RNA–Protein interactions for RNA: ENST00000396578.7

COL4A3-202, Transcript of collagen type IV alpha 3 chain, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene COL4A3, Length 8,097 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL4A3-202ENST00000396578 SLC12A5Q9H2X9 1139 aa16.06■□□□□ 0.16
COL4A3-202ENST00000396578 TCP11L1Q9NUJ3 509 aa16.06■□□□□ 0.16
COL4A3-202ENST00000396578 FCHSD2O94868 740 aa16.06■□□□□ 0.16
COL4A3-202ENST00000396578 BAG4O95429 457 aaKnown RBP16.05■□□□□ 0.16
COL4A3-202ENST00000396578 NLRP5P59047 1200 aa16.05■□□□□ 0.16
COL4A3-202ENST00000396578 CCDC40Q4G0X9 1142 aa16.05■□□□□ 0.16
COL4A3-202ENST00000396578 BOLA2Q9H3K6 86 aa16.05■□□□□ 0.16
COL4A3-202ENST00000396578 TTC21AQ8NDW8 1320 aa16.05■□□□□ 0.16
COL4A3-202ENST00000396578 STXBP4Q6ZWJ1 553 aa16.05■□□□□ 0.16
COL4A3-202ENST00000396578 CCDC160A6NGH7 325 aa16.05■□□□□ 0.16
COL4A3-202ENST00000396578 ACTN2P35609 894 aa16.05■□□□□ 0.16
COL4A3-202ENST00000396578 ZNF165P49910 485 aa16.05■□□□□ 0.16
COL4A3-202ENST00000396578 NOL12Q9UGY1 213 aaKnown RBP eCLIP16.05■□□□□ 0.16
COL4A3-202ENST00000396578 V9GYY5 206 aaPredicted RBP16.05■□□□□ 0.16
COL4A3-202ENST00000396578 EHBP1L1Q8N3D4 1523 aa16.05■□□□□ 0.16
COL4A3-202ENST00000396578 PABPN1LA6NDY0 278 aaKnown RBP16.05■□□□□ 0.16
COL4A3-202ENST00000396578 GOLIM4O00461 696 aa16.05■□□□□ 0.16
COL4A3-202ENST00000396578 CCDC172P0C7W6 258 aa16.05■□□□□ 0.16
COL4A3-202ENST00000396578 RNF41Q9H4P4 317 aaPredicted RBP16.05■□□□□ 0.16
COL4A3-202ENST00000396578 MXRA7P84157 204 aa16.05■□□□□ 0.16
COL4A3-202ENST00000396578 NFE2L2Q16236 605 aa16.05■□□□□ 0.16
COL4A3-202ENST00000396578 CRACR2BQ8N4Y2 399 aaPredicted RBP16.05■□□□□ 0.16
COL4A3-202ENST00000396578 BIN1O00499 593 aa16.05■□□□□ 0.16
COL4A3-202ENST00000396578 STX6O43752 255 aa16.05■□□□□ 0.16
COL4A3-202ENST00000396578 STMN4Q9H169 189 aaPredicted RBP16.05■□□□□ 0.16
COL4A3-202ENST00000396578 LIG1P18858 919 aa16.04■□□□□ 0.16
COL4A3-202ENST00000396578 SLFN5Q08AF3 891 aa16.04■□□□□ 0.16
COL4A3-202ENST00000396578 TCERG1LQ5VWI1 586 aa16.04■□□□□ 0.16
COL4A3-202ENST00000396578 SELENOOQ9BVL4 669 aa16.04■□□□□ 0.16
COL4A3-202ENST00000396578 KIAA1107Q9UPP5 1409 aa16.04■□□□□ 0.16
COL4A3-202ENST00000396578 IFIT1P09914 478 aaKnown RBP16.04■□□□□ 0.16
