RNA–Protein interactions for RNA: ENST00000399903.6

PTPRA-205, Transcript of protein tyrosine phosphatase, receptor type A, humanhuman

TSL 5 BASIC

Gene PTPRA, Length 3,337 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPRA-205ENST00000399903 PTCH1Q13635 1447 aa20.37■□□□□ 0.85
PTPRA-205ENST00000399903 HMMRO75330 724 aa20.37■□□□□ 0.85
PTPRA-205ENST00000399903 UBE2HP62256 183 aa20.37■□□□□ 0.85
PTPRA-205ENST00000399903 IL17REQ8NFR9 667 aa20.37■□□□□ 0.85
PTPRA-205ENST00000399903 ANKRD7Q92527 254 aa20.37■□□□□ 0.85
PTPRA-205ENST00000399903 CUL4AQ13619 759 aa20.37■□□□□ 0.85
PTPRA-205ENST00000399903 NBPF6Q5VWK0 638 aa20.37■□□□□ 0.85
PTPRA-205ENST00000399903 NBPF4Q96M43 638 aa20.37■□□□□ 0.85
PTPRA-205ENST00000399903 EIF2S2P20042 333 aaKnown RBP20.36■□□□□ 0.85
PTPRA-205ENST00000399903 CHMP4AQ9BY43 222 aa20.36■□□□□ 0.85
PTPRA-205ENST00000399903 IGSF1Q8N6C5 1336 aa20.36■□□□□ 0.85
PTPRA-205ENST00000399903 FEZ1Q99689 392 aa20.35■□□□□ 0.85
PTPRA-205ENST00000399903 IL1RAPL2Q9NP60 686 aa20.35■□□□□ 0.85
PTPRA-205ENST00000399903 PIK3R4Q99570 1358 aa20.35■□□□□ 0.85
PTPRA-205ENST00000399903 STX6O43752 255 aa20.35■□□□□ 0.85
PTPRA-205ENST00000399903 MSH6P52701 1360 aa20.35■□□□□ 0.85
PTPRA-205ENST00000399903 ANXA1P04083 346 aa20.35■□□□□ 0.85
PTPRA-205ENST00000399903 ZSCAN22P10073 491 aaPredicted RBP20.35■□□□□ 0.85
PTPRA-205ENST00000399903 SYT1P21579 422 aa20.35■□□□□ 0.85
PTPRA-205ENST00000399903 BRPF1P55201 1214 aaPredicted RBP20.34■□□□□ 0.85
PTPRA-205ENST00000399903 LGR6Q9HBX8 967 aa20.34■□□□□ 0.85
PTPRA-205ENST00000399903 NRKQ7Z2Y5 1582 aa20.34■□□□□ 0.85
PTPRA-205ENST00000399903 TCHHQ07283 1943 aa20.34■□□□□ 0.85
PTPRA-205ENST00000399903 GNAT3A8MTJ3 354 aa20.34■□□□□ 0.85
PTPRA-205ENST00000399903 CCDC192P0DO97 292 aa20.34■□□□□ 0.85
PTPRA-205ENST00000399903 FAM173BQ6P4H8 233 aa20.34■□□□□ 0.85
PTPRA-205ENST00000399903 INTS4Q96HW7 963 aaKnown RBP20.34■□□□□ 0.85
PTPRA-205ENST00000399903 CRB1P82279 1406 aa20.34■□□□□ 0.85
PTPRA-205ENST00000399903 UNC5CLQ8IV45 518 aa20.33■□□□□ 0.85
PTPRA-205ENST00000399903 CCDC83Q8IWF9 413 aa20.33■□□□□ 0.85
PTPRA-205ENST00000399903 TOPAZ1Q8N9V7 1692 aa20.33■□□□□ 0.85
PTPRA-205ENST00000399903 GOLGA6L4A6NEF3 574 aa20.33■□□□□ 0.84
