RNA–Protein interactions for RNA: ENST00000397102.5

SEC13-206, Transcript of SEC13 homolog, nuclear pore and COPII coat complex component, humanhuman

TSL 3

Gene SEC13, Length 582 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SEC13-206ENST00000397102 L3MBTL3Q96JM7 780 aaPredicted RBP20.27■□□□□ 0.84
SEC13-206ENST00000397102 SETDB2Q96T68 719 aa20.27■□□□□ 0.84
SEC13-206ENST00000397102 NPHP1O15259 732 aa20.26■□□□□ 0.83
SEC13-206ENST00000397102 TEFQ10587 303 aa20.26■□□□□ 0.83
SEC13-206ENST00000397102 CAMTA2O94983 1202 aa20.25■□□□□ 0.83
SEC13-206ENST00000397102 NPM2Q86SE8 214 aaKnown RBP20.25■□□□□ 0.83
SEC13-206ENST00000397102 TAF1DQ9H5J8 278 aaPredicted RBP20.25■□□□□ 0.83
SEC13-206ENST00000397102 ADAMTSL1Q8N6G6 1762 aa20.23■□□□□ 0.83
SEC13-206ENST00000397102 A1BGP04217 495 aa20.23■□□□□ 0.83
SEC13-206ENST00000397102 CTCFP49711 727 aaPredicted RBP20.23■□□□□ 0.83
SEC13-206ENST00000397102 IL17REQ8NFR9 667 aa20.23■□□□□ 0.83
SEC13-206ENST00000397102 AIDAQ96BJ3 306 aa20.23■□□□□ 0.83
SEC13-206ENST00000397102 FMNL2Q96PY5 1086 aa20.23■□□□□ 0.83
SEC13-206ENST00000397102 TMEM88BA6NKF7 163 aa20.22■□□□□ 0.83
SEC13-206ENST00000397102 GNAT3A8MTJ3 354 aa20.22■□□□□ 0.83
SEC13-206ENST00000397102 VEGFBP49765 207 aa20.22■□□□□ 0.83
SEC13-206ENST00000397102 CCDC93Q567U6 631 aa20.22■□□□□ 0.83
SEC13-206ENST00000397102 GAS2L2Q8NHY3 880 aa20.22■□□□□ 0.83
SEC13-206ENST00000397102 ITGBL1O95965 494 aaPredicted RBP20.21■□□□□ 0.83
SEC13-206ENST00000397102 DZIP3Q86Y13 1208 aaKnown RBP20.21■□□□□ 0.83
SEC13-206ENST00000397102 C7orf43Q8WVR3 580 aa20.21■□□□□ 0.83
SEC13-206ENST00000397102 COL3A1P02461 1466 aaPredicted RBP20.2■□□□□ 0.82
SEC13-206ENST00000397102 FKBP4Q02790 459 aaKnown RBP eCLIP20.19■□□□□ 0.82
SEC13-206ENST00000397102 WBP1LQ9NX94 342 aa20.19■□□□□ 0.82
SEC13-206ENST00000397102 HACL1Q9UJ83 578 aa20.19■□□□□ 0.82
SEC13-206ENST00000397102 CEMIPQ8WUJ3 1361 aa20.19■□□□□ 0.82
SEC13-206ENST00000397102 NPR1P16066 1061 aa20.18■□□□□ 0.82
SEC13-206ENST00000397102 EAPPQ56P03 285 aaPredicted RBP20.18■□□□□ 0.82
SEC13-206ENST00000397102 CLEC4GQ6UXB4 293 aa20.18■□□□□ 0.82
SEC13-206ENST00000397102 NBPF5PQ86XG9 351 aaPredicted RBP20.18■□□□□ 0.82
SEC13-206ENST00000397102 ZNF541Q9H0D2 1346 aa20.18■□□□□ 0.82
