RNA–Protein interactions for RNA: ENST00000404008.6

USP42-202, Transcript of ubiquitin specific peptidase 42, humanhuman

TSL 2

Gene USP42, Length 1,380 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP42-202ENST00000404008 SSH1Q8WYL5 1049 aa37.62■■■■□ 3.61
USP42-202ENST00000404008 BCL2L12Q9HB09 334 aa37.61■■■■□ 3.61
USP42-202ENST00000404008 MAP3K15Q6ZN16 1313 aa37.61■■■■□ 3.61
USP42-202ENST00000404008 ARFGEF2Q9Y6D5 1785 aa37.61■■■■□ 3.61
USP42-202ENST00000404008 ZBTB7AO95365 584 aa37.6■■■■□ 3.61
USP42-202ENST00000404008 MTFR1LQ9H019 292 aa37.6■■■■□ 3.61
USP42-202ENST00000404008 G2E3Q7L622 706 aa37.59■■■■□ 3.61
USP42-202ENST00000404008 ERVV-1B6SEH8 477 aa37.57■■■■□ 3.61
USP42-202ENST00000404008 RGL2O15211 777 aa37.57■■■■□ 3.61
USP42-202ENST00000404008 RARSP54136 660 aaKnown RBP37.57■■■■□ 3.61
USP42-202ENST00000404008 MRPL50Q8N5N7 158 aaKnown RBP37.57■■■■□ 3.61
USP42-202ENST00000404008 ZBTB3Q9H5J0 574 aa37.57■■■■□ 3.61
USP42-202ENST00000404008 ANKRD36CQ5JPF3 1778 aa37.57■■■■□ 3.6
USP42-202ENST00000404008 FKBP8Q14318 412 aa37.56■■■■□ 3.6
USP42-202ENST00000404008 MSL1Q68DK7 614 aa37.56■■■■□ 3.6
USP42-202ENST00000404008 FLIIQ13045 1269 aa37.55■■■■□ 3.6
USP42-202ENST00000404008 NLGN1Q8N2Q7 840 aa37.55■■■■□ 3.6
USP42-202ENST00000404008 BCL2L13Q9BXK5 485 aa37.55■■■■□ 3.6
USP42-202ENST00000404008 HLFQ16534 295 aa37.55■■■■□ 3.6
USP42-202ENST00000404008 SMC4Q9NTJ3 1288 aa37.55■■■■□ 3.6
USP42-202ENST00000404008 CLEC4GQ6UXB4 293 aa37.54■■■■□ 3.6
USP42-202ENST00000404008 ANKRD13DQ6ZTN6 518 aa37.54■■■■□ 3.6
USP42-202ENST00000404008 PLBD2Q8NHP8 589 aa37.54■■■■□ 3.6
USP42-202ENST00000404008 ZNF652Q9Y2D9 606 aa37.54■■■■□ 3.6
USP42-202ENST00000404008 ATF5Q9Y2D1 282 aaPredicted RBP37.53■■■■□ 3.6
USP42-202ENST00000404008 DDX58O95786 925 aaKnown RBP37.51■■■■□ 3.59
USP42-202ENST00000404008 GIGYF2Q6Y7W6 1299 aaKnown RBP37.5■■■■□ 3.59
USP42-202ENST00000404008 BRPF1P55201 1214 aaPredicted RBP37.49■■■■□ 3.59
USP42-202ENST00000404008 ATP10DQ9P241 1426 aa37.48■■■■□ 3.59
USP42-202ENST00000404008 FKBP5Q13451 457 aaPredicted RBP37.48■■■■□ 3.59
USP42-202ENST00000404008 TBC1D9BQ66K14 1250 aa37.48■■■■□ 3.59
USP42-202ENST00000404008 ADCY9O60503 1353 aa37.48■■■■□ 3.59
USP42-202ENST00000404008 SPON1Q9HCB6 807 aa37.47■■■■□ 3.59
USP42-202ENST00000404008 TM4SF1P30408 202 aa37.46■■■■□ 3.59
USP42-202ENST00000404008 KSR2Q6VAB6 950 aa37.46■■■■□ 3.59
USP42-202ENST00000404008 RIC3Q7Z5B4 369 aa37.46■■■■□ 3.59
USP42-202ENST00000404008 SGIP1Q9BQI5 828 aa37.46■■■■□ 3.59
USP42-202ENST00000404008 PI4KAP2A4QPH2 592 aa37.45■■■■□ 3.59
USP42-202ENST00000404008 NFIXQ14938 502 aa37.45■■■■□ 3.59
USP42-202ENST00000404008 PI4KAP1Q8N8J0 262 aa37.45■■■■□ 3.59
USP42-202ENST00000404008 BCAR3O75815 825 aa37.44■■■■□ 3.58
USP42-202ENST00000404008 MMP10P09238 476 aa37.44■■■■□ 3.58
USP42-202ENST00000404008 PTGER2P43116 358 aa37.44■■■■□ 3.58
USP42-202ENST00000404008 AFDNP55196 1824 aaKnown RBP37.44■■■■□ 3.58
USP42-202ENST00000404008 MAP3K2Q9Y2U5 619 aa37.43■■■■□ 3.58
USP42-202ENST00000404008 PTPRCP08575 1304 aa37.43■■■■□ 3.58
USP42-202ENST00000404008 HSP90AB3PQ58FF7 597 aa37.42■■■■□ 3.58
USP42-202ENST00000404008 BICDL1Q6ZP65 573 aa37.42■■■■□ 3.58
USP42-202ENST00000404008 LRP5O75197 1615 aa37.42■■■■□ 3.58
