RNA–Protein interactions for RNA: ENST00000394243.5

SYNPO-202, Transcript of synaptopodin, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene SYNPO, Length 7,063 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNPO-202ENST00000394243 ZNF76P36508 570 aa13.62□□□□□ -0.23
SYNPO-202ENST00000394243 USP5P45974 858 aa13.62□□□□□ -0.23
SYNPO-202ENST00000394243 SSH1Q8WYL5 1049 aa13.62□□□□□ -0.23
SYNPO-202ENST00000394243 UBA5Q9GZZ9 404 aa13.62□□□□□ -0.23
SYNPO-202ENST00000394243 CTAGE9A4FU28 777 aa13.62□□□□□ -0.23
SYNPO-202ENST00000394243 CCDC82Q8N4S0 544 aa13.62□□□□□ -0.23
SYNPO-202ENST00000394243 IGHDP01880 384 aa13.62□□□□□ -0.23
SYNPO-202ENST00000394243 ANKRD18BA2A2Z9 1011 aa13.62□□□□□ -0.23
SYNPO-202ENST00000394243 PTGS1P23219 599 aa13.62□□□□□ -0.23
SYNPO-202ENST00000394243 WDR66Q8TBY9 1149 aa13.62□□□□□ -0.23
SYNPO-202ENST00000394243 ZSCAN22P10073 491 aaPredicted RBP13.62□□□□□ -0.23
SYNPO-202ENST00000394243 U2AF2P26368 475 aaKnown RBP eCLIP13.62□□□□□ -0.23
SYNPO-202ENST00000394243 TMPOP42166 694 aaKnown RBP13.62□□□□□ -0.23
SYNPO-202ENST00000394243 HSP90AA4PQ58FG1 418 aa13.62□□□□□ -0.23
SYNPO-202ENST00000394243 CFAP57Q96MR6 1250 aa13.62□□□□□ -0.23
SYNPO-202ENST00000394243 PUS7Q96PZ0 661 aaKnown RBP13.62□□□□□ -0.23
SYNPO-202ENST00000394243 SEPT6Q14141 434 aa13.61□□□□□ -0.23
SYNPO-202ENST00000394243 LRRC9Q6ZRR7 1453 aa13.61□□□□□ -0.23
SYNPO-202ENST00000394243 A0A1B0GUA9 196 aa13.61□□□□□ -0.23
SYNPO-202ENST00000394243 IDH1O75874 414 aaKnown RBP13.61□□□□□ -0.23
SYNPO-202ENST00000394243 POLR3DP05423 398 aaPredicted RBP13.61□□□□□ -0.23
SYNPO-202ENST00000394243 PHAXQ9H814 394 aaKnown RBP13.61□□□□□ -0.23
SYNPO-202ENST00000394243 SYT1P21579 422 aa13.61□□□□□ -0.23
SYNPO-202ENST00000394243 CCDC97Q96F63 343 aaPredicted RBP13.61□□□□□ -0.23
SYNPO-202ENST00000394243 N4BP3O15049 544 aa13.61□□□□□ -0.23
SYNPO-202ENST00000394243 HMGB1P09429 215 aaKnown RBP13.61□□□□□ -0.23
SYNPO-202ENST00000394243 CEP126Q9P2H0 1117 aa13.61□□□□□ -0.23
SYNPO-202ENST00000394243 SPG7Q9UQ90 795 aa13.61□□□□□ -0.23
SYNPO-202ENST00000394243 CTNNA2P26232 953 aa13.6□□□□□ -0.23
SYNPO-202ENST00000394243 PIP4K2BP78356 416 aa13.6□□□□□ -0.23
SYNPO-202ENST00000394243 TMX3Q96JJ7 454 aa13.6□□□□□ -0.23
SYNPO-202ENST00000394243 PUF60Q9UHX1 559 aaKnown RBP13.6□□□□□ -0.23
