RNA–Protein interactions for RNA: ENST00000368671.3

CLRN3-201, Transcript of clarin 3, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CLRN3, Length 1,152 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLRN3-201ENST00000368671 KDM2BQ8NHM5 1336 aa13.88□□□□□ -0.19
CLRN3-201ENST00000368671 TIAM2Q8IVF5 1701 aa13.87□□□□□ -0.19
CLRN3-201ENST00000368671 ANKRD31Q8N7Z5 1873 aa13.87□□□□□ -0.19
CLRN3-201ENST00000368671 APLP1P51693 650 aa13.87□□□□□ -0.19
CLRN3-201ENST00000368671 EIF5P55010 431 aaKnown RBP13.87□□□□□ -0.19
CLRN3-201ENST00000368671 WDR90Q96KV7 1748 aa13.87□□□□□ -0.19
CLRN3-201ENST00000368671 TBC1D9BQ66K14 1250 aa13.86□□□□□ -0.19
CLRN3-201ENST00000368671 PHACTR3Q96KR7 559 aa13.86□□□□□ -0.19
CLRN3-201ENST00000368671 FMNL2Q96PY5 1086 aa13.86□□□□□ -0.19
CLRN3-201ENST00000368671 TEX13AQ9BXU3 409 aaPredicted RBP13.86□□□□□ -0.19
CLRN3-201ENST00000368671 RSPH6AQ9H0K4 717 aa13.86□□□□□ -0.19
CLRN3-201ENST00000368671 RRAGCQ9HB90 399 aa13.86□□□□□ -0.19
CLRN3-201ENST00000368671 TBC1D2BQ9UPU7 963 aa13.86□□□□□ -0.19
CLRN3-201ENST00000368671 CCDC88AQ3V6T2 1871 aa13.86□□□□□ -0.19
CLRN3-201ENST00000368671 BCORQ6W2J9 1755 aa13.86□□□□□ -0.19
CLRN3-201ENST00000368671 COL11A2P13942 1736 aaPredicted RBP13.85□□□□□ -0.19
CLRN3-201ENST00000368671 BTBD11A6QL63 1104 aa13.85□□□□□ -0.19
CLRN3-201ENST00000368671 H0YIN7 160 aa13.85□□□□□ -0.19
CLRN3-201ENST00000368671 KCNQ3O43525 872 aa13.85□□□□□ -0.19
CLRN3-201ENST00000368671 CCDC24Q8N4L8 307 aa13.85□□□□□ -0.19
CLRN3-201ENST00000368671 TTLL6Q8N841 843 aa13.85□□□□□ -0.19
CLRN3-201ENST00000368671 RBM46Q8TBY0 533 aaKnown RBP13.85□□□□□ -0.19
CLRN3-201ENST00000368671 NUDCQ9Y266 331 aa13.85□□□□□ -0.19
CLRN3-201ENST00000368671 CACNA1SQ13698 1873 aa13.84□□□□□ -0.19
CLRN3-201ENST00000368671 CEMIPQ8WUJ3 1361 aa13.84□□□□□ -0.19
CLRN3-201ENST00000368671 A1BGP04217 495 aa13.84□□□□□ -0.19
CLRN3-201ENST00000368671 IL6STP40189 918 aaPredicted RBP13.84□□□□□ -0.19
CLRN3-201ENST00000368671 IFFO2Q5TF58 517 aa13.84□□□□□ -0.19
CLRN3-201ENST00000368671 NPM2Q86SE8 214 aaKnown RBP13.84□□□□□ -0.19
CLRN3-201ENST00000368671 SPOCK2Q92563 424 aa13.84□□□□□ -0.19
CLRN3-201ENST00000368671 ZNF622Q969S3 477 aaKnown RBP eCLIP13.84□□□□□ -0.19
