RNA–Protein interactions for RNA: ENST00000378026.4

CKAP4-201, Transcript of cytoskeleton associated protein 4, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CKAP4, Length 3,093 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CKAP4-201ENST00000378026 PI4K2BQ8TCG2 481 aa18.85■□□□□ 0.61
CKAP4-201ENST00000378026 EDC4Q6P2E9 1401 aaKnown RBP18.85■□□□□ 0.61
CKAP4-201ENST00000378026 SLFN14P0C7P3 912 aa18.85■□□□□ 0.61
CKAP4-201ENST00000378026 RHPN1Q8TCX5 695 aa18.85■□□□□ 0.61
CKAP4-201ENST00000378026 KCNJ4P48050 445 aa18.85■□□□□ 0.61
CKAP4-201ENST00000378026 ST3GAL1Q11201 340 aa18.85■□□□□ 0.61
CKAP4-201ENST00000378026 COL9A3Q14050 684 aaPredicted RBP18.85■□□□□ 0.61
CKAP4-201ENST00000378026 CEP135Q66GS9 1140 aa18.85■□□□□ 0.61
CKAP4-201ENST00000378026 USP44Q9H0E7 712 aa18.85■□□□□ 0.61
CKAP4-201ENST00000378026 TRMT1Q9NXH9 659 aaKnown RBP18.85■□□□□ 0.61
CKAP4-201ENST00000378026 USP27XA6NNY8 438 aa18.84■□□□□ 0.61
CKAP4-201ENST00000378026 IL17RAQ96F46 866 aa18.84■□□□□ 0.61
CKAP4-201ENST00000378026 ZNF165P49910 485 aa18.84■□□□□ 0.61
CKAP4-201ENST00000378026 KIF18AQ8NI77 898 aa18.84■□□□□ 0.61
CKAP4-201ENST00000378026 CYP46A1Q9Y6A2 500 aa18.84■□□□□ 0.61
CKAP4-201ENST00000378026 AATKQ6ZMQ8 1374 aa18.84■□□□□ 0.61
CKAP4-201ENST00000378026 SRGAP3O43295 1099 aa18.83■□□□□ 0.61
CKAP4-201ENST00000378026 SOS1Q07889 1333 aaPredicted RBP18.83■□□□□ 0.61
CKAP4-201ENST00000378026 STK3Q13188 491 aa18.83■□□□□ 0.6
CKAP4-201ENST00000378026 OS9Q13438 667 aaPredicted RBP18.83■□□□□ 0.6
CKAP4-201ENST00000378026 BICD2Q8TD16 824 aa18.83■□□□□ 0.6
CKAP4-201ENST00000378026 TMEM51Q9NW97 253 aa18.83■□□□□ 0.6
CKAP4-201ENST00000378026 ZNF215Q9UL58 517 aaPredicted RBP18.83■□□□□ 0.6
CKAP4-201ENST00000378026 ATP7BP35670 1465 aa18.83■□□□□ 0.6
CKAP4-201ENST00000378026 CPS1P31327 1500 aa18.83■□□□□ 0.6
CKAP4-201ENST00000378026 MYO5BQ9ULV0 1848 aa18.83■□□□□ 0.6
CKAP4-201ENST00000378026 SPATA32Q96LK8 384 aa18.82■□□□□ 0.6
CKAP4-201ENST00000378026 ST7Q9NRC1 585 aa18.82■□□□□ 0.6
CKAP4-201ENST00000378026 CRB1P82279 1406 aa18.82■□□□□ 0.6
CKAP4-201ENST00000378026 PAXBP1Q9Y5B6 917 aa18.82■□□□□ 0.6
CKAP4-201ENST00000378026 GABPB1Q06547 395 aaPredicted RBP18.82■□□□□ 0.6
CKAP4-201ENST00000378026 TPCN1Q9ULQ1 816 aa18.82■□□□□ 0.6
