RNA–Protein interactions for RNA: ENST00000409357.5

NIF3L1-204, Transcript of NGG1 interacting factor 3 like 1, humanhuman

APPRIS P1 TSL 5 BASIC

Gene NIF3L1, Length 1,679 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NIF3L1-204ENST00000409357 MCTP1Q6DN14 999 aa12.89□□□□□ -0.35
NIF3L1-204ENST00000409357 ZNF830Q96NB3 372 aaPredicted RBP12.89□□□□□ -0.35
NIF3L1-204ENST00000409357 TNS2Q63HR2 1409 aa12.89□□□□□ -0.35
NIF3L1-204ENST00000409357 RREB1Q92766 1687 aa12.88□□□□□ -0.35
NIF3L1-204ENST00000409357 MAP2P11137 1827 aaKnown RBP12.88□□□□□ -0.35
NIF3L1-204ENST00000409357 CCDC146Q8IYE0 955 aa12.88□□□□□ -0.35
NIF3L1-204ENST00000409357 GPT2Q8TD30 523 aa12.88□□□□□ -0.35
NIF3L1-204ENST00000409357 MORC2Q9Y6X9 1032 aaPredicted RBP12.88□□□□□ -0.35
NIF3L1-204ENST00000409357 SHANK3Q9BYB0 1731 aa12.88□□□□□ -0.35
NIF3L1-204ENST00000409357 NUP188Q5SRE5 1749 aa12.87□□□□□ -0.35
NIF3L1-204ENST00000409357 ABCB7O75027 752 aa12.87□□□□□ -0.35
NIF3L1-204ENST00000409357 BAG6P46379 1132 aa12.87□□□□□ -0.35
NIF3L1-204ENST00000409357 AMPHP49418 695 aa12.87□□□□□ -0.35
NIF3L1-204ENST00000409357 EZH2Q15910 746 aaKnown RBP12.87□□□□□ -0.35
NIF3L1-204ENST00000409357 TSPY26PQ9H489 355 aa12.87□□□□□ -0.35
NIF3L1-204ENST00000409357 PTMAP06454 111 aaKnown RBP12.86□□□□□ -0.35
NIF3L1-204ENST00000409357 SLFN14P0C7P3 912 aa12.86□□□□□ -0.35
NIF3L1-204ENST00000409357 CHAF1AQ13111 956 aaPredicted RBP12.86□□□□□ -0.35
NIF3L1-204ENST00000409357 DNTTIP2Q5QJE6 756 aaKnown RBP12.86□□□□□ -0.35
NIF3L1-204ENST00000409357 GCC1Q96CN9 775 aa12.86□□□□□ -0.35
NIF3L1-204ENST00000409357 TIGD1Q96MW7 591 aa12.86□□□□□ -0.35
NIF3L1-204ENST00000409357 CALCOCO1Q9P1Z2 691 aa12.86□□□□□ -0.35
NIF3L1-204ENST00000409357 EMILIN1Q9Y6C2 1016 aa12.86□□□□□ -0.35
NIF3L1-204ENST00000409357 RTL1A6NKG5 1358 aa12.86□□□□□ -0.35
NIF3L1-204ENST00000409357 CD2BP2O95400 341 aaKnown RBP12.86□□□□□ -0.35
NIF3L1-204ENST00000409357 IRX5P78411 483 aaPredicted RBP12.86□□□□□ -0.35
NIF3L1-204ENST00000409357 CHD1LQ86WJ1 897 aa12.86□□□□□ -0.35
NIF3L1-204ENST00000409357 CAMKK2Q96RR4 588 aa12.86□□□□□ -0.35
NIF3L1-204ENST00000409357 ZBTB40Q9NUA8 1239 aa12.86□□□□□ -0.35
NIF3L1-204ENST00000409357 TMEM63CQ9P1W3 806 aa12.86□□□□□ -0.35
NIF3L1-204ENST00000409357 MEGF6O75095 1541 aa12.86□□□□□ -0.35
