RNA–Protein interactions for RNA: ENST00000428678.1

UPK3BP1-201, Transcript of uroplakin 3B pseudogene 1, humanhuman

BASIC

Gene UPK3BP1, Length 509 nt, Biotype transcribed unprocessed pseudogene.

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPK3BP1-201ENST00000428678 BCORQ6W2J9 1755 aa24.58■■□□□ 1.53
UPK3BP1-201ENST00000428678 BTBD11A6QL63 1104 aa24.58■■□□□ 1.53
UPK3BP1-201ENST00000428678 KCNQ3O43525 872 aa24.58■■□□□ 1.53
UPK3BP1-201ENST00000428678 STYK1Q6J9G0 422 aa24.58■■□□□ 1.53
UPK3BP1-201ENST00000428678 PRPF40BQ6NWY9 871 aaKnown RBP24.58■■□□□ 1.53
UPK3BP1-201ENST00000428678 DZIP3Q86Y13 1208 aaKnown RBP24.58■■□□□ 1.53
UPK3BP1-201ENST00000428678 SRGNP10124 158 aa24.56■■□□□ 1.52
UPK3BP1-201ENST00000428678 PRKAR2BP31323 418 aa24.56■■□□□ 1.52
UPK3BP1-201ENST00000428678 PIP4K2AP48426 406 aaPredicted RBP24.56■■□□□ 1.52
UPK3BP1-201ENST00000428678 PHACTR3Q96KR7 559 aa24.56■■□□□ 1.52
UPK3BP1-201ENST00000428678 SOGA3Q5TF21 947 aa24.55■■□□□ 1.52
UPK3BP1-201ENST00000428678 MASTLQ96GX5 879 aa24.55■■□□□ 1.52
UPK3BP1-201ENST00000428678 ARFGEF2Q9Y6D5 1785 aa24.54■■□□□ 1.52
UPK3BP1-201ENST00000428678 DDNO94850 711 aaPredicted RBP24.54■■□□□ 1.52
UPK3BP1-201ENST00000428678 CHADLQ6NUI6 762 aa24.54■■□□□ 1.52
UPK3BP1-201ENST00000428678 USP16Q9Y5T5 823 aa24.54■■□□□ 1.52
UPK3BP1-201ENST00000428678 NBPF5PQ86XG9 351 aaPredicted RBP24.53■■□□□ 1.52
UPK3BP1-201ENST00000428678 CFAP53Q96M91 514 aa24.53■■□□□ 1.52
UPK3BP1-201ENST00000428678 RSPH6AQ9H0K4 717 aa24.52■■□□□ 1.52
UPK3BP1-201ENST00000428678 PRAMEF22A3QJZ6 481 aa24.51■■□□□ 1.51
UPK3BP1-201ENST00000428678 POTEIP0CG38 1075 aa24.51■■□□□ 1.51
UPK3BP1-201ENST00000428678 POTEJP0CG39 1038 aa24.51■■□□□ 1.51
UPK3BP1-201ENST00000428678 ZNF652Q9Y2D9 606 aa24.51■■□□□ 1.51
UPK3BP1-201ENST00000428678 CLEC4GQ6UXB4 293 aa24.5■■□□□ 1.51
UPK3BP1-201ENST00000428678 RTF1Q92541 710 aaKnown RBP24.5■■□□□ 1.51
UPK3BP1-201ENST00000428678 CREBZFQ9NS37 354 aa24.5■■□□□ 1.51
UPK3BP1-201ENST00000428678 MKRN1Q9UHC7 482 aaKnown RBP24.5■■□□□ 1.51
UPK3BP1-201ENST00000428678 SNRPA1P09661 255 aaKnown RBP24.49■■□□□ 1.51
UPK3BP1-201ENST00000428678 CCDC93Q567U6 631 aa24.49■■□□□ 1.51
UPK3BP1-201ENST00000428678 IQCA1LA6NCM1 817 aa24.48■■□□□ 1.51
UPK3BP1-201ENST00000428678 NPR1P16066 1061 aa24.48■■□□□ 1.51
