RNA–Protein interactions for RNA: ENST00000427112.6

USP40-203, Transcript of ubiquitin specific peptidase 40, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene USP40, Length 3,744 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP40-203ENST00000427112 JAK2O60674 1132 aa10.36□□□□□ -0.75
USP40-203ENST00000427112 PTMSP20962 102 aa10.36□□□□□ -0.75
USP40-203ENST00000427112 PTGS1P23219 599 aa10.36□□□□□ -0.75
USP40-203ENST00000427112 CCT2P78371 535 aaKnown RBP10.36□□□□□ -0.75
USP40-203ENST00000427112 CNTROBQ8N137 903 aa10.36□□□□□ -0.75
USP40-203ENST00000427112 CLASRPQ8N2M8 674 aaKnown RBP10.36□□□□□ -0.75
USP40-203ENST00000427112 SETBP1Q9Y6X0 1596 aa10.36□□□□□ -0.75
USP40-203ENST00000427112 WDR33Q9C0J8 1336 aaKnown RBP10.36□□□□□ -0.75
USP40-203ENST00000427112 MBD3O95983 291 aa10.35□□□□□ -0.75
USP40-203ENST00000427112 ZSCAN22P10073 491 aaPredicted RBP10.35□□□□□ -0.75
USP40-203ENST00000427112 KCNA6P17658 529 aa10.35□□□□□ -0.75
USP40-203ENST00000427112 BRPF1P55201 1214 aaPredicted RBP10.35□□□□□ -0.75
USP40-203ENST00000427112 ME3Q16798 604 aa10.35□□□□□ -0.75
USP40-203ENST00000427112 DNAAF4Q8WXU2 420 aa10.35□□□□□ -0.75
USP40-203ENST00000427112 NEUROD6Q96NK8 337 aa10.35□□□□□ -0.75
USP40-203ENST00000427112 PSME1Q06323 249 aa10.35□□□□□ -0.75
USP40-203ENST00000427112 NMIQ13287 307 aaPredicted RBP10.35□□□□□ -0.75
USP40-203ENST00000427112 SYAP1Q96A49 352 aaPredicted RBP10.35□□□□□ -0.75
USP40-203ENST00000427112 HOXC9P31274 260 aa10.35□□□□□ -0.75
USP40-203ENST00000427112 ARID5BQ14865 1188 aa10.34□□□□□ -0.75
USP40-203ENST00000427112 DDX46Q7L014 1031 aaKnown RBP10.34□□□□□ -0.75
USP40-203ENST00000427112 CHMP4CQ96CF2 233 aa10.34□□□□□ -0.75
USP40-203ENST00000427112 RBM8AQ9Y5S9 174 aaKnown RBP10.34□□□□□ -0.75
USP40-203ENST00000427112 A0A0G2JLW4 131 aa10.34□□□□□ -0.75
USP40-203ENST00000427112 HAP1P54257 671 aaPredicted RBP10.34□□□□□ -0.75
USP40-203ENST00000427112 NOLC1Q14978 699 aaKnown RBP eCLIP10.34□□□□□ -0.75
USP40-203ENST00000427112 CABLES1Q8TDN4 633 aa10.34□□□□□ -0.75
USP40-203ENST00000427112 BBXQ8WY36 941 aaPredicted RBP10.34□□□□□ -0.75
USP40-203ENST00000427112 TRMT1Q9NXH9 659 aaKnown RBP10.34□□□□□ -0.75
USP40-203ENST00000427112 ISY1Q9ULR0 285 aaKnown RBP10.34□□□□□ -0.75
USP40-203ENST00000427112 LIMCH1Q9UPQ0 1083 aa10.34□□□□□ -0.75
USP40-203ENST00000427112 IFT172Q9UG01 1749 aa10.34□□□□□ -0.75
USP40-203ENST00000427112 HECW2Q9P2P5 1572 aa10.34□□□□□ -0.75
USP40-203ENST00000427112 SGSM2O43147 1006 aa10.34□□□□□ -0.75
USP40-203ENST00000427112 F13A1P00488 732 aa10.34□□□□□ -0.75
USP40-203ENST00000427112 OTUD7BQ6GQQ9 843 aa10.34□□□□□ -0.75
USP40-203ENST00000427112 RIC3Q7Z5B4 369 aa10.34□□□□□ -0.75
USP40-203ENST00000427112 TRIM5Q9C035 493 aa10.34□□□□□ -0.75
USP40-203ENST00000427112 TPCN1Q9ULQ1 816 aa10.34□□□□□ -0.75
USP40-203ENST00000427112 A0A0D9SFI3 127 aa10.33□□□□□ -0.76
USP40-203ENST00000427112 HSP90AA4PQ58FG1 418 aa10.33□□□□□ -0.76
USP40-203ENST00000427112 PI4K2BQ8TCG2 481 aa10.33□□□□□ -0.76
USP40-203ENST00000427112 DACT1Q9NYF0 836 aa10.33□□□□□ -0.76
USP40-203ENST00000427112 EID1Q9Y6B2 187 aa10.33□□□□□ -0.76
USP40-203ENST00000427112 MLH3Q9UHC1 1453 aa10.33□□□□□ -0.76
USP40-203ENST00000427112 LARP1Q6PKG0 1096 aaKnown RBP10.33□□□□□ -0.76
USP40-203ENST00000427112 FILIP1Q7Z7B0 1213 aa10.33□□□□□ -0.76
USP40-203ENST00000427112 ZNF589Q86UQ0 364 aaPredicted RBP10.33□□□□□ -0.76
