RNA–Protein interactions for RNA: ENST00000394456.9

GTF2F1-201, Transcript of general transcription factor IIF subunit 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene GTF2F1, Length 2,731 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
GTF2F1-201ENST00000394456 RASEFQ8IZ41 740 aa16.39■□□□□ 0.21
GTF2F1-201ENST00000394456 PXDNLA1KZ92 1463 aa16.38■□□□□ 0.21
GTF2F1-201ENST00000394456 SCN11AQ9UI33 1791 aa16.38■□□□□ 0.21
GTF2F1-201ENST00000394456 SYCE3A1L190 88 aa16.38■□□□□ 0.21
GTF2F1-201ENST00000394456 DNAAF4Q8WXU2 420 aa16.38■□□□□ 0.21
GTF2F1-201ENST00000394456 OVOS2A0A0G2JMS6 1433 aa16.38■□□□□ 0.21
GTF2F1-201ENST00000394456 KDM6AO15550 1401 aaPredicted RBP16.38■□□□□ 0.21
GTF2F1-201ENST00000394456 PTMSP20962 102 aa16.38■□□□□ 0.21
GTF2F1-201ENST00000394456 ADCY9O60503 1353 aa16.37■□□□□ 0.21
GTF2F1-201ENST00000394456 CWF19L2Q2TBE0 894 aaKnown RBP16.37■□□□□ 0.21
GTF2F1-201ENST00000394456 PHKG2P15735 406 aa16.37■□□□□ 0.21
GTF2F1-201ENST00000394456 ZNF445P59923 1031 aa16.37■□□□□ 0.21
GTF2F1-201ENST00000394456 COL9A3Q14050 684 aaPredicted RBP16.37■□□□□ 0.21
GTF2F1-201ENST00000394456 CWC27Q6UX04 472 aaKnown RBP16.37■□□□□ 0.21
GTF2F1-201ENST00000394456 NFATC2IPQ8NCF5 419 aa16.37■□□□□ 0.21
GTF2F1-201ENST00000394456 GADD45BO75293 160 aaPredicted RBP16.36■□□□□ 0.21
GTF2F1-201ENST00000394456 BRD1O95696 1058 aa16.36■□□□□ 0.21
GTF2F1-201ENST00000394456 CUL4AQ13619 759 aa16.36■□□□□ 0.21
GTF2F1-201ENST00000394456 SLAIN2Q9P270 581 aa16.36■□□□□ 0.21
GTF2F1-201ENST00000394456 DBF4Q9UBU7 674 aaPredicted RBP16.36■□□□□ 0.21
GTF2F1-201ENST00000394456 ADAMTS7Q9UKP4 1686 aa16.36■□□□□ 0.21
GTF2F1-201ENST00000394456 RNF214Q8ND24 703 aa16.35■□□□□ 0.21
GTF2F1-201ENST00000394456 SLC52A2Q9HAB3 445 aa16.35■□□□□ 0.21
GTF2F1-201ENST00000394456 HEG1Q9ULI3 1381 aa16.34■□□□□ 0.21
GTF2F1-201ENST00000394456 CYP27B1O15528 508 aa16.34■□□□□ 0.21
GTF2F1-201ENST00000394456 MCCP23508 829 aa16.34■□□□□ 0.21
GTF2F1-201ENST00000394456 PPP1R9BQ96SB3 815 aa16.34■□□□□ 0.21
GTF2F1-201ENST00000394456 PRDM11Q9NQV5 511 aa16.34■□□□□ 0.21
GTF2F1-201ENST00000394456 MAP3K2Q9Y2U5 619 aa16.34■□□□□ 0.21
GTF2F1-201ENST00000394456 SNX14Q9Y5W7 946 aa16.34■□□□□ 0.21
GTF2F1-201ENST00000394456 HSPA4P34932 840 aa16.34■□□□□ 0.21