CLRN3-201ENST00000368671 U2AF1L5P0DN76 240 aaPredicted RBP13.83□□□□□ -0.2
CLRN3-201ENST00000368671 LMNB1P20700 586 aa13.83□□□□□ -0.2
CLRN3-201ENST00000368671 PRELPP51888 382 aa13.83□□□□□ -0.2
CLRN3-201ENST00000368671 U2AF1Q01081 240 aaKnown RBP eCLIP13.83□□□□□ -0.2
CLRN3-201ENST00000368671 TSPYL2Q9H2G4 693 aaPredicted RBP13.83□□□□□ -0.2
CLRN3-201ENST00000368671 NPHP1O15259 732 aa13.82□□□□□ -0.2
CLRN3-201ENST00000368671 PPP2R1AP30153 589 aa13.82□□□□□ -0.2
CLRN3-201ENST00000368671 PIP4K2AP48426 406 aaPredicted RBP13.82□□□□□ -0.2
CLRN3-201ENST00000368671 PRR5LQ6MZQ0 368 aa13.82□□□□□ -0.2
CLRN3-201ENST00000368671 MCM10Q7L590 875 aa13.82□□□□□ -0.2
CLRN3-201ENST00000368671 RTF1Q92541 710 aaKnown RBP13.82□□□□□ -0.2
CLRN3-201ENST00000368671 FAM212AQ96EL1 285 aa13.82□□□□□ -0.2
CLRN3-201ENST00000368671 PRAMEF22A3QJZ6 481 aa13.81□□□□□ -0.2
CLRN3-201ENST00000368671 CAMTA2O94983 1202 aa13.81□□□□□ -0.2
CLRN3-201ENST00000368671 PDE6BP35913 854 aa13.81□□□□□ -0.2
CLRN3-201ENST00000368671 HTRA3P83110 453 aa13.81□□□□□ -0.2
CLRN3-201ENST00000368671 FSTL1Q12841 308 aa13.81□□□□□ -0.2
CLRN3-201ENST00000368671 DZIP3Q86Y13 1208 aaKnown RBP13.81□□□□□ -0.2
CLRN3-201ENST00000368671 BRIP1Q9BX63 1249 aa13.81□□□□□ -0.2
CLRN3-201ENST00000368671 USP16Q9Y5T5 823 aa13.81□□□□□ -0.2
CLRN3-201ENST00000368671 NFKBIEO00221 500 aa13.8□□□□□ -0.2
CLRN3-201ENST00000368671 C21orf2O43822 256 aa13.8□□□□□ -0.2
CLRN3-201ENST00000368671 CLCN6P51797 869 aa13.8□□□□□ -0.2
CLRN3-201ENST00000368671 DCTN1Q14203 1278 aa13.8□□□□□ -0.2
CLRN3-201ENST00000368671 SETDB2Q96T68 719 aa13.8□□□□□ -0.2
CLRN3-201ENST00000368671 ZC3H4Q9UPT8 1303 aaKnown RBP13.8□□□□□ -0.2
CLRN3-201ENST00000368671 ARFGEF2Q9Y6D5 1785 aa13.79□□□□□ -0.2
CLRN3-201ENST00000368671 FER1L6Q2WGJ9 1857 aa13.79□□□□□ -0.2
CLRN3-201ENST00000368671 GLTPD2A6NH11 291 aa13.79□□□□□ -0.2
CLRN3-201ENST00000368671 ST5P78524 1137 aa13.79□□□□□ -0.2
CLRN3-201ENST00000368671 DNAJC5GQ8N7S2 189 aa13.79□□□□□ -0.2
CLRN3-201ENST00000368671 CNBD1Q8NA66 436 aa13.79□□□□□ -0.2
CLRN3-201ENST00000368671 PDZRN3Q9UPQ7 1066 aa13.79□□□□□ -0.2
CLRN3-201ENST00000368671 SMC1BQ8NDV3 1235 aa13.78□□□□□ -0.2
CLRN3-201ENST00000368671 PHF12Q96QT6 1004 aa13