COL4A3-202ENST00000396578 MAP3K12Q12852 859 aa16.04■□□□□ 0.16
COL4A3-202ENST00000396578 IQCGQ9H095 443 aaKnown RBP16.04■□□□□ 0.16
COL4A3-202ENST00000396578 RASAL2Q9UJF2 1139 aa16.04■□□□□ 0.16
COL4A3-202ENST00000396578 GJB2P29033 226 aa16.04■□□□□ 0.16
COL4A3-202ENST00000396578 STARD3NLO95772 234 aa16.04■□□□□ 0.16
COL4A3-202ENST00000396578 CABP1Q9NZU7 370 aa16.04■□□□□ 0.16
COL4A3-202ENST00000396578 SMARCA5O60264 1052 aaPredicted RBP16.03■□□□□ 0.16
COL4A3-202ENST00000396578 PAIP2Q9BPZ3 127 aaKnown RBP16.03■□□□□ 0.16
COL4A3-202ENST00000396578 CASKIN1Q8WXD9 1431 aa16.03■□□□□ 0.16
COL4A3-202ENST00000396578 CCDC96Q2M329 555 aa16.03■□□□□ 0.16
COL4A3-202ENST00000396578 ZNF444Q8N0Y2 327 aaPredicted RBP16.03■□□□□ 0.16
COL4A3-202ENST00000396578 TBC1D5Q92609 795 aa16.03■□□□□ 0.16
COL4A3-202ENST00000396578 DRC1Q96MC2 740 aa16.03■□□□□ 0.16
COL4A3-202ENST00000396578 HECW1Q76N89 1606 aa16.03■□□□□ 0.16
COL4A3-202ENST00000396578 RANBP6O60518 1105 aaKnown RBP16.03■□□□□ 0.16
COL4A3-202ENST00000396578 TMPOP42166 694 aaKnown RBP16.03■□□□□ 0.16
COL4A3-202ENST00000396578 ZSWIM4Q9H7M6 989 aa16.03■□□□□ 0.16
COL4A3-202ENST00000396578 RTEL1-TNFRSF6BF6WH68 1400 aa16.03■□□□□ 0.16
COL4A3-202ENST00000396578 DDX46Q7L014 1031 aaKnown RBP16.03■□□□□ 0.16
COL4A3-202ENST00000396578 ALDH1L2Q3SY69 923 aa16.03■□□□□ 0.16
COL4A3-202ENST00000396578 DZIP1Q86YF9 867 aaKnown RBP16.03■□□□□ 0.16
COL4A3-202ENST00000396578 TBC1D2Q9BYX2 928 aa16.03■□□□□ 0.16
COL4A3-202ENST00000396578 ZNF652Q9Y2D9 606 aa16.03■□□□□ 0.16
COL4A3-202ENST00000396578 UCHL5Q9Y5K5 329 aaKnown RBP eCLIP16.03■□□□□ 0.16
COL4A3-202ENST00000396578 OPA1O60313 960 aa16.02■□□□□ 0.16
COL4A3-202ENST00000396578 ATP2C2O75185 946 aa16.02■□□□□ 0.16
COL4A3-202ENST00000396578 CTAGE1Q96RT6 745 aa16.02■□□□□ 0.16
COL4A3-202ENST00000396578 PRC1O43663 620 aa16.02■□□□□ 0.16
COL4A3-202ENST00000396578 CCT2P78371 535 aaKnown RBP16.02■□□□□ 0.16
COL4A3-202ENST00000396578 SYCP3Q8IZU3 236 aa16.02■□□□□ 0.16
COL4A3-202ENST00000396578 PSMD1Q99460 953 aa16.02■□□□□ 0.16
COL4A3-202ENST00000396578 TTC12Q9H892 705 aaPredicted RBP16.02■□□□□ 0.16
COL4A3-202ENST00000396578 MYO1BO43795 1136 aa16.02■□□□□ 0.16
COL4A3-202ENST00000396578 SPTY2D1Q68D10 685 aaPredicted RBP16.02■□□□□ 0.16