GTF2F1-201ENST00000394456 OS9Q13438 667 aaPredicted RBP16.34■□□□□ 0.21
GTF2F1-201ENST00000394456 ZNF790Q6PG37 636 aa16.34■□□□□ 0.21
GTF2F1-201ENST00000394456 SGSM2O43147 1006 aa16.33■□□□□ 0.21
GTF2F1-201ENST00000394456 LARGE1O95461 756 aa16.33■□□□□ 0.21
GTF2F1-201ENST00000394456 AIMP1Q12904 312 aaKnown RBP16.33■□□□□ 0.21
GTF2F1-201ENST00000394456 IFNL2Q8IZJ0 200 aa16.33■□□□□ 0.21
GTF2F1-201ENST00000394456 LSG1Q9H089 658 aaKnown RBP16.33■□□□□ 0.21
GTF2F1-201ENST00000394456 C5P01031 1676 aa16.33■□□□□ 0.21
GTF2F1-201ENST00000394456 CPDO75976 1380 aa16.33■□□□□ 0.2
GTF2F1-201ENST00000394456 PTH1RQ03431 593 aa16.32■□□□□ 0.2
GTF2F1-201ENST00000394456 CCDC173Q0VFZ6 552 aa16.32■□□□□ 0.2
GTF2F1-201ENST00000394456 CHMP4AQ9BY43 222 aa16.32■□□□□ 0.2
GTF2F1-201ENST00000394456 JARID2Q92833 1246 aaPredicted RBP16.32■□□□□ 0.2
GTF2F1-201ENST00000394456 KIF1BPQ96EK5 621 aa16.32■□□□□ 0.2
GTF2F1-201ENST00000394456 PIP4K2AP48426 406 aaPredicted RBP16.32■□□□□ 0.2
GTF2F1-201ENST00000394456 KLHDC4Q8TBB5 520 aa16.32■□□□□ 0.2
GTF2F1-201ENST00000394456 AK2P54819 239 aa16.31■□□□□ 0.2
GTF2F1-201ENST00000394456 ANAPC15P60006 121 aa16.31■□□□□ 0.2
GTF2F1-201ENST00000394456 SOS2Q07890 1332 aaPredicted RBP16.31■□□□□ 0.2
GTF2F1-201ENST00000394456 RAB11FIP3O75154 756 aa16.31■□□□□ 0.2
GTF2F1-201ENST00000394456 ADCK5Q3MIX3 580 aa16.31■□□□□ 0.2
GTF2F1-201ENST00000394456 TOM1L2Q6ZVM7 507 aa16.31■□□□□ 0.2
GTF2F1-201ENST00000394456 RUFY3Q7L099 469 aa16.31■□□□□ 0.2
GTF2F1-201ENST00000394456 ZNF496Q96IT1 587 aaPredicted RBP16.31■□□□□ 0.2
GTF2F1-201ENST00000394456 RAD50Q92878 1312 aa16.3■□□□□ 0.2
GTF2F1-201ENST00000394456 MYL6BP14649 208 aa16.3■□□□□ 0.2
GTF2F1-201ENST00000394456 MPNDQ8N594 471 aa16.3■□□□□ 0.2
GTF2F1-201ENST00000394456 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP16.3■□□□□ 0.25e-7■■■■■ 31.6
GTF2F1-201ENST00000394456 PKD1L3Q7Z443 1732 aa16.3■□□□□ 0.2
GTF2F1-201ENST00000394456 KAZALD1Q96I82 304 aa16.3■□□□□ 0.2
GTF2F1-201ENST00000394456 TLR7Q9NYK1 1049 aaKnown RBP16.3■□□□□ 0.2
GTF2F1-201ENST00000394456 RPAP1Q9BWH6 1393 aaPredicted RBP16.3■□□□□ 0.2
GTF2F1-201ENST00000394456 KSR2Q6VAB6 950 aa16.29■□□□□ 0.2
GTF2F1-201ENST00000394456 C9orf78Q9NZ63 289 aaPredicted RBP16.29■□□□□ 0.2