CKAP4-201ENST00000378026 CLTCQ00610 1675 aaKnown RBP18.81■□□□□ 0.6
CKAP4-201ENST00000378026 NR1I2O75469 434 aa18.81■□□□□ 0.6
CKAP4-201ENST00000378026 KMT5BQ4FZB7 885 aa18.81■□□□□ 0.6
CKAP4-201ENST00000378026 A0A087WWV3 80 aa18.81■□□□□ 0.6
CKAP4-201ENST00000378026 CCDC30Q5VVM6 783 aa18.81■□□□□ 0.6
CKAP4-201ENST00000378026 FILIP1Q7Z7B0 1213 aa18.81■□□□□ 0.6
CKAP4-201ENST00000378026 PLA2G4DQ86XP0 818 aa18.8■□□□□ 0.6
CKAP4-201ENST00000378026 FBXW7Q969H0 707 aa18.8■□□□□ 0.6
CKAP4-201ENST00000378026 PHAXQ9H814 394 aaKnown RBP18.8■□□□□ 0.6
CKAP4-201ENST00000378026 CCDC61Q9Y6R9 512 aa18.8■□□□□ 0.6
CKAP4-201ENST00000378026 CEBPZQ03701 1054 aaKnown RBP18.8■□□□□ 0.6
CKAP4-201ENST00000378026 TERF2Q15554 542 aa18.8■□□□□ 0.6
CKAP4-201ENST00000378026 VPS53Q5VIR6 699 aa18.8■□□□□ 0.6
CKAP4-201ENST00000378026 KRT222Q8N1A0 295 aa18.8■□□□□ 0.6
CKAP4-201ENST00000378026 SYTL4Q96C24 671 aaPredicted RBP18.8■□□□□ 0.6
CKAP4-201ENST00000378026 MORC2Q9Y6X9 1032 aaPredicted RBP18.8■□□□□ 0.6
CKAP4-201ENST00000378026 RAB11FIP3O75154 756 aa18.79■□□□□ 0.6
CKAP4-201ENST00000378026 CDK11BP21127 795 aaKnown RBP18.79■□□□□ 0.6
CKAP4-201ENST00000378026 ELF2Q15723 593 aa18.79■□□□□ 0.6
CKAP4-201ENST00000378026 ALKQ9UM73 1620 aa18.79■□□□□ 0.6
CKAP4-201ENST00000378026 MAP3K19Q56UN5 1328 aa18.79■□□□□ 0.6
CKAP4-201ENST00000378026 TAF3Q5VWG9 929 aa18.79■□□□□ 0.6
CKAP4-201ENST00000378026 SSH3Q8TE77 659 aa18.79■□□□□ 0.6
CKAP4-201ENST00000378026 ZSCAN31Q96LW9 406 aaPredicted RBP18.79■□□□□ 0.6
CKAP4-201ENST00000378026 TRERF1Q96PN7 1200 aa18.79■□□□□ 0.6
CKAP4-201ENST00000378026 SH2B1Q9NRF2 756 aaPredicted RBP18.78■□□□□ 0.6
CKAP4-201ENST00000378026 NPM1P06748 294 aaKnown RBP eCLIP18.78■□□□□ 0.6
CKAP4-201ENST00000378026 PTPN14Q15678 1187 aa18.78■□□□□ 0.6
CKAP4-201ENST00000378026 LARP1Q6PKG0 1096 aaKnown RBP18.78■□□□□ 0.6
CKAP4-201ENST00000378026 AOX1Q06278 1338 aa18.78■□□□□ 0.6
CKAP4-201ENST00000378026 SYCP1Q15431 976 aa18.77■□□□□ 0.6
CKAP4-201ENST00000378026 KIF1BPQ96EK5 621 aa18.77■□□□□ 0.6
CKAP4-201ENST00000378026 DDX11Q96FC9 970 aa18.77■□□□□ 0.6
CKAP4-201ENST00000378026 USP16Q9Y5T5 823 aa18.77■□□□□ 0.6
CKAP4-201ENST00000378026 GOLGA6L19H0YKK7 550 aa18.77■□□□□ 0.6