UPK3BP1-201ENST00000428678 MCM10Q7L590 875 aa24.48■■□□□ 1.51
UPK3BP1-201ENST00000428678 NUDCQ9Y266 331 aa24.48■■□□□ 1.51
UPK3BP1-201ENST00000428678 C7orf43Q8WVR3 580 aa24.47■■□□□ 1.51
UPK3BP1-201ENST00000428678 U2AF1L5P0DN76 240 aaPredicted RBP24.46■■□□□ 1.51
UPK3BP1-201ENST00000428678 U2AF1Q01081 240 aaKnown RBP eCLIP24.46■■□□□ 1.51
UPK3BP1-201ENST00000428678 NIP7Q9Y221 180 aaKnown RBP eCLIP24.46■■□□□ 1.51
UPK3BP1-201ENST00000428678 FAM177BA6PVY3 158 aa24.45■■□□□ 1.5
UPK3BP1-201ENST00000428678 LDHDQ86WU2 507 aa24.45■■□□□ 1.5
UPK3BP1-201ENST00000428678 SCN4AP35499 1836 aa24.45■■□□□ 1.5
UPK3BP1-201ENST00000428678 TPTE2Q6XPS3 522 aa24.44■■□□□ 1.5
UPK3BP1-201ENST00000428678 L3MBTL3Q96JM7 780 aaPredicted RBP24.44■■□□□ 1.5
UPK3BP1-201ENST00000428678 TAF1DQ9H5J8 278 aaPredicted RBP24.44■■□□□ 1.5
UPK3BP1-201ENST00000428678 ZNF277Q9NRM2 450 aaPredicted RBP24.44■■□□□ 1.5
UPK3BP1-201ENST00000428678 NBPF26B4DH59 902 aa24.43■■□□□ 1.5
UPK3BP1-201ENST00000428678 FKBP4Q02790 459 aaKnown RBP eCLIP24.43■■□□□ 1.5
UPK3BP1-201ENST00000428678 DCTN1Q14203 1278 aa24.43■■□□□ 1.5
UPK3BP1-201ENST00000428678 NBPF10Q6P3W6 841 aaKnown RBP24.43■■□□□ 1.5
UPK3BP1-201ENST00000428678 NBPF15Q8N660 670 aa24.43■■□□□ 1.5
UPK3BP1-201ENST00000428678 OLFM4Q6UX06 510 aa24.42■■□□□ 1.5
UPK3BP1-201ENST00000428678 ZNF541Q9H0D2 1346 aa24.41■■□□□ 1.5
UPK3BP1-201ENST00000428678 KLRG2A4D1S0 409 aaPredicted RBP24.41■■□□□ 1.5
UPK3BP1-201ENST00000428678 EAPPQ56P03 285 aaPredicted RBP24.41■■□□□ 1.5
UPK3BP1-201ENST00000428678 CNTNAP1P78357 1384 aa24.41■■□□□ 1.5
UPK3BP1-201ENST00000428678 PASKQ96RG2 1323 aa24.4■■□□□ 1.5
UPK3BP1-201ENST00000428678 GTF2E1P29083 439 aaPredicted RBP24.4■■□□□ 1.5
UPK3BP1-201ENST00000428678 RTKN2Q8IZC4 609 aa24.4■■□□□ 1.5
UPK3BP1-201ENST00000428678 RGL2O15211 777 aa24.39■■□□□ 1.49
UPK3BP1-201ENST00000428678 PPP2R1AP30153 589 aa24.38■■□□□ 1.49
UPK3BP1-201ENST00000428678 HLFQ16534 295 aa24.38■■□□□ 1.49
UPK3BP1-201ENST00000428678 HACL1Q9UJ83 578 aa24.38■■□□□ 1.49
UPK3BP1-201ENST00000428678 CLEC11AQ9Y240 323 aa24.38■■□□□ 1.49
UPK3BP1-201ENST00000428678 HTATSF1O43719 755 aaKnown RBP24.37■■□□□ 1.49
UPK3BP1-201ENST00000428678 ALDH1B1P30837 517 aa24.37■■□□□ 1.49
UPK3BP1-201ENST00000428678 TMEM88BA6NKF7 163 aa24.36■■□□□ 1.49