USP42-202ENST00000404008 DDR1Q08345 913 aa37.42■■■■□ 3.58
USP42-202ENST00000404008 NRXN2Q9P2S2 1712 aa37.41■■■■□ 3.58
USP42-202ENST00000404008 POLD1P28340 1107 aa37.41■■■■□ 3.58
USP42-202ENST00000404008 TCIRG1Q13488 830 aa37.41■■■■□ 3.58
USP42-202ENST00000404008 ZNF34Q8IZ26 560 aa37.41■■■■□ 3.58
USP42-202ENST00000404008 SETDB2Q96T68 719 aa37.41■■■■□ 3.58
USP42-202ENST00000404008 NIP7Q9Y221 180 aaKnown RBP eCLIP37.41■■■■□ 3.58
USP42-202ENST00000404008 KIF16BQ96L93 1317 aa37.4■■■■□ 3.58
USP42-202ENST00000404008 RCAN3Q9UKA8 241 aa37.4■■■■□ 3.58
USP42-202ENST00000404008 SRCAPQ6ZRS2 3230 aa37.4■■■■□ 3.58
USP42-202ENST00000404008 CARMIL3Q8ND23 1372 aa37.39■■■■□ 3.58
USP42-202ENST00000404008 POLRMTO00411 1230 aaKnown RBP37.39■■■■□ 3.58
USP42-202ENST00000404008 METTL22Q9BUU2 404 aaPredicted RBP37.39■■■■□ 3.58
USP42-202ENST00000404008 NOB1Q9ULX3 412 aaKnown RBP37.39■■■■□ 3.58
USP42-202ENST00000404008 PARP3Q9Y6F1 533 aa37.38■■■■□ 3.57
USP42-202ENST00000404008 GPTP24298 496 aa37.37■■■■□ 3.57
USP42-202ENST00000404008 DNAAF4Q8WXU2 420 aa37.37■■■■□ 3.57
USP42-202ENST00000404008 UBN2Q6ZU65 1347 aa37.37■■■■□ 3.57
USP42-202ENST00000404008 F6X3S4 739 aa37.36■■■■□ 3.57
USP42-202ENST00000404008 MYD88Q99836 296 aa37.35■■■■□ 3.57
USP42-202ENST00000404008 ISCA1Q9BUE6 129 aa37.35■■■■□ 3.57
USP42-202ENST00000404008 N4BP2Q86UW6 1770 aaPredicted RBP37.34■■■■□ 3.57
USP42-202ENST00000404008 ATP5J2-PTCD1G3V325 749 aa37.32■■■■□ 3.57
USP42-202ENST00000404008 SERPINB2P05120 415 aa37.32■■■■□ 3.57
USP42-202ENST00000404008 PARP10Q53GL7 1025 aa37.32■■■■□ 3.57
USP42-202ENST00000404008 ARHGAP45Q92619 1136 aa37.32■■■■□ 3.57
USP42-202ENST00000404008 NEXNQ0ZGT2 675 aa37.31■■■■□ 3.56
USP42-202ENST00000404008 TRIM28Q13263 835 aaKnown RBP37.31■■■■□ 3.56
USP42-202ENST00000404008 NLRP10Q86W26 655 aa37.31■■■■□ 3.56
USP42-202ENST00000404008 FRAT1Q92837 279 aaPredicted RBP37.3■■■■□ 3.56
USP42-202ENST00000404008 PXDNLA1KZ92 1463 aa37.3■■■■□ 3.56
USP42-202ENST00000404008 IPO8O15397 1037 aaKnown RBP37.29■■■■□ 3.56
USP42-202ENST00000404008 IGKV5-2P06315 115 aa37.29■■■■□ 3.56
USP42-202ENST00000404008 IBTKQ9P2D0 1353 aaPredicted RBP37.29■■■■□ 3.56
USP42-202ENST00000404008 KIF13BQ9NQT8 1826 aa37.29■■■■□ 3.56
USP42-202ENST00000404008 SUSD4Q5VX71 490 aa37.29■■■■□ 3.56
USP42-202ENST00000404008 NBPF5PQ86XG9 351 aaPredicted RBP37.29■■■■□ 3.56
USP42-202ENST00000404008 API5Q9BZZ5 524 aaKnown RBP37.29■■■■□ 3.56
USP42-202ENST00000404008 FAM177BA6PVY3 158 aa37.26■■■■□ 3.55
USP42-202ENST00000404008 BEND3Q5T5X7 828 aa37.26■■■■□ 3.55
USP42-202ENST00000404008 SLC4A10Q6U841 1118 aa37.26■■■■□ 3.55
USP42-202ENST00000404008 ATF7IPQ6VMQ6 1270 aa37.26■■■■□ 3.55
USP42-202ENST00000404008 PPP1R42Q7Z4L9 355 aa37.26■■■■□ 3.55
USP42-202ENST00000404008 CCDC191Q8NCU4 936 aa37.26■■■■□ 3.55
USP42-202ENST00000404008 LINS1Q8NG48 757 aa37.26■■■■□ 3.55
USP42-202ENST00000404008 NYXQ9GZU5 481 aa37.26■■■■□ 3.55
USP42-202ENST00000404008 NTSR2O95665 410 aa37.25■■■■□ 3.55
USP42-202ENST00000404008 CWF19L2Q2TBE0 894 aaKnown RBP37.25■■■■□ 3.55
USP42-202ENST00000404008 ZKSCAN2Q63HK3 967 aa37.25■■■■□ 3.55
USP42-202ENST00000404008 PRR5LQ6MZQ0 368 aa37.25■■■■□ 3.55
USP42-202ENST00000404008 CNBD1Q8NA66 436 aa37.25■■■■□ 3.55
Retrieved 100 of 20,778 RNA–protein pairs in 23 ms