE2 481 aaKnown RBP10.14□□□□□ -0.79
CD44-208ENST00000428726 PHRF1Q9P1Y6 1649 aaKnown RBP10.14□□□□□ -0.79
CD44-208ENST00000428726 CEMIPQ8WUJ3 1361 aa10.14□□□□□ -0.79
CD44-208ENST00000428726 AMOTQ4VCS5 1084 aa10.14□□□□□ -0.79
CD44-208ENST00000428726 IFNL2Q8IZJ0 200 aa10.14□□□□□ -0.79
CD44-208ENST00000428726 NEXNQ0ZGT2 675 aa10.13□□□□□ -0.79
CD44-208ENST00000428726 RAB3GAP1Q15042 981 aa10.13□□□□□ -0.79
CD44-208ENST00000428726 PI16Q6UXB8 463 aa10.13□□□□□ -0.79
CD44-208ENST00000428726 DBNDD2Q9BQY9 259 aa10.13□□□□□ -0.79
CD44-208ENST00000428726 PXDNLA1KZ92 1463 aa10.13□□□□□ -0.79
CD44-208ENST00000428726 NBPF26B4DH59 902 aa10.13□□□□□ -0.79
CD44-208ENST00000428726 GADD45BO75293 160 aaPredicted RBP10.13□□□□□ -0.79
CD44-208ENST00000428726 NBPF14Q5TI25 921 aa10.13□□□□□ -0.79
CD44-208ENST00000428726 NBPF10Q6P3W6 841 aaKnown RBP10.13□□□□□ -0.79
CD44-208ENST00000428726 NBPF15Q8N660 670 aa10.13□□□□□ -0.79
CD44-208ENST00000428726 HELBQ8NG08 1087 aaPredicted RBP10.13□□□□□ -0.79
CD44-208ENST00000428726 OSBPL3Q9H4L5 887 aa10.13□□□□□ -0.79
CD44-208ENST00000428726 A0A0D9SFI3 127 aa10.12□□□□□ -0.79
CD44-208ENST00000428726 HOXB7P09629 217 aa10.12□□□□□ -0.79
CD44-208ENST00000428726 NMIQ13287 307 aaPredicted RBP10.12□□□□□ -0.79
Retrieved 100 of 20,778 RNA–protein pairs in 8.6 ms