RNA–Protein interactions for RNA: ENST00000409025.5

USP39-202, Transcript of ubiquitin specific peptidase 39, humanhuman

TSL 5 BASIC

Gene USP39, Length 1,946 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP39-202ENST00000409025 SALL3Q9BXA9 1300 aa23.38■■□□□ 1.33
USP39-202ENST00000409025 UBAP1LF5GYI3 381 aa23.38■■□□□ 1.33
USP39-202ENST00000409025 SUCLG2Q96I99 432 aa23.38■■□□□ 1.33
USP39-202ENST00000409025 BECN1Q14457 450 aa23.37■■□□□ 1.33
USP39-202ENST00000409025 KIF1BPQ96EK5 621 aa23.37■■□□□ 1.33
USP39-202ENST00000409025 A1BGP04217 495 aa23.37■■□□□ 1.33
USP39-202ENST00000409025 SDSP20132 328 aa23.37■■□□□ 1.33
USP39-202ENST00000409025 MX1P20591 662 aa23.37■■□□□ 1.33
USP39-202ENST00000409025 TEX13AQ9BXU3 409 aaPredicted RBP23.37■■□□□ 1.33
USP39-202ENST00000409025 SLC4A3P48751 1232 aa23.36■■□□□ 1.33
USP39-202ENST00000409025 VSIG10Q8N0Z9 540 aa23.36■■□□□ 1.33
USP39-202ENST00000409025 RHPN1Q8TCX5 695 aa23.36■■□□□ 1.33
USP39-202ENST00000409025 ASAP1Q9ULH1 1129 aa23.36■■□□□ 1.33
USP39-202ENST00000409025 AFDNP55196 1824 aaKnown RBP23.36■■□□□ 1.33
USP39-202ENST00000409025 NWD2Q9ULI1 1742 aa23.36■■□□□ 1.33
USP39-202ENST00000409025 ATG3Q9NT62 314 aa23.35■■□□□ 1.33
USP39-202ENST00000409025 CASC1Q6TDU7 716 aa23.35■■□□□ 1.33
USP39-202ENST00000409025 BICC1Q9H694 974 aaKnown RBP23.35■■□□□ 1.33
USP39-202ENST00000409025 STAP2Q9UGK3 403 aa23.35■■□□□ 1.33
USP39-202ENST00000409025 KAZALD1Q96I82 304 aa23.34■■□□□ 1.33
USP39-202ENST00000409025 IL1RAPL2Q9NP60 686 aa23.34■■□□□ 1.33
USP39-202ENST00000409025 BCL9O00512 1426 aa23.34■■□□□ 1.33
USP39-202ENST00000409025 RBM25P49756 843 aaKnown RBP23.33■■□□□ 1.33
USP39-202ENST00000409025 OS9Q13438 667 aaPredicted RBP23.33■■□□□ 1.33
USP39-202ENST00000409025 AOX1Q06278 1338 aa23.33■■□□□ 1.32
USP39-202ENST00000409025 SLIT2O94813 1529 aa23.32■■□□□ 1.32
USP39-202ENST00000409025 DDB1Q16531 1140 aa23.32■■□□□ 1.32
USP39-202ENST00000409025 SPATA31A5Q5VU36 1347 aa23.32■■□□□ 1.32
USP39-202ENST00000409025 SPATA31A7Q8IWB4 1347 aa23.32■■□□□ 1.32
USP39-202ENST00000409025 TTLL7Q6ZT98 887 aa23.31■■□□□ 1.32
USP39-202ENST00000409025 ERC1Q8IUD2 1116 aa23.31■■□□□ 1.32
USP39-202ENST00000409025 RBM42Q9BTD8 480 aaKnown RBP23.31■■□□□ 1.32
USP39-202ENST00000409025 ATP5J2-PTCD1G3V325 749 aa23.31■■□□□ 1.32
USP39-202ENST00000409025 NUP188Q5SRE5 1749 aa23.31■■□□□ 1.32
USP39-202ENST00000409025 STARD3NLO95772 234 aa23.3■■□□□ 1.32
USP39-202ENST00000409025 DNAJC10Q8IXB1 793 aa23.3■■□□□ 1.32
USP39-202ENST00000409025 CCDC9Q9Y3X0 531 aaKnown RBP23.3■■□□□ 1.32
USP39-202ENST00000409025 SYTL4Q96C24 671 aaPredicted RBP23.29■■□□□ 1.32
USP39-202ENST00000409025 COL15A1P39059 1388 aa23.29■■□□□ 1.32
USP39-202ENST00000409025 A0A087WZG4 1122 aa23.29■■□□□ 1.32
USP39-202ENST00000409025 TSHZ3Q63HK5 1081 aa23.29■■□□□ 1.32
USP39-202ENST00000409025 NUTM1Q86Y26 1132 aa23.29■■□□□ 1.32
USP39-202ENST00000409025 TUBGCP6Q96RT7 1819 aa23.28■■□□□ 1.32
USP39-202ENST00000409025 BARGINQ6ZT62 677 aa23.28■■□□□ 1.32
USP39-202ENST00000409025 PA2G4Q9UQ80 394 aaKnown RBP23.28■■□□□ 1.32
USP39-202ENST00000409025 DOT1LQ8TEK3 1739 aa23.28■■□□□ 1.32
USP39-202ENST00000409025 UBE3BQ7Z3V4 1068 aa23.27■■□□□ 1.32
USP39-202ENST00000409025 KAT6BQ8WYB5 2073 aa23.27■■□□□ 1.32
USP39-202ENST00000409025 JCADQ9P266 1359 aa23.27■■□□□ 1.32