PTPRA-205ENST00000399903 CTNNA3Q9UI47 895 aa20.33■□□□□ 0.84
PTPRA-205ENST00000399903 ZC3H6P61129 1189 aaKnown RBP20.32■□□□□ 0.84
PTPRA-205ENST00000399903 PROSER2Q86WR7 435 aaPredicted RBP20.32■□□□□ 0.84
PTPRA-205ENST00000399903 ST7Q9NRC1 585 aa20.32■□□□□ 0.84
PTPRA-205ENST00000399903 ARHGEF10O15013 1369 aa20.32■□□□□ 0.84
PTPRA-205ENST00000399903 KCNQ3O43525 872 aa20.32■□□□□ 0.84
PTPRA-205ENST00000399903 CHMLP26374 656 aa20.31■□□□□ 0.84
PTPRA-205ENST00000399903 TAF3Q5VWG9 929 aa20.31■□□□□ 0.84
PTPRA-205ENST00000399903 MPRIPQ6WCQ1 1025 aa20.31■□□□□ 0.84
PTPRA-205ENST00000399903 TRMT1Q9NXH9 659 aaKnown RBP20.31■□□□□ 0.84
PTPRA-205ENST00000399903 NUTM1Q86Y26 1132 aa20.3■□□□□ 0.84
PTPRA-205ENST00000399903 PIK3C2AO00443 1686 aa20.3■□□□□ 0.84
PTPRA-205ENST00000399903 IL25Q9H293 177 aa20.3■□□□□ 0.84
PTPRA-205ENST00000399903 F13A1P00488 732 aa20.3■□□□□ 0.84
PTPRA-205ENST00000399903 TPM3P06753 285 aa20.29■□□□□ 0.84
PTPRA-205ENST00000399903 FBXW7Q969H0 707 aa20.29■□□□□ 0.84
PTPRA-205ENST00000399903 STK31Q9BXU1 1019 aa20.29■□□□□ 0.84
PTPRA-205ENST00000399903 CTIFO43310 598 aaKnown RBP20.29■□□□□ 0.84
PTPRA-205ENST00000399903 IRX5P78411 483 aaPredicted RBP20.29■□□□□ 0.84
PTPRA-205ENST00000399903 RTL1A6NKG5 1358 aa20.29■□□□□ 0.84
PTPRA-205ENST00000399903 AK2P54819 239 aa20.29■□□□□ 0.84
PTPRA-205ENST00000399903 LRRCC1Q9C099 1032 aa20.29■□□□□ 0.84
PTPRA-205ENST00000399903 SLFN14P0C7P3 912 aa20.28■□□□□ 0.84
PTPRA-205ENST00000399903 PHAXQ9H814 394 aaKnown RBP20.28■□□□□ 0.84
PTPRA-205ENST00000399903 ATP6V1DQ9Y5K8 247 aa20.28■□□□□ 0.84
PTPRA-205ENST00000399903 CCDC66A2RUB6 948 aa20.28■□□□□ 0.84
PTPRA-205ENST00000399903 SMTNL1A8MU46 457 aa20.28■□□□□ 0.84
PTPRA-205ENST00000399903 ANO6Q4KMQ2 910 aa20.27■□□□□ 0.84
PTPRA-205ENST00000399903 CABLES1Q8TDN4 633 aa20.27■□□□□ 0.84
PTPRA-205ENST00000399903 SYTL4Q96C24 671 aaPredicted RBP20.27■□□□□ 0.84
PTPRA-205ENST00000399903 TFIP11Q9UBB9 837 aaKnown RBP20.27■□□□□ 0.84
PTPRA-205ENST00000399903 SPG7Q9UQ90 795 aa20.27■□□□□ 0.84
PTPRA-205ENST00000399903 GJB2P29033 226 aa20.27■□□□□ 0.84
PTPRA-205ENST00000399903 HSPA2P54652 639 aa20.27■□□□□ 0.84
