RNA–Protein interactions for RNA: ENST00000394991.7

SNCA-205, Transcript of synuclein alpha, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SNCA, Length 1,290 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Synapse .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SNCA-205ENST00000394991 PASKQ96RG2 1323 aa21.4■■□□□ 1.02
SNCA-205ENST00000394991 SETDB2Q96T68 719 aa21.4■■□□□ 1.02
SNCA-205ENST00000394991 GNAT3A8MTJ3 354 aa21.39■■□□□ 1.01
SNCA-205ENST00000394991 FOXN1O15353 648 aa21.39■■□□□ 1.01
SNCA-205ENST00000394991 PER1O15534 1290 aaPredicted RBP21.39■■□□□ 1.01
SNCA-205ENST00000394991 KCNQ3O43525 872 aa21.39■■□□□ 1.01
SNCA-205ENST00000394991 CC2D1BQ5T0F9 858 aaKnown RBP21.39■■□□□ 1.01
SNCA-205ENST00000394991 MASTLQ96GX5 879 aa21.39■■□□□ 1.01
SNCA-205ENST00000394991 CEMIPQ8WUJ3 1361 aa21.38■■□□□ 1.01
SNCA-205ENST00000394991 ST5P78524 1137 aa21.38■■□□□ 1.01
SNCA-205ENST00000394991 GAS2L2Q8NHY3 880 aa21.38■■□□□ 1.01
SNCA-205ENST00000394991 C7orf43Q8WVR3 580 aa21.38■■□□□ 1.01
SNCA-205ENST00000394991 FMNL2Q96PY5 1086 aa21.38■■□□□ 1.01
SNCA-205ENST00000394991 DZIP3Q86Y13 1208 aaKnown RBP21.37■■□□□ 1.01
SNCA-205ENST00000394991 L3MBTL3Q96JM7 780 aaPredicted RBP21.37■■□□□ 1.01
SNCA-205ENST00000394991 U2SURPO15042 1029 aaKnown RBP21.36■■□□□ 1.01
SNCA-205ENST00000394991 NPHP1O15259 732 aa21.36■■□□□ 1.01
SNCA-205ENST00000394991 PIP4K2AP48426 406 aaPredicted RBP21.36■■□□□ 1.01
SNCA-205ENST00000394991 SOGA3Q5TF21 947 aa21.36■■□□□ 1.01
SNCA-205ENST00000394991 LDHDQ86WU2 507 aa21.36■■□□□ 1.01
SNCA-205ENST00000394991 TAF1DQ9H5J8 278 aaPredicted RBP21.36■■□□□ 1.01
SNCA-205ENST00000394991 ZNF541Q9H0D2 1346 aa21.35■■□□□ 1.01
SNCA-205ENST00000394991 IQCA1LA6NCM1 817 aa21.34■■□□□ 1.01
SNCA-205ENST00000394991 CCDC93Q567U6 631 aa21.34■■□□□ 1.01
SNCA-205ENST00000394991 USP16Q9Y5T5 823 aa21.34■■□□□ 1.01
SNCA-205ENST00000394991 PRAMEF22A3QJZ6 481 aa21.33■■□□□ 1.01
SNCA-205ENST00000394991 ITGBL1O95965 494 aaPredicted RBP21.33■■□□□ 1.01
SNCA-205ENST00000394991 NPM2Q86SE8 214 aaKnown RBP21.33■■□□□ 1.01
SNCA-205ENST00000394991 VEGFBP49765 207 aa21.32■■□□□ 1
SNCA-205ENST00000394991 OLFM4Q6UX06 510 aa21.32■■□□□ 1
SNCA-205ENST00000394991 PRDM10Q9NQV6 1147 aa21.32■■□□□ 1
SNCA-205ENST00000394991 BTBD11A6QL63 1104 aa21.31■■□□□ 1
SNCA-205ENST00000394991 FKBP4Q02790 459 aaKnown RBP eCLIP21.31■■□□□ 1
SNCA-205ENST00000394991 NBPF5PQ86XG9 351 aaPredicted RBP21.31■■□□□ 1
SNCA-205ENST00000394991 PHACTR3Q96KR7 559 aa21.31■■□□□ 1
SNCA-205ENST00000394991 ZNF277Q9NRM2 450 aaPredicted RBP21.31■■□□□ 1
SNCA-205ENST00000394991 KLRG2A4D1S0 409 aaPredicted RBP21.3■■□□□ 1
SNCA-205ENST00000394991 TMEM88BA6NKF7 163 aa21.3■■□□□ 1
SNCA-205ENST00000394991 NPR1P16066 1061 aa21.3■■□□□ 1
SNCA-205ENST00000394991 EAPPQ56P03 285 aaPredicted RBP21.3■■□□□ 1
SNCA-205ENST00000394991 LAMB4A4D0S4 1761 aa21.29■■□□□ 1
SNCA-205ENST00000394991 NPC1L1Q9UHC9 1359 aa21.29■■□□□ 1
SNCA-205ENST00000394991 CLEC4GQ6UXB4 293 aa21.29■■□□□ 1
SNCA-205ENST00000394991 SNED1Q8TER0 1413 aa21.29■■□□□ 1
SNCA-205ENST00000394991 CTCFP49711 727 aaPredicted RBP21.28■■□□□ 1
SNCA-205ENST00000394991 CNGB1Q14028 1251 aaPredicted RBP21.28■■□□□ 1
SNCA-205ENST00000394991 HACL1Q9UJ83 578 aa21.28■■□□□ 1
SNCA-205ENST00000394991 LTBP1Q14766 1721 aa21.28■■□□□ 1