NIF3L1-204ENST00000409357 APBA3O96018 575 aa12.85□□□□□ -0.35
NIF3L1-204ENST00000409357 HSP90AB2PQ58FF8 381 aa12.85□□□□□ -0.35
NIF3L1-204ENST00000409357 ZNF771Q7L3S4 317 aaPredicted RBP12.85□□□□□ -0.35
NIF3L1-204ENST00000409357 CGNQ9P2M7 1197 aaKnown RBP12.85□□□□□ -0.35
NIF3L1-204ENST00000409357 DDX41Q9UJV9 622 aaKnown RBP12.85□□□□□ -0.35
NIF3L1-204ENST00000409357 KAT6BQ8WYB5 2073 aa12.85□□□□□ -0.35
NIF3L1-204ENST00000409357 IL2RBP14784 551 aa12.84□□□□□ -0.35
NIF3L1-204ENST00000409357 TEX2Q8IWB9 1127 aa12.84□□□□□ -0.35
NIF3L1-204ENST00000409357 USHBP1Q8N6Y0 703 aa12.84□□□□□ -0.35
NIF3L1-204ENST00000409357 CDCA7Q9BWT1 371 aaPredicted RBP12.84□□□□□ -0.35
NIF3L1-204ENST00000409357 FAM53CQ9NYF3 392 aa12.84□□□□□ -0.35
NIF3L1-204ENST00000409357 NHSQ6T4R5 1651 aa12.83□□□□□ -0.35
NIF3L1-204ENST00000409357 PSDA5PKW4 1024 aaPredicted RBP12.83□□□□□ -0.35
NIF3L1-204ENST00000409357 BRPF1P55201 1214 aaPredicted RBP12.83□□□□□ -0.35
NIF3L1-204ENST00000409357 NBPF6Q5VWK0 638 aa12.83□□□□□ -0.35
NIF3L1-204ENST00000409357 NBPF4Q96M43 638 aa12.83□□□□□ -0.35
NIF3L1-204ENST00000409357 YY1AP1Q9H869 796 aa12.83□□□□□ -0.35
NIF3L1-204ENST00000409357 CTNNA3Q9UI47 895 aa12.83□□□□□ -0.35
NIF3L1-204ENST00000409357 FLT4P35916 1363 aa12.83□□□□□ -0.36
NIF3L1-204ENST00000409357 RGPD3A6NKT7 1758 aaPredicted RBP12.83□□□□□ -0.36
NIF3L1-204ENST00000409357 RGPD4Q7Z3J3 1758 aa12.83□□□□□ -0.36
NIF3L1-204ENST00000409357 EXOC5O00471 708 aa12.83□□□□□ -0.36
NIF3L1-204ENST00000409357 PRPF40AO75400 957 aaKnown RBP12.83□□□□□ -0.36
NIF3L1-204ENST00000409357 CDC45O75419 566 aa12.83□□□□□ -0.36
NIF3L1-204ENST00000409357 KIAA1524Q8TCG1 905 aa12.83□□□□□ -0.36
NIF3L1-204ENST00000409357 USP25Q9UHP3 1055 aa12.83□□□□□ -0.36
NIF3L1-204ENST00000409357 IL16Q14005 1332 aa12.83□□□□□ -0.36
NIF3L1-204ENST00000409357 BCL9O00512 1426 aa12.82□□□□□ -0.36
NIF3L1-204ENST00000409357 KCNQ2O43526 872 aa12.82□□□□□ -0.36
NIF3L1-204ENST00000409357 TERF2Q15554 542 aa12.82□□□□□ -0.36
NIF3L1-204ENST00000409357 TBC1D9Q6ZT07 1266 aa12.82□□□□□ -0.36
NIF3L1-204ENST00000409357 SYCE3A1L190 88 aa12.81□□□□□ -0.36
NIF3L1-204ENST00000409357 BTAF1O14981 1849 aa12.81□□□□□ -0.36
NIF3L1-204ENST00000409357 ATF7IPQ6VMQ6 1270 aa12.81□□□□□ -0.36
NIF3L1-204ENST00000409357 DOT1LQ8TEK3 1739 aa12.81□□□□□ -0.36