SYNPO-202ENST00000394243 LRPPRCP42704 1394 aaKnown RBP13.6□□□□□ -0.23
SYNPO-202ENST00000394243 KIAA0753Q2KHM9 967 aa13.6□□□□□ -0.23
SYNPO-202ENST00000394243 SYT10Q6XYQ8 523 aa13.6□□□□□ -0.23
SYNPO-202ENST00000394243 CPLX4Q7Z7G2 160 aa13.6□□□□□ -0.23
SYNPO-202ENST00000394243 DNAJC25Q9H1X3 360 aa13.6□□□□□ -0.23
SYNPO-202ENST00000394243 ANKRD50Q9ULJ7 1429 aa13.6□□□□□ -0.23
SYNPO-202ENST00000394243 BMP2KLQ5H9B9 411 aa13.6□□□□□ -0.23
SYNPO-202ENST00000394243 PAXIP1Q6ZW49 1069 aaPredicted RBP13.6□□□□□ -0.23
SYNPO-202ENST00000394243 AIDAQ96BJ3 306 aa13.6□□□□□ -0.23
SYNPO-202ENST00000394243 RHOXF2BP0C7M4 288 aa13.6□□□□□ -0.23
SYNPO-202ENST00000394243 RHOXF2Q9BQY4 288 aa13.6□□□□□ -0.23
SYNPO-202ENST00000394243 ANKRD30BQ9BXX2 1392 aa13.6□□□□□ -0.23
SYNPO-202ENST00000394243 AOPEPQ8N6M6 819 aa13.6□□□□□ -0.23
SYNPO-202ENST00000394243 NAP1L3Q99457 506 aaPredicted RBP13.6□□□□□ -0.23
SYNPO-202ENST00000394243 ERBINQ96RT1 1412 aa13.6□□□□□ -0.23
SYNPO-202ENST00000394243 SELENOSQ9BQE4 189 aa13.6□□□□□ -0.23
SYNPO-202ENST00000394243 PPP1R14CQ8TAE6 165 aa13.59□□□□□ -0.23
SYNPO-202ENST00000394243 CCDC102BQ68D86 513 aa13.59□□□□□ -0.23
SYNPO-202ENST00000394243 GOLGA8BA8MQT2 603 aa13.59□□□□□ -0.23
SYNPO-202ENST00000394243 SSRP1Q08945 709 aaKnown RBP13.59□□□□□ -0.23
SYNPO-202ENST00000394243 CCDC129Q6ZRS4 1044 aa13.59□□□□□ -0.23
SYNPO-202ENST00000394243 FAM76AQ8TAV0 307 aa13.59□□□□□ -0.23
SYNPO-202ENST00000394243 KIF21BO75037 1637 aa13.58□□□□□ -0.23
SYNPO-202ENST00000394243 TUBB4AP04350 444 aa13.58□□□□□ -0.24
SYNPO-202ENST00000394243 HDXQ7Z353 690 aa13.58□□□□□ -0.24
SYNPO-202ENST00000394243 AKR1B10O60218 316 aa13.58□□□□□ -0.24
SYNPO-202ENST00000394243 TRIM21P19474 475 aaKnown RBP13.58□□□□□ -0.24
SYNPO-202ENST00000394243 CLNS1AP54105 237 aaKnown RBP13.58□□□□□ -0.24
SYNPO-202ENST00000394243 JPH4Q96JJ6 628 aa13.58□□□□□ -0.24
SYNPO-202ENST00000394243 UCHL5Q9Y5K5 329 aaKnown RBP eCLIP13.58□□□□□ -0.24
SYNPO-202ENST00000394243 CCDC196A0A1B0GTZ2 297 aa13.58□□□□□ -0.24
SYNPO-202ENST00000394243 CAPZA3Q96KX2 299 aa13.58□□□□□ -0.24
SYNPO-202ENST00000394243 MPHOSPH8Q99549 860 aa13.58□□□□□ -0.24
SYNPO-202ENST00000394243 LRP2BPQ9P2M1 347 aa13.58□□□□□ -0.24
SYNPO-202ENST00000394243 PLEKHH2Q8IVE3 1493 aa13.58□□□□□ -0.24
SYNPO-202ENST00000394243 TOP2AP11388 1531 aaKnown RBP13.58□□□□□ -0.24
SYNPO-202ENST00000394243 POLA1P09884 1462 aaPredicted RBP13.57□□□□□ -0.24
SYNPO-202ENST00000394243 PPFIA3O75145 1194 aa13.57□□□□□ -0.24
SYNPO-202ENST00000394243 CCDC40Q4G0X9 1142 aa13.57□□□□□ -0.24
SYNPO-202ENST00000394243 RBM42Q9BTD8 480 aaKnown RBP13.57□□□□□ -0.24
SYNPO-202ENST00000394243 CYLC1P35663 651 aaPredicted RBP13.57□□□□□ -0.24
SYNPO-202ENST00000394243 KARSQ15046 597 aaKnown RBP13.57□□□□□ -0.24
SYNPO-202ENST00000394243 SPTY2D1Q68D10 685 aaPredicted RBP13.57□□□□□ -0.24
SYNPO-202ENST00000394243 ABTB2Q8N961 1025 aa13.57□□□□□ -0.24
SYNPO-202ENST00000394243 FAM114A1Q8IWE2 563 aa13.57□□□□□ -0.24
SYNPO-202ENST00000394243 SLC12A7Q9Y666 1083 aa13.57□□□□□ -0.24
SYNPO-202ENST00000394243 IKBKGQ9Y6K9 419 aa13.57□□□□□ -0.24
SYNPO-202ENST00000394243 ARID4AP29374 1257 aaPredicted RBP13.57□□□□□ -0.24
SYNPO-202ENST00000394243 ZBTB16Q05516 673 aa13.57□□□□□ -0.24
SYNPO-202ENST00000394243 DACT1Q9NYF0 836 aa13.57□□□□□ -0.24
SYNPO-202ENST00000394243 SYKP43405 635 aa13.57□□□□□ -0.24
SYNPO-202ENST00000394243 KANK3Q6NY19 840 aa13.57□□□□□ -0.24
SYNPO-202ENST00000394243 DDX46Q7L014 1031 aaKnown RBP13.57□□□□□ -0.24
SYNPO-202ENST00000394243 IFI16Q16666 785 aaKnown RBP13.56□□□□□ -0.24
SYNPO-202ENST00000394243 FYCO1Q9BQS8 1478 aa13.56□□□□□ -0.24
SYNPO-202ENST00000394243 ALDH1L2Q3SY69 923 aa13.56□□□□□ -0.24
SYNPO-202ENST00000394243 THUMPD2Q9BTF0 503 aaKnown RBP13.56□□□□□ -0.24
SYNPO-202ENST00000394243 MINDY4BA8MYZ0 360 aa13.56□□□□□ -0.24
SYNPO-202ENST00000394243 TYRO3Q06418 890 aa13.56□□□□□ -0.24
SYNPO-202ENST00000394243 NFE2L2Q16236 605 aa13.56□□□□□ -0.24
SYNPO-202ENST00000394243 ZSCAN16Q9H4T2 348 aaPredicted RBP13.56□□□□□ -0.24
SYNPO-202ENST00000394243 MIS18AQ9NYP9 233 aa13.56□□□□□ -0.24
SYNPO-202ENST00000394243 TCERG1LQ5VWI1 586 aa13.56□□□□□ -0.24
SYNPO-202ENST00000394243 DDX23Q9BUQ8 820 aaKnown RBP13.56□□□□□ -0.24
SYNPO-202ENST00000394243 SEC63Q9UGP8 760 aaKnown RBP13.56□□□□□ -0.24
SYNPO-202ENST00000394243 RIOK3O14730 519 aaKnown RBP13.56□□□□□ -0.24
SYNPO-202ENST00000394243 FAM160A1Q05DH4 1040 aa13.56□□□□□ -0.24
SYNPO-202ENST00000394243 GABPB1Q06547 395 aaPredicted RBP13.55□□□□□ -0.24
Retrieved 100 of 20,778 RNA–protein pairs in 17.5 ms