PTPRA-205ENST00000399903 KRT222Q8N1A0 295 aa20.27■□□□□ 0.84
PTPRA-205ENST00000399903 NUP62CLQ9H1M0 184 aa20.27■□□□□ 0.83
PTPRA-205ENST00000399903 DDX41Q9UJV9 622 aaKnown RBP20.27■□□□□ 0.83
PTPRA-205ENST00000399903 RGS12O14924 1447 aa20.26■□□□□ 0.83
PTPRA-205ENST00000399903 NECAB1Q8N987 351 aa20.26■□□□□ 0.83
PTPRA-205ENST00000399903 KDRP35968 1356 aa20.26■□□□□ 0.83
PTPRA-205ENST00000399903 GCP02774 474 aa20.26■□□□□ 0.83
PTPRA-205ENST00000399903 GABPB1Q06547 395 aaPredicted RBP20.26■□□□□ 0.83
PTPRA-205ENST00000399903 FLIIQ13045 1269 aa20.26■□□□□ 0.83
PTPRA-205ENST00000399903 MAP3K11Q16584 847 aa20.26■□□□□ 0.83
PTPRA-205ENST00000399903 CASTP20810 708 aaKnown RBP20.25■□□□□ 0.83
PTPRA-205ENST00000399903 TYRO3Q06418 890 aa20.25■□□□□ 0.83
PTPRA-205ENST00000399903 CEP135Q66GS9 1140 aa20.25■□□□□ 0.83
PTPRA-205ENST00000399903 FILIP1Q7Z7B0 1213 aa20.25■□□□□ 0.83
PTPRA-205ENST00000399903 KIF18AQ8NI77 898 aa20.25■□□□□ 0.83
PTPRA-205ENST00000399903 FAM200AQ8TCP9 573 aa20.25■□□□□ 0.83
PTPRA-205ENST00000399903 TNMDQ9H2S6 317 aa20.25■□□□□ 0.83
PTPRA-205ENST00000399903 ZNF215Q9UL58 517 aaPredicted RBP20.25■□□□□ 0.83
PTPRA-205ENST00000399903 AXIN2Q9Y2T1 843 aa20.25■□□□□ 0.83
PTPRA-205ENST00000399903 ZSCAN21Q9Y5A6 473 aaPredicted RBP20.25■□□□□ 0.83
PTPRA-205ENST00000399903 TIGD1Q96MW7 591 aa20.25■□□□□ 0.83
PTPRA-205ENST00000399903 CLIP2Q9UDT6 1046 aa20.25■□□□□ 0.83
PTPRA-205ENST00000399903 LIG1P18858 919 aa20.25■□□□□ 0.83
PTPRA-205ENST00000399903 TERF2Q15554 542 aa20.25■□□□□ 0.83
PTPRA-205ENST00000399903 ELF2Q15723 593 aa20.25■□□□□ 0.83
PTPRA-205ENST00000399903 CWC27Q6UX04 472 aaKnown RBP20.25■□□□□ 0.83
PTPRA-205ENST00000399903 IP6K1Q92551 441 aa20.25■□□□□ 0.83
PTPRA-205ENST00000399903 RPAP1Q9BWH6 1393 aaPredicted RBP20.25■□□□□ 0.83
PTPRA-205ENST00000399903 LARGE1O95461 756 aa20.24■□□□□ 0.83
PTPRA-205ENST00000399903 ARID5BQ14865 1188 aa20.24■□□□□ 0.83
PTPRA-205ENST00000399903 ZNF530Q6P9A1 599 aaPredicted RBP20.24■□□□□ 0.83
PTPRA-205ENST00000399903 ATP10DQ9P241 1426 aa20.24■□□□□ 0.83
PTPRA-205ENST00000399903 TAF7Q15545 349 aaPredicted RBP20.24■□□□□ 0.83
PTPRA-205ENST00000399903 HDGFL1Q5TGJ6 251 aa20.24■□□□□ 0.83
Retrieved 100 of 20,778 RNA–protein pairs in 87.4 ms