CKAP4-201ENST00000378026 NBPF7P0C2Y1 421 aaPredicted RBP18.77■□□□□ 0.6
CKAP4-201ENST00000378026 EIF2S2P20042 333 aaKnown RBP18.77■□□□□ 0.6
CKAP4-201ENST00000378026 FBXO38Q6PIJ6 1188 aa18.77■□□□□ 0.6
CKAP4-201ENST00000378026 EPB41L2O43491 1005 aaKnown RBP18.77■□□□□ 0.59
CKAP4-201ENST00000378026 ZKSCAN1P17029 563 aaPredicted RBP18.77■□□□□ 0.59
CKAP4-201ENST00000378026 ZSWIM6Q9HCJ5 1215 aa18.77■□□□□ 0.59
CKAP4-201ENST00000378026 SKILP12757 684 aa18.76■□□□□ 0.59
CKAP4-201ENST00000378026 FOSBP53539 338 aa18.76■□□□□ 0.59
CKAP4-201ENST00000378026 LRRC8AQ8IWT6 810 aa18.76■□□□□ 0.59
CKAP4-201ENST00000378026 ZNF397Q8NF99 534 aaPredicted RBP18.76■□□□□ 0.59
CKAP4-201ENST00000378026 LEO1Q8WVC0 666 aaPredicted RBP18.76■□□□□ 0.59
CKAP4-201ENST00000378026 TDRD7Q8NHU6 1098 aaKnown RBP18.76■□□□□ 0.59
CKAP4-201ENST00000378026 MLH3Q9UHC1 1453 aa18.76■□□□□ 0.59
CKAP4-201ENST00000378026 CLSTN2Q9H4D0 955 aa18.75■□□□□ 0.59
CKAP4-201ENST00000378026 RUFY2Q8WXA3 655 aa18.75■□□□□ 0.59
CKAP4-201ENST00000378026 DDX19AQ9NUU7 478 aaKnown RBP18.75■□□□□ 0.59
CKAP4-201ENST00000378026 RBM8AQ9Y5S9 174 aaKnown RBP18.75■□□□□ 0.59
CKAP4-201ENST00000378026 PGBD1Q96JS3 809 aa18.75■□□□□ 0.59
CKAP4-201ENST00000378026 TUBGCP6Q96RT7 1819 aa18.74■□□□□ 0.59
CKAP4-201ENST00000378026 FAM227BQ96M60 508 aa18.74■□□□□ 0.59
CKAP4-201ENST00000378026 SCAND2PQ9GZW5 306 aaPredicted RBP18.74■□□□□ 0.59
CKAP4-201ENST00000378026 C11orf57Q6ZUT1 292 aaPredicted RBP18.74■□□□□ 0.59
CKAP4-201ENST00000378026 IRX5P78411 483 aaPredicted RBP18.73■□□□□ 0.59
CKAP4-201ENST00000378026 CREB3L3Q68CJ9 461 aa18.73■□□□□ 0.59
CKAP4-201ENST00000378026 ARHGAP30Q7Z6I6 1101 aaPredicted RBP18.73■□□□□ 0.59
CKAP4-201ENST00000378026 ERCC4Q92889 916 aaPredicted RBP18.73■□□□□ 0.59
CKAP4-201ENST00000378026 TAF6LQ9Y6J9 622 aa18.73■□□□□ 0.59
CKAP4-201ENST00000378026 NPHP3Q7Z494 1330 aa18.73■□□□□ 0.59
CKAP4-201ENST00000378026 RBM6P78332 1123 aaKnown RBP18.72■□□□□ 0.59
CKAP4-201ENST00000378026 HDGFL1Q5TGJ6 251 aa18.72■□□□□ 0.59
CKAP4-201ENST00000378026 PPP6R1Q9UPN7 881 aa18.72■□□□□ 0.59
CKAP4-201ENST00000378026 CCDC66A2RUB6 948 aa18.72■□□□□ 0.59
CKAP4-201ENST00000378026 CCDC69A6NI79 296 aa18.72■□□□□ 0.59
Retrieved 100 of 20,778 RNA–protein pairs in 20.9 ms