USP40-203ENST00000427112 PDCL3Q9H2J4 239 aa10.33□□□□□ -0.76
USP40-203ENST00000427112 SNRKQ9NRH2 765 aa10.33□□□□□ -0.76
USP40-203ENST00000427112 CYP46A1Q9Y6A2 500 aa10.33□□□□□ -0.76
USP40-203ENST00000427112 KAT6BQ8WYB5 2073 aa10.33□□□□□ -0.76
USP40-203ENST00000427112 ZMYM3Q14202 1370 aa10.33□□□□□ -0.76
USP40-203ENST00000427112 TMX1Q9H3N1 280 aa10.33□□□□□ -0.76
USP40-203ENST00000427112 NCOA5Q9HCD5 579 aaKnown RBP10.33□□□□□ -0.76
USP40-203ENST00000427112 HSPA4P34932 840 aa10.32□□□□□ -0.76
USP40-203ENST00000427112 G3BP1Q13283 466 aaKnown RBP eCLIP10.32□□□□□ -0.76
USP40-203ENST00000427112 EAF2Q96CJ1 260 aaPredicted RBP10.32□□□□□ -0.76
USP40-203ENST00000427112 KIF1BPQ96EK5 621 aa10.32□□□□□ -0.76
USP40-203ENST00000427112 LSG1Q9H089 658 aaKnown RBP10.32□□□□□ -0.76
USP40-203ENST00000427112 DNAJC25Q9H1X3 360 aa10.32□□□□□ -0.76
USP40-203ENST00000427112 BICC1Q9H694 974 aaKnown RBP10.32□□□□□ -0.76
USP40-203ENST00000427112 IBTKQ9P2D0 1353 aaPredicted RBP10.32□□□□□ -0.76
USP40-203ENST00000427112 PPP4R3BQ5MIZ7 849 aa10.32□□□□□ -0.76
USP40-203ENST00000427112 CCDC186Q7Z3E2 898 aa10.32□□□□□ -0.76
USP40-203ENST00000427112 TTC6Q86TZ1 520 aa10.32□□□□□ -0.76
USP40-203ENST00000427112 NLRP2Q9NX02 1062 aa10.32□□□□□ -0.76
USP40-203ENST00000427112 CSB-PGBD3P0DP91 1061 aa10.32□□□□□ -0.76
USP40-203ENST00000427112 HAND2P61296 217 aa10.32□□□□□ -0.76
USP40-203ENST00000427112 CCDC183Q5T5S1 534 aa10.32□□□□□ -0.76
USP40-203ENST00000427112 SUCLG2Q96I99 432 aa10.32□□□□□ -0.76
USP40-203ENST00000427112 MYD88Q99836 296 aa10.32□□□□□ -0.76
USP40-203ENST00000427112 DLG5Q8TDM6 1919 aa10.32□□□□□ -0.76
USP40-203ENST00000427112 H3BQV1 296 aa10.31□□□□□ -0.76
USP40-203ENST00000427112 BIN1O00499 593 aa10.31□□□□□ -0.76
USP40-203ENST00000427112 CHRNA2Q15822 529 aa10.31□□□□□ -0.76
USP40-203ENST00000427112 IFFO2Q5TF58 517 aa10.31□□□□□ -0.76
USP40-203ENST00000427112 PDLIM2Q96JY6 352 aa10.31□□□□□ -0.76
USP40-203ENST00000427112 GJB4Q9NTQ9 266 aa10.31□□□□□ -0.76
USP40-203ENST00000427112 CRB1P82279 1406 aa10.31□□□□□ -0.76
USP40-203ENST00000427112 ZKSCAN1P17029 563 aaPredicted RBP10.31□□□□□ -0.76
USP40-203ENST00000427112 U2AF2P26368 475 aaKnown RBP eCLIP10.31□□□□□ -0.762e-6■■■□□ 15.3
USP40-203ENST00000427112 ANO6Q4KMQ2 910 aa10.31□□□□□ -0.76
USP40-203ENST00000427112 ORAI2Q96SN7 254 aa10.31□□□□□ -0.76
USP40-203ENST00000427112 RPAP1Q9BWH6 1393 aaPredicted RBP10.31□□□□□ -0.76
USP40-203ENST00000427112 PAXIP1Q6ZW49 1069 aaPredicted RBP10.31□□□□□ -0.76
USP40-203ENST00000427112 C1orf141Q5JVX7 400 aa10.3□□□□□ -0.76
USP40-203ENST00000427112 SASS6Q6UVJ0 657 aa10.3□□□□□ -0.76
USP40-203ENST00000427112 GPHNQ9NQX3 736 aaPredicted RBP10.3□□□□□ -0.76
USP40-203ENST00000427112 MTMR6Q9Y217 621 aa10.3□□□□□ -0.76
USP40-203ENST00000427112 A2ML1A8K2U0 1454 aa10.3□□□□□ -0.76
USP40-203ENST00000427112 CPSF1Q10570 1443 aaKnown RBP10.3□□□□□ -0.76
USP40-203ENST00000427112 CUL4AQ13619 759 aa10.3□□□□□ -0.76
USP40-203ENST00000427112 CREB3L3Q68CJ9 461 aa10.3□□□□□ -0.76
USP40-203ENST00000427112 TNMDQ9H2S6 317 aa10.3□□□□□ -0.76
USP40-203ENST00000427112 HYPKQ9NX55 129 aa10.3□□□□□ -0.76
USP40-203ENST00000427112 USP16Q9Y5T5 823 aa10.3□□□□□ -0.76
USP40-203ENST00000427112 RAD50Q92878 1312 aa10.3□□□□□ -0.76
USP40-203ENST00000427112 HDGFP51858 240 aaKnown RBP10.3□□□□□ -0.76
USP40-203ENST00000427112 ST3GAL1Q11201 340 aa10.3□□□□□ -0.76
Retrieved 100 of 20,778 RNA–protein pairs in 13.8 ms