USP39-202ENST00000409025 G3BP1Q13283 466 aaKnown RBP eCLIP23.27■■□□□ 1.32
USP39-202ENST00000409025 CLASRPQ8N2M8 674 aaKnown RBP23.27■■□□□ 1.32
USP39-202ENST00000409025 ZBTB3Q9H5J0 574 aa23.27■■□□□ 1.32
USP39-202ENST00000409025 PRIM1P49642 420 aaKnown RBP23.26■■□□□ 1.31
USP39-202ENST00000409025 CWC25Q9NXE8 425 aaPredicted RBP23.26■■□□□ 1.31
USP39-202ENST00000409025 EPHA10Q5JZY3 1008 aa23.25■■□□□ 1.31
USP39-202ENST00000409025 UNC5CLQ8IV45 518 aa23.25■■□□□ 1.31
USP39-202ENST00000409025 JARID2Q92833 1246 aaPredicted RBP23.25■■□□□ 1.31
USP39-202ENST00000409025 TRIM6-TRIM34B2RNG4 842 aa23.24■■□□□ 1.31
USP39-202ENST00000409025 TBC1D2Q9BYX2 928 aa23.24■■□□□ 1.31
USP39-202ENST00000409025 H7C1W4 665 aa23.23■■□□□ 1.31
USP39-202ENST00000409025 CASP7P55210 303 aa23.23■■□□□ 1.31
USP39-202ENST00000409025 RABL6Q3YEC7 729 aaPredicted RBP23.23■■□□□ 1.31
USP39-202ENST00000409025 KIF6Q6ZMV9 814 aa23.23■■□□□ 1.31
USP39-202ENST00000409025 CCDC191Q8NCU4 936 aa23.23■■□□□ 1.31
USP39-202ENST00000409025 ZNF330Q9Y3S2 320 aaPredicted RBP23.23■■□□□ 1.31
USP39-202ENST00000409025 RILPL2Q969X0 211 aa23.23■■□□□ 1.31
USP39-202ENST00000409025 USP42Q9H9J4 1324 aaKnown RBP23.22■■□□□ 1.31
USP39-202ENST00000409025 MARCH10Q8NA82 808 aaPredicted RBP23.22■■□□□ 1.31
USP39-202ENST00000409025 NGLY1Q96IV0 654 aa23.22■■□□□ 1.31
USP39-202ENST00000409025 TTC41PQ6P2S7 1318 aa23.22■■□□□ 1.31
USP39-202ENST00000409025 ERC2O15083 957 aa23.21■■□□□ 1.31
USP39-202ENST00000409025 REC8O95072 547 aa23.21■■□□□ 1.31
USP39-202ENST00000409025 PI4K2BQ8TCG2 481 aa23.21■■□□□ 1.31
USP39-202ENST00000409025 SLC4A9Q96Q91 983 aa23.21■■□□□ 1.31
USP39-202ENST00000409025 CYP19A1P11511 503 aaPredicted RBP23.21■■□□□ 1.31
USP39-202ENST00000409025 CERKQ8TCT0 537 aa23.21■■□□□ 1.31
USP39-202ENST00000409025 C8orf37Q96NL8 207 aa23.21■■□□□ 1.31
USP39-202ENST00000409025 IFIT2P09913 472 aaKnown RBP23.2■■□□□ 1.3
USP39-202ENST00000409025 GPATCH3Q96I76 525 aa23.2■■□□□ 1.3
USP39-202ENST00000409025 USP26Q9BXU7 913 aa23.2■■□□□ 1.3
USP39-202ENST00000409025 COPRSQ9NQ92 184 aa23.2■■□□□ 1.3
USP39-202ENST00000409025 TJP1Q07157 1748 aa23.2■■□□□ 1.3
USP39-202ENST00000409025 SASH1O94885 1247 aa23.2■■□□□ 1.3
USP39-202ENST00000409025 TCIRG1Q13488 830 aa23.2■■□□□ 1.3
USP39-202ENST00000409025 VPS72Q15906 364 aa23.19■■□□□ 1.3
USP39-202ENST00000409025 ISCA1Q9BUE6 129 aa23.19■■□□□ 1.3
USP39-202ENST00000409025 SIL1Q9H173 461 aa23.19■■□□□ 1.3
USP39-202ENST00000409025 A0A0G2JS52 829 aa23.18■■□□□ 1.3
USP39-202ENST00000409025 RFX5P48382 616 aaPredicted RBP23.18■■□□□ 1.3
USP39-202ENST00000409025 AACSQ86V21 672 aa23.18■■□□□ 1.3
USP39-202ENST00000409025 ACSBG1Q96GR2 724 aa23.18■■□□□ 1.3
USP39-202ENST00000409025 KIF2CQ99661 725 aa23.18■■□□□ 1.3
USP39-202ENST00000409025 TNKS1BP1Q9C0C2 1729 aaKnown RBP23.18■■□□□ 1.3
USP39-202ENST00000409025 GLRX3O76003 335 aaKnown RBP23.18■■□□□ 1.3
USP39-202ENST00000409025 HSCBQ8IWL3 235 aa23.18■■□□□ 1.3
USP39-202ENST00000409025 KLHDC4Q8TBB5 520 aa23.18■■□□□ 1.3
USP39-202ENST00000409025 BCL9LQ86UU0 1499 aa23.17■■□□□ 1.3
USP39-202ENST00000409025 CHMLP26374 656 aa23.17■■□□□ 1.3
USP39-202ENST00000409025 FOXO4P98177 505 aa23.17■■□□□ 1.3
USP39-202ENST00000409025 SNX21Q969T3 373 aa23.17■■□□□ 1.3
Retrieved 100 of 20,778 RNA–protein pairs in 102.1 ms