RNA–Protein interactions for RNA: ENST00000378676.1

SHROOM1-202, Transcript of shroom family member 1, humanhuman

APPRIS ALT2 TSL 5 BASIC

Gene SHROOM1, Length 2,352 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHROOM1-202ENST00000378676 C9orf78Q9NZ63 289 aaPredicted RBP23.62■■□□□ 1.37
SHROOM1-202ENST00000378676 RPAP1Q9BWH6 1393 aaPredicted RBP23.61■■□□□ 1.37
SHROOM1-202ENST00000378676 SPG7Q9UQ90 795 aa23.61■■□□□ 1.37
SHROOM1-202ENST00000378676 TTC14Q96N46 770 aa23.6■■□□□ 1.37
SHROOM1-202ENST00000378676 ALS2Q96Q42 1657 aa23.6■■□□□ 1.37
SHROOM1-202ENST00000378676 KIF1AQ12756 1690 aa23.59■■□□□ 1.37
SHROOM1-202ENST00000378676 SYCE3A1L190 88 aa23.59■■□□□ 1.37
SHROOM1-202ENST00000378676 GLRX3O76003 335 aaKnown RBP23.59■■□□□ 1.37
SHROOM1-202ENST00000378676 KDM4FA0A1W2PPD8 638 aa23.59■■□□□ 1.37
SHROOM1-202ENST00000378676 FOXD4L6Q3SYB3 417 aaPredicted RBP23.58■■□□□ 1.37
SHROOM1-202ENST00000378676 FOXD4L3Q6VB84 417 aaPredicted RBP23.58■■□□□ 1.37
SHROOM1-202ENST00000378676 CLASRPQ8N2M8 674 aaKnown RBP23.58■■□□□ 1.37
SHROOM1-202ENST00000378676 LMTK3Q96Q04 1460 aa23.58■■□□□ 1.37
SHROOM1-202ENST00000378676 AK2P54819 239 aa23.58■■□□□ 1.37
SHROOM1-202ENST00000378676 LRSAM1Q6UWE0 723 aa23.58■■□□□ 1.37
SHROOM1-202ENST00000378676 TNFRSF11AQ9Y6Q6 616 aaPredicted RBP23.58■■□□□ 1.37
SHROOM1-202ENST00000378676 MBD3O95983 291 aa23.57■■□□□ 1.36
SHROOM1-202ENST00000378676 ANP32BQ92688 251 aaKnown RBP23.57■■□□□ 1.36
SHROOM1-202ENST00000378676 KAZALD1Q96I82 304 aa23.57■■□□□ 1.36
SHROOM1-202ENST00000378676 SUCLG2Q96I99 432 aa23.57■■□□□ 1.36
SHROOM1-202ENST00000378676 LARP6Q9BRS8 491 aaKnown RBP23.57■■□□□ 1.36
SHROOM1-202ENST00000378676 CPA1P15085 419 aa23.57■■□□□ 1.36
SHROOM1-202ENST00000378676 NAP1L5Q96NT1 182 aaPredicted RBP23.57■■□□□ 1.36
SHROOM1-202ENST00000378676 GDPD2Q9HCC8 539 aa23.56■■□□□ 1.36
SHROOM1-202ENST00000378676 DIAPH3Q9NSV4 1193 aa23.56■■□□□ 1.36
SHROOM1-202ENST00000378676 ECHDC1Q9NTX5 307 aa23.56■■□□□ 1.36
SHROOM1-202ENST00000378676 PTH1RQ03431 593 aa23.56■■□□□ 1.36
SHROOM1-202ENST00000378676 KIAA1211Q6ZU35 1233 aa23.56■■□□□ 1.36
SHROOM1-202ENST00000378676 RUFY3Q7L099 469 aa23.56■■□□□ 1.36
SHROOM1-202ENST00000378676 HYPKQ9NX55 129 aa23.56■■□□□ 1.36
SHROOM1-202ENST00000378676 AIMP1Q12904 312 aaKnown RBP23.55■■□□□ 1.36