SEC13-206ENST00000397102 KLRG2A4D1S0 409 aaPredicted RBP20.16■□□□□ 0.82
SEC13-206ENST00000397102 EPHX2P34913 555 aa20.16■□□□□ 0.82
SEC13-206ENST00000397102 LBX1P52954 281 aa20.16■□□□□ 0.82
SEC13-206ENST00000397102 ZNF277Q9NRM2 450 aaPredicted RBP20.16■□□□□ 0.82
SEC13-206ENST00000397102 CLEC11AQ9Y240 323 aa20.16■□□□□ 0.82
SEC13-206ENST00000397102 ZNF652Q9Y2D9 606 aa20.16■□□□□ 0.82
SEC13-206ENST00000397102 RASSF10A6NK89 507 aa20.15■□□□□ 0.82
SEC13-206ENST00000397102 BTBD11A6QL63 1104 aa20.15■□□□□ 0.82
SEC13-206ENST00000397102 U2SURPO15042 1029 aaKnown RBP20.15■□□□□ 0.82
SEC13-206ENST00000397102 PER1O15534 1290 aaPredicted RBP20.15■□□□□ 0.82
SEC13-206ENST00000397102 KCNQ3O43525 872 aa20.15■□□□□ 0.82
SEC13-206ENST00000397102 CC2D1BQ5T0F9 858 aaKnown RBP20.15■□□□□ 0.82
SEC13-206ENST00000397102 PNMA8AQ86V59 439 aaPredicted RBP20.15■□□□□ 0.82
SEC13-206ENST00000397102 RTKN2Q8IZC4 609 aa20.15■□□□□ 0.82
SEC13-206ENST00000397102 USP16Q9Y5T5 823 aa20.15■□□□□ 0.82
SEC13-206ENST00000397102 KIF7Q2M1P5 1343 aa20.14■□□□□ 0.81
SEC13-206ENST00000397102 DEFB115Q30KQ5 88 aa20.14■□□□□ 0.81
SEC13-206ENST00000397102 RNF123Q5XPI4 1314 aa20.13■□□□□ 0.81
SEC13-206ENST00000397102 FZD9O00144 591 aa20.13■□□□□ 0.81
SEC13-206ENST00000397102 RGL2O15211 777 aa20.13■□□□□ 0.81
SEC13-206ENST00000397102 PIP4K2AP48426 406 aaPredicted RBP20.13■□□□□ 0.81
SEC13-206ENST00000397102 TPTE2Q6XPS3 522 aa20.13■□□□□ 0.81
SEC13-206ENST00000397102 CNTROBQ8N137 903 aa20.13■□□□□ 0.81
SEC13-206ENST00000397102 PCGF6Q9BYE7 350 aa20.13■□□□□ 0.81
SEC13-206ENST00000397102 HSPA8P11142 646 aaKnown RBP20.12■□□□□ 0.81
SEC13-206ENST00000397102 IARSP41252 1262 aaKnown RBP20.12■□□□□ 0.81
SEC13-206ENST00000397102 MAP2K1Q02750 393 aaPredicted RBP20.11■□□□□ 0.81
SEC13-206ENST00000397102 MAP1SQ66K74 1059 aaPredicted RBP20.11■□□□□ 0.81
SEC13-206ENST00000397102 OLFM4Q6UX06 510 aa20.11■□□□□ 0.81
SEC13-206ENST00000397102 GPC2Q8N158 579 aa20.11■□□□□ 0.81
SEC13-206ENST00000397102 NIP7Q9Y221 180 aaKnown RBP eCLIP20.11■□□□□ 0.81
SEC13-206ENST00000397102 THSD7BQ9C0I4 1608 aa20.11■□□□□ 0.81
SEC13-206ENST00000397102 WDR33Q9C0J8 1336 aaKnown RBP20.1■□□□□ 0.81
SEC13-206ENST00000397102 ALDH1B1P30837 517 aa20.1■□□□□ 0.81