SNCA-205ENST00000394991 PRKAR2BP31323 418 aa21.27■■□□□ 1
SNCA-205ENST00000394991 EPHX2P34913 555 aa21.27■■□□□ 1
SNCA-205ENST00000394991 AIDAQ96BJ3 306 aa21.27■■□□□ 1
SNCA-205ENST00000394991 RSPH6AQ9H0K4 717 aa21.27■■□□□ 1
SNCA-205ENST00000394991 WBP1LQ9NX94 342 aa21.27■■□□□ 1
SNCA-205ENST00000394991 COL4A5P29400 1685 aa21.27■■□□□ 1
SNCA-205ENST00000394991 NUP98P52948 1817 aa21.27■□□□□ 0.99
SNCA-205ENST00000394991 NBPF26B4DH59 902 aa21.26■□□□□ 0.99
SNCA-205ENST00000394991 NBPF10Q6P3W6 841 aaKnown RBP21.26■□□□□ 0.99
SNCA-205ENST00000394991 NBPF15Q8N660 670 aa21.26■□□□□ 0.99
SNCA-205ENST00000394991 NIP7Q9Y221 180 aaKnown RBP eCLIP21.26■□□□□ 0.99
SNCA-205ENST00000394991 ZNF652Q9Y2D9 606 aa21.26■□□□□ 0.99
SNCA-205ENST00000394991 RNF123Q5XPI4 1314 aa21.26■□□□□ 0.99
SNCA-205ENST00000394991 THSD7BQ9C0I4 1608 aa21.26■□□□□ 0.99
SNCA-205ENST00000394991 CLEC11AQ9Y240 323 aa21.25■□□□□ 0.99
SNCA-205ENST00000394991 FAM177BA6PVY3 158 aa21.24■□□□□ 0.99
SNCA-205ENST00000394991 FZD9O00144 591 aa21.24■□□□□ 0.99
SNCA-205ENST00000394991 SNRPA1P09661 255 aaKnown RBP21.24■□□□□ 0.99
SNCA-205ENST00000394991 IARSP41252 1262 aaKnown RBP21.24■□□□□ 0.99
SNCA-205ENST00000394991 LBX1P52954 281 aa21.24■□□□□ 0.99
SNCA-205ENST00000394991 MAP1SQ66K74 1059 aaPredicted RBP21.24■□□□□ 0.99
SNCA-205ENST00000394991 RTKN2Q8IZC4 609 aa21.24■□□□□ 0.99
SNCA-205ENST00000394991 TRPM7Q96QT4 1865 aa21.24■□□□□ 0.99
SNCA-205ENST00000394991 RASSF10A6NK89 507 aa21.23■□□□□ 0.99
SNCA-205ENST00000394991 TPTE2Q6XPS3 522 aa21.23■□□□□ 0.99
SNCA-205ENST00000394991 MCM10Q7L590 875 aa21.23■□□□□ 0.99
SNCA-205ENST00000394991 SYNE4Q8N205 404 aa21.23■□□□□ 0.99
SNCA-205ENST00000394991 ABCC12Q96J65 1359 aa21.23■□□□□ 0.99
SNCA-205ENST00000394991 RGL2O15211 777 aa21.22■□□□□ 0.99
SNCA-205ENST00000394991 HSPA8P11142 646 aaKnown RBP21.22■□□□□ 0.99
SNCA-205ENST00000394991 HLFQ16534 295 aa21.22■□□□□ 0.99
SNCA-205ENST00000394991 CNTROBQ8N137 903 aa21.22■□□□□ 0.99
SNCA-205ENST00000394991 DLG5Q8TDM6 1919 aa21.21■□□□□ 0.99
SNCA-205ENST00000394991 KDM3BQ7LBC6 1761 aa21.21■□□□□ 0.99
SNCA-205ENST00000394991 PNMA8AQ86V59 439 aaPredicted RBP21.21■□□□□ 0.99
SNCA-205ENST00000394991 DEFB115Q30KQ5 88 aa21.2■□□□□ 0.98
SNCA-205ENST00000394991 GPC2Q8N158 579 aa21.2■□□□□ 0.98
SNCA-205ENST00000394991 DCTN1Q14203 1278 aa21.19■□□□□ 0.98
SNCA-205ENST00000394991 CCER1Q8TC90 406 aaPredicted RBP21.19■□□□□ 0.98
SNCA-205ENST00000394991 WDR33Q9C0J8 1336 aaKnown RBP21.19■□□□□ 0.98
SNCA-205ENST00000394991 ALDH1B1P30837 517 aa21.18■□□□□ 0.98
SNCA-205ENST00000394991 PSMD1Q99460 953 aa21.18■□□□□ 0.98
SNCA-205ENST00000394991 FMR1Q06787 632 aaKnown RBP eCLIP21.17■□□□□ 0.98
SNCA-205ENST00000394991 CRY2Q49AN0 593 aa21.17■□□□□ 0.98
SNCA-205ENST00000394991 SLC51AQ86UW1 340 aa21.17■□□□□ 0.98
SNCA-205ENST00000394991 RTF1Q92541 710 aaKnown RBP21.17■□□□□ 0.98
SNCA-205ENST00000394991 NUTM1Q86Y26 1132 aa21.16■□□□□ 0.98
SNCA-205ENST00000394991 ABHD8Q96I13 439 aa21.16■□□□□ 0.98
SNCA-205ENST00000394991 DDX21Q9NR30 783 aaKnown RBP eCLIP21.16■□□□□ 0.98
SNCA-205ENST00000394991 ABT1Q9ULW3 272 aaKnown RBP21.16■□□□□ 0.98
SNCA-205ENST00000394991 GTF2E1P29083 439 aaPredicted RBP21.15■□□□□ 0.98
SNCA-205ENST00000394991 JDP2Q8WYK2 163 aa21.15■□□□□ 0.98
Retrieved 100 of 20,778 RNA–protein pairs in 55.6 ms