NIF3L1-204ENST00000409357 ZNF428Q96B54 188 aa12.81□□□□□ -0.36
NIF3L1-204ENST00000409357 IPO8O15397 1037 aaKnown RBP12.8□□□□□ -0.36
NIF3L1-204ENST00000409357 ACSBG1Q96GR2 724 aa12.8□□□□□ -0.36
NIF3L1-204ENST00000409357 TNNQ9UQP3 1299 aa12.8□□□□□ -0.36
NIF3L1-204ENST00000409357 U2AF2P26368 475 aaKnown RBP eCLIP12.8□□□□□ -0.361e-6■□□□□ 9.2
NIF3L1-204ENST00000409357 MCM2P49736 904 aa12.8□□□□□ -0.36
NIF3L1-204ENST00000409357 EFCC1Q9HA90 598 aa12.8□□□□□ -0.36
NIF3L1-204ENST00000409357 POLKQ9UBT6 870 aa12.8□□□□□ -0.36
NIF3L1-204ENST00000409357 ZDHHC9Q9Y397 364 aa12.8□□□□□ -0.36
NIF3L1-204ENST00000409357 KIF24Q5T7B8 1368 aa12.79□□□□□ -0.36
NIF3L1-204ENST00000409357 RIOK3O14730 519 aaKnown RBP12.79□□□□□ -0.36
NIF3L1-204ENST00000409357 ST18O60284 1047 aa12.79□□□□□ -0.36
NIF3L1-204ENST00000409357 TRIM27P14373 513 aa12.79□□□□□ -0.36
NIF3L1-204ENST00000409357 C1QBPQ07021 282 aaKnown RBP12.79□□□□□ -0.36
NIF3L1-204ENST00000409357 R3HDM1Q15032 1099 aaKnown RBP12.79□□□□□ -0.36
NIF3L1-204ENST00000409357 ARID3AQ99856 593 aa12.79□□□□□ -0.36
NIF3L1-204ENST00000409357 KCNJ4P48050 445 aa12.78□□□□□ -0.36
NIF3L1-204ENST00000409357 TMEM87AQ8NBN3 555 aa12.78□□□□□ -0.36
NIF3L1-204ENST00000409357 DDX54Q8TDD1 881 aaKnown RBP12.78□□□□□ -0.36
NIF3L1-204ENST00000409357 SMTNL1A8MU46 457 aa12.77□□□□□ -0.36
NIF3L1-204ENST00000409357 IRX3P78415 501 aaPredicted RBP12.77□□□□□ -0.36
NIF3L1-204ENST00000409357 ALDH1L2Q3SY69 923 aa12.77□□□□□ -0.36
NIF3L1-204ENST00000409357 INTS4Q96HW7 963 aaKnown RBP12.77□□□□□ -0.36
NIF3L1-204ENST00000409357 RBM27Q9P2N5 1060 aaKnown RBP12.77□□□□□ -0.36
NIF3L1-204ENST00000409357 PAXBP1Q9Y5B6 917 aa12.77□□□□□ -0.36
NIF3L1-204ENST00000409357 PKD1L3Q7Z443 1732 aa12.77□□□□□ -0.37
NIF3L1-204ENST00000409357 GOLGA6L6A8MZA4 724 aa12.77□□□□□ -0.37
NIF3L1-204ENST00000409357 BRD1O95696 1058 aa12.77□□□□□ -0.37
NIF3L1-204ENST00000409357 NCBP1Q09161 790 aaKnown RBP12.77□□□□□ -0.37
NIF3L1-204ENST00000409357 SLFNL1Q499Z3 407 aa12.77□□□□□ -0.37
NIF3L1-204ENST00000409357 KRT222Q8N1A0 295 aa12.77□□□□□ -0.37
NIF3L1-204ENST00000409357 USP26Q9BXU7 913 aa12.77□□□□□ -0.37
NIF3L1-204ENST00000409357 NCAPD2Q15021 1401 aa12.76□□□□□ -0.37
NIF3L1-204ENST00000409357 AK9Q5TCS8 1911 aa12.76□□□□□ -0.37
Retrieved 100 of 20,778 RNA–protein pairs in 12.7 ms