SHROOM1-202ENST00000378676 PDIA6Q15084 440 aa23.55■■□□□ 1.36
SHROOM1-202ENST00000378676 WDR33Q9C0J8 1336 aaKnown RBP23.55■■□□□ 1.36
SHROOM1-202ENST00000378676 KDM6AO15550 1401 aaPredicted RBP23.54■■□□□ 1.36
SHROOM1-202ENST00000378676 ERBB3P21860 1342 aa23.54■■□□□ 1.36
SHROOM1-202ENST00000378676 GRM8O00222 908 aa23.54■■□□□ 1.36
SHROOM1-202ENST00000378676 KRT28Q7Z3Y7 464 aa23.54■■□□□ 1.36
SHROOM1-202ENST00000378676 LINS1Q8NG48 757 aa23.54■■□□□ 1.36
SHROOM1-202ENST00000378676 BICC1Q9H694 974 aaKnown RBP23.54■■□□□ 1.36
SHROOM1-202ENST00000378676 GADD45BO75293 160 aaPredicted RBP23.54■■□□□ 1.36
SHROOM1-202ENST00000378676 IFIT2P09913 472 aaKnown RBP23.54■■□□□ 1.36
SHROOM1-202ENST00000378676 AACSQ86V21 672 aa23.54■■□□□ 1.36
SHROOM1-202ENST00000378676 DDX21Q9NR30 783 aaKnown RBP eCLIP23.54■■□□□ 1.36
SHROOM1-202ENST00000378676 AFDNP55196 1824 aaKnown RBP23.53■■□□□ 1.36
SHROOM1-202ENST00000378676 UTYO14607 1347 aa23.53■■□□□ 1.36
SHROOM1-202ENST00000378676 LARGE1O95461 756 aa23.53■■□□□ 1.36
SHROOM1-202ENST00000378676 GLIPR1L2Q4G1C9 344 aa23.53■■□□□ 1.36
SHROOM1-202ENST00000378676 ERC1Q8IUD2 1116 aa23.53■■□□□ 1.36
SHROOM1-202ENST00000378676 SASH1O94885 1247 aa23.52■■□□□ 1.36
SHROOM1-202ENST00000378676 SLC39A6Q13433 755 aa23.52■■□□□ 1.36
SHROOM1-202ENST00000378676 C1orf167Q5SNV9 1468 aa23.52■■□□□ 1.36
SHROOM1-202ENST00000378676 CASTP20810 708 aaKnown RBP23.52■■□□□ 1.36
SHROOM1-202ENST00000378676 PDLIM2Q96JY6 352 aa23.52■■□□□ 1.36
SHROOM1-202ENST00000378676 ADCK5Q3MIX3 580 aa23.51■■□□□ 1.35
SHROOM1-202ENST00000378676 LIMCH1Q9UPQ0 1083 aa23.51■■□□□ 1.35
SHROOM1-202ENST00000378676 IGKV5-2P06315 115 aa23.51■■□□□ 1.35
SHROOM1-202ENST00000378676 ZC3H6P61129 1189 aaKnown RBP23.51■■□□□ 1.35
SHROOM1-202ENST00000378676 ZSCAN30Q86W11 494 aa23.51■■□□□ 1.35
SHROOM1-202ENST00000378676 GPATCH3Q96I76 525 aa23.51■■□□□ 1.35
SHROOM1-202ENST00000378676 COL18A1P39060 1754 aa23.5■■□□□ 1.35
SHROOM1-202ENST00000378676 PRPF40BQ6NWY9 871 aaKnown RBP23.5■■□□□ 1.35
SHROOM1-202ENST00000378676 USP48Q86UV5 1035 aa23.5■■□□□ 1.35
SHROOM1-202ENST00000378676 RUFY2Q8WXA3 655 aa23.5■■□□□ 1.35
SHROOM1-202ENST00000378676 EAF2Q96CJ1 260 aaPredicted RBP23.5■■□□□ 1.35
SHROOM1-202ENST00000378676 TLR7Q9NYK1 1049 aaKnown RBP23.5■■□□□ 1.35
SHROOM1-202ENST00000378676 HSPA2P54652 639 aa23.49■■□□□ 1.35