SEC13-206ENST00000397102 ABHD8Q96I13 439 aa20.1■□□□□ 0.81
SEC13-206ENST00000397102 SNED1Q8TER0 1413 aa20.1■□□□□ 0.81
SEC13-206ENST00000397102 NPC1L1Q9UHC9 1359 aa20.09■□□□□ 0.81
SEC13-206ENST00000397102 PRAMEF22A3QJZ6 481 aa20.09■□□□□ 0.81
SEC13-206ENST00000397102 SNRPA1P09661 255 aaKnown RBP20.09■□□□□ 0.81
SEC13-206ENST00000397102 SYNE4Q8N205 404 aa20.09■□□□□ 0.81
SEC13-206ENST00000397102 SLC34A2O95436 690 aa20.08■□□□□ 0.81
SEC13-206ENST00000397102 PHACTR3Q96KR7 559 aa20.08■□□□□ 0.81
SEC13-206ENST00000397102 PSMD1Q99460 953 aa20.08■□□□□ 0.81
SEC13-206ENST00000397102 ABT1Q9ULW3 272 aaKnown RBP20.08■□□□□ 0.81
SEC13-206ENST00000397102 LTBP1Q14766 1721 aa20.07■□□□□ 0.8
SEC13-206ENST00000397102 PRKAR2BP31323 418 aa20.07■□□□□ 0.8
SEC13-206ENST00000397102 JDP2Q8WYK2 163 aa20.07■□□□□ 0.8
SEC13-206ENST00000397102 FAM177BA6PVY3 158 aa20.06■□□□□ 0.8
SEC13-206ENST00000397102 NBPF26B4DH59 902 aa20.06■□□□□ 0.8
SEC13-206ENST00000397102 NBPF10Q6P3W6 841 aaKnown RBP20.06■□□□□ 0.8
SEC13-206ENST00000397102 NBPF15Q8N660 670 aa20.06■□□□□ 0.8
SEC13-206ENST00000397102 TRPM7Q96QT4 1865 aa20.06■□□□□ 0.8
SEC13-206ENST00000397102 DDX21Q9NR30 783 aaKnown RBP eCLIP20.06■□□□□ 0.83e-7■■■□□ 17.1
SEC13-206ENST00000397102 LAMB4A4D0S4 1761 aa20.06■□□□□ 0.8
SEC13-206ENST00000397102 EIF6P56537 245 aaKnown RBP20.05■□□□□ 0.8
SEC13-206ENST00000397102 FAM161AQ3B820 660 aa20.05■□□□□ 0.8
SEC13-206ENST00000397102 RSPH6AQ9H0K4 717 aa20.05■□□□□ 0.8
SEC13-206ENST00000397102 COL4A5P29400 1685 aa20.04■□□□□ 0.8
SEC13-206ENST00000397102 GTF2E1P29083 439 aaPredicted RBP20.04■□□□□ 0.8
SEC13-206ENST00000397102 LMOD1P29536 600 aaPredicted RBP20.04■□□□□ 0.8
SEC13-206ENST00000397102 CC2D2BQ6DHV5 1058 aa20.04■□□□□ 0.8
SEC13-206ENST00000397102 HLFQ16534 295 aa20.03■□□□□ 0.8
SEC13-206ENST00000397102 CRY2Q49AN0 593 aa20.03■□□□□ 0.8
SEC13-206ENST00000397102 RTF1Q92541 710 aaKnown RBP20.03■□□□□ 0.8
SEC13-206ENST00000397102 NUP98P52948 1817 aa20.03■□□□□ 0.8
SEC13-206ENST00000397102 ECE1P42892 770 aa20.02■□□□□ 0.8
SEC13-206ENST00000397102 CAPNS2Q96L46 248 aa20.02■□□□□ 0.8
SEC13-206ENST00000397102 NYXQ9GZU5 481 aa20.02■□□□□ 0.8
SEC13-206ENST00000397102 GJA3Q9Y6H8 435 aa20.02■□□□□ 0.8
Retrieved 100 of 20,778 RNA–protein pairs in 86.3 ms