UPK3BP1-201ENST00000428678 FOXN1O15353 648 aa24.36■■□□□ 1.49
UPK3BP1-201ENST00000428678 IARSP41252 1262 aaKnown RBP24.36■■□□□ 1.49
UPK3BP1-201ENST00000428678 TAF7Q15545 349 aaPredicted RBP24.36■■□□□ 1.49
UPK3BP1-201ENST00000428678 MIS18AQ9NYP9 233 aa24.36■■□□□ 1.49
UPK3BP1-201ENST00000428678 LAMB4A4D0S4 1761 aa24.36■■□□□ 1.49
UPK3BP1-201ENST00000428678 EPHX2P34913 555 aa24.35■■□□□ 1.49
UPK3BP1-201ENST00000428678 SYNE4Q8N205 404 aa24.35■■□□□ 1.49
UPK3BP1-201ENST00000428678 NGEFQ8N5V2 710 aa24.35■■□□□ 1.49
UPK3BP1-201ENST00000428678 RNF123Q5XPI4 1314 aa24.35■■□□□ 1.49
UPK3BP1-201ENST00000428678 ITGBL1O95965 494 aaPredicted RBP24.34■■□□□ 1.49
UPK3BP1-201ENST00000428678 AIDAQ96BJ3 306 aa24.34■■□□□ 1.49
UPK3BP1-201ENST00000428678 VEGFBP49765 207 aa24.33■■□□□ 1.49
UPK3BP1-201ENST00000428678 ABCC12Q96J65 1359 aa24.32■■□□□ 1.48
UPK3BP1-201ENST00000428678 FZD9O00144 591 aa24.32■■□□□ 1.48
UPK3BP1-201ENST00000428678 PNMA8AQ86V59 439 aaPredicted RBP24.32■■□□□ 1.48
UPK3BP1-201ENST00000428678 NUTM1Q86Y26 1132 aa24.32■■□□□ 1.48
UPK3BP1-201ENST00000428678 NYXQ9GZU5 481 aa24.32■■□□□ 1.48
UPK3BP1-201ENST00000428678 ADAMTSL1Q8N6G6 1762 aa24.31■■□□□ 1.48
UPK3BP1-201ENST00000428678 JDP2Q8WYK2 163 aa24.31■■□□□ 1.48
UPK3BP1-201ENST00000428678 NUP98P52948 1817 aa24.31■■□□□ 1.48
UPK3BP1-201ENST00000428678 CRY2Q49AN0 593 aa24.3■■□□□ 1.48
UPK3BP1-201ENST00000428678 MAP1SQ66K74 1059 aaPredicted RBP24.3■■□□□ 1.48
UPK3BP1-201ENST00000428678 GPC2Q8N158 579 aa24.3■■□□□ 1.48
UPK3BP1-201ENST00000428678 PSMD1Q99460 953 aa24.3■■□□□ 1.48
UPK3BP1-201ENST00000428678 NEFMP07197 916 aa24.29■■□□□ 1.48
UPK3BP1-201ENST00000428678 CTCFP49711 727 aaPredicted RBP24.29■■□□□ 1.48
UPK3BP1-201ENST00000428678 KIF6Q6ZMV9 814 aa24.29■■□□□ 1.48
UPK3BP1-201ENST00000428678 CNTROBQ8N137 903 aa24.29■■□□□ 1.48
UPK3BP1-201ENST00000428678 RPGRQ92834 1020 aaKnown RBP24.29■■□□□ 1.48
UPK3BP1-201ENST00000428678 PRDM10Q9NQV6 1147 aa24.29■■□□□ 1.48
UPK3BP1-201ENST00000428678 RRP7AQ9Y3A4 280 aaKnown RBP24.29■■□□□ 1.48
UPK3BP1-201ENST00000428678 DLG5Q8TDM6 1919 aa24.29■■□□□ 1.48
UPK3BP1-201ENST00000428678 MAP3K15Q6ZN16 1313 aa24.29■■□□□ 1.48
UPK3BP1-201ENST00000428678 ERVV-1B6SEH8 477 aa24.28■■□□□ 1.48
UPK3BP1-201ENST00000428678 GPTP24298 496 aa24.28■■□□□ 1.48
Retrieved 100 of 20,778 RNA–protein pairs in 15.4 ms