GTF2F1-201ENST00000394456 PDIA6Q15084 440 aa16.29■□□□□ 0.2
GTF2F1-201ENST00000394456 USP48Q86UV5 1035 aa16.29■□□□□ 0.2
GTF2F1-201ENST00000394456 DCAF5Q96JK2 942 aa16.29■□□□□ 0.2
GTF2F1-201ENST00000394456 TTC14Q96N46 770 aa16.29■□□□□ 0.2
GTF2F1-201ENST00000394456 SIL1Q9H173 461 aa16.29■□□□□ 0.2
GTF2F1-201ENST00000394456 ABCC6O95255 1503 aa16.29■□□□□ 0.2
GTF2F1-201ENST00000394456 AOX1Q06278 1338 aa16.29■□□□□ 0.2
GTF2F1-201ENST00000394456 SUCLG2Q96I99 432 aa16.28■□□□□ 0.2
GTF2F1-201ENST00000394456 DDX21Q9NR30 783 aaKnown RBP eCLIP16.28■□□□□ 0.2
GTF2F1-201ENST00000394456 HYPKQ9NX55 129 aa16.28■□□□□ 0.2
GTF2F1-201ENST00000394456 EIF2AK3Q9NZJ5 1116 aaKnown RBP16.28■□□□□ 0.2
GTF2F1-201ENST00000394456 CNPY2Q9Y2B0 182 aa16.28■□□□□ 0.2
GTF2F1-201ENST00000394456 MCM2P49736 904 aa16.28■□□□□ 0.2
GTF2F1-201ENST00000394456 LRSAM1Q6UWE0 723 aa16.28■□□□□ 0.2
GTF2F1-201ENST00000394456 CCDC8Q9H0W5 538 aaPredicted RBP16.28■□□□□ 0.2
GTF2F1-201ENST00000394456 STRN4Q9NRL3 753 aa16.28■□□□□ 0.2
GTF2F1-201ENST00000394456 WDR17Q8IZU2 1322 aa16.28■□□□□ 0.2
GTF2F1-201ENST00000394456 CASTP20810 708 aaKnown RBP16.27■□□□□ 0.2
GTF2F1-201ENST00000394456 PRPF40BQ6NWY9 871 aaKnown RBP16.27■□□□□ 0.2
GTF2F1-201ENST00000394456 TTC5Q8N0Z6 440 aa16.27■□□□□ 0.2
GTF2F1-201ENST00000394456 CNTROBQ8N137 903 aa16.27■□□□□ 0.2
GTF2F1-201ENST00000394456 TAF6LQ9Y6J9 622 aa16.27■□□□□ 0.2
GTF2F1-201ENST00000394456 INTS4Q96HW7 963 aaKnown RBP16.27■□□□□ 0.19
GTF2F1-201ENST00000394456 FAM227BQ96M60 508 aa16.27■□□□□ 0.19
GTF2F1-201ENST00000394456 ABCA3Q99758 1704 aa16.27■□□□□ 0.19
GTF2F1-201ENST00000394456 CABP4P57796 275 aa16.26■□□□□ 0.19
GTF2F1-201ENST00000394456 AACSQ86V21 672 aa16.26■□□□□ 0.19
GTF2F1-201ENST00000394456 USP16Q9Y5T5 823 aa16.26■□□□□ 0.19
GTF2F1-201ENST00000394456 TCEANC2Q96MN5 208 aa16.26■□□□□ 0.19
GTF2F1-201ENST00000394456 BICC1Q9H694 974 aaKnown RBP16.26■□□□□ 0.19
GTF2F1-201ENST00000394456 COL5A2P05997 1499 aaPredicted RBP16.25■□□□□ 0.19
GTF2F1-201ENST00000394456 SASH1O94885 1247 aa16.25■□□□□ 0.19
GTF2F1-201ENST00000394456 CHGBP05060 677 aa16.25■□□□□ 0.19
GTF2F1-201ENST00000394456 ZSCAN30Q86W11 494 aa16.25■□□□□ 0.19
GTF2F1-201ENST00000394456 ANP32BQ92688 251 aaKnown RBP16.25■□□□□ 0.19
Retrieved 100 of 20,778 RNA–protein pairs in 39 ms