COL4A3-202ENST00000396578 AEBP2Q6ZN18 517 aaPredicted RBP16.02■□□□□ 0.16
COL4A3-202ENST00000396578 SSX2IPQ9Y2D8 614 aa16.02■□□□□ 0.16
COL4A3-202ENST00000396578 IFIT3O14879 490 aaKnown RBP16.02■□□□□ 0.15
COL4A3-202ENST00000396578 ZWINTO95229 277 aa16.02■□□□□ 0.15
COL4A3-202ENST00000396578 ZSCAN23Q3MJ62 389 aa16.02■□□□□ 0.15
COL4A3-202ENST00000396578 NAP1L3Q99457 506 aaPredicted RBP16.02■□□□□ 0.15
COL4A3-202ENST00000396578 RSPH14Q9UHP6 348 aa16.02■□□□□ 0.15
COL4A3-202ENST00000396578 CTAGE9A4FU28 777 aa16.02■□□□□ 0.15
COL4A3-202ENST00000396578 GOLGA8AA7E2F4 631 aa16.02■□□□□ 0.15
COL4A3-202ENST00000396578 CCDC82Q8N4S0 544 aa16.02■□□□□ 0.15
COL4A3-202ENST00000396578 CCDC85AQ96PX6 553 aaPredicted RBP16.02■□□□□ 0.15
COL4A3-202ENST00000396578 HYPKQ9NX55 129 aa16.02■□□□□ 0.15
COL4A3-202ENST00000396578 UBASH3AP57075 661 aa16.01■□□□□ 0.15
COL4A3-202ENST00000396578 RMND1Q9NWS8 449 aa16.01■□□□□ 0.15
COL4A3-202ENST00000396578 MCM6Q14566 821 aa16.01■□□□□ 0.15
COL4A3-202ENST00000396578 RAB3IL1Q8TBN0 382 aa16.01■□□□□ 0.15
COL4A3-202ENST00000396578 LRRC27Q9C0I9 530 aa16.01■□□□□ 0.15
COL4A3-202ENST00000396578 NSD3Q9BZ95 1437 aa16■□□□□ 0.15
COL4A3-202ENST00000396578 KIF5BP33176 963 aa16■□□□□ 0.15
COL4A3-202ENST00000396578 ZSCAN16Q9H4T2 348 aaPredicted RBP16■□□□□ 0.15
COL4A3-202ENST00000396578 EXOC1Q9NV70 894 aa16■□□□□ 0.15
COL4A3-202ENST00000396578 DUSP27Q5VZP5 1158 aa16■□□□□ 0.15
COL4A3-202ENST00000396578 CCDC102BQ68D86 513 aa16■□□□□ 0.15
COL4A3-202ENST00000396578 LRRC45Q96CN5 670 aa16■□□□□ 0.15
COL4A3-202ENST00000396578 PIP4K2BP78356 416 aa16■□□□□ 0.15
COL4A3-202ENST00000396578 RRS1Q15050 365 aaKnown RBP16■□□□□ 0.15
COL4A3-202ENST00000396578 CYLC1P35663 651 aaPredicted RBP16■□□□□ 0.15
COL4A3-202ENST00000396578 TUBB4BP68371 445 aa16■□□□□ 0.15
COL4A3-202ENST00000396578 SEPT6Q14141 434 aa16■□□□□ 0.15
COL4A3-202ENST00000396578 TTC14Q96N46 770 aa16■□□□□ 0.15
COL4A3-202ENST00000396578 PUF60Q9UHX1 559 aaKnown RBP16■□□□□ 0.15
COL4A3-202ENST00000396578 ATAD2Q6PL18 1390 aa16■□□□□ 0.15
COL4A3-202ENST00000396578 ISM2Q6H9L7 571 aa15.99■□□□□ 0.15
COL4A3-202ENST00000396578 TXNDC2Q86VQ3 553 aa15.99■□□□□ 0.15
COL4A3-202ENST00000396578 GDPD2Q9HCC8 539 aa15.99■□□□□ 0.15
Retrieved 100 of 20,778 RNA–protein pairs in 11.4 ms