SHROOM1-202ENST00000378676 MEGF6O75095 1541 aa23.49■■□□□ 1.35
SHROOM1-202ENST00000378676 DTNBO60941 627 aa23.49■■□□□ 1.35
SHROOM1-202ENST00000378676 DDX58O95786 925 aaKnown RBP23.49■■□□□ 1.35
SHROOM1-202ENST00000378676 EVI5LQ96CN4 794 aa23.49■■□□□ 1.35
SHROOM1-202ENST00000378676 ZNF790Q6PG37 636 aa23.48■■□□□ 1.35
SHROOM1-202ENST00000378676 JAKMIP1Q96N16 626 aaKnown RBP23.48■■□□□ 1.35
SHROOM1-202ENST00000378676 CCDC8Q9H0W5 538 aaPredicted RBP23.48■■□□□ 1.35
SHROOM1-202ENST00000378676 HDAC5Q9UQL6 1122 aa23.48■■□□□ 1.35
SHROOM1-202ENST00000378676 MST1RQ04912 1400 aa23.48■■□□□ 1.35
SHROOM1-202ENST00000378676 MRC1P22897 1456 aa23.48■■□□□ 1.35
SHROOM1-202ENST00000378676 CCDC171Q6TFL3 1326 aa23.47■■□□□ 1.35
SHROOM1-202ENST00000378676 ARFGEF2Q9Y6D5 1785 aa23.47■■□□□ 1.35
SHROOM1-202ENST00000378676 ZSCAN22P10073 491 aaPredicted RBP23.47■■□□□ 1.35
SHROOM1-202ENST00000378676 MYL6BP14649 208 aa23.47■■□□□ 1.35
SHROOM1-202ENST00000378676 PROSER2Q86WR7 435 aaPredicted RBP23.47■■□□□ 1.35
SHROOM1-202ENST00000378676 KLHDC4Q8TBB5 520 aa23.47■■□□□ 1.35
SHROOM1-202ENST00000378676 KCNB2Q92953 911 aa23.47■■□□□ 1.35
SHROOM1-202ENST00000378676 FAM227BQ96M60 508 aa23.47■■□□□ 1.35
SHROOM1-202ENST00000378676 SIL1Q9H173 461 aa23.47■■□□□ 1.35
SHROOM1-202ENST00000378676 CNPY2Q9Y2B0 182 aa23.47■■□□□ 1.35
SHROOM1-202ENST00000378676 NPHP3Q7Z494 1330 aa23.47■■□□□ 1.35
SHROOM1-202ENST00000378676 SYT1P21579 422 aa23.47■■□□□ 1.35
SHROOM1-202ENST00000378676 RNF214Q8ND24 703 aa23.47■■□□□ 1.35
SHROOM1-202ENST00000378676 DDX54Q8TDD1 881 aaKnown RBP23.47■■□□□ 1.35
SHROOM1-202ENST00000378676 SLC52A2Q9HAB3 445 aa23.47■■□□□ 1.35
SHROOM1-202ENST00000378676 G3BP1Q13283 466 aaKnown RBP eCLIP23.46■■□□□ 1.35
SHROOM1-202ENST00000378676 RIC3Q7Z5B4 369 aa23.46■■□□□ 1.35
SHROOM1-202ENST00000378676 NMIQ13287 307 aaPredicted RBP23.45■■□□□ 1.35
SHROOM1-202ENST00000378676 CCDC83Q8IWF9 413 aa23.45■■□□□ 1.35
SHROOM1-202ENST00000378676 TMEM87AQ8NBN3 555 aa23.45■■□□□ 1.35
SHROOM1-202ENST00000378676 STX6O43752 255 aa23.45■■□□□ 1.34
SHROOM1-202ENST00000378676 ST3GAL1Q11201 340 aa23.45■■□□□ 1.34
SHROOM1-202ENST00000378676 NECTIN1Q15223 517 aa23.45■■□□□ 1.34
SHROOM1-202ENST00000378676 EPHA10Q5JZY3 1008 aa23.45■■□□□ 1.34
Retrieved 100 of 20,778 RNA–protein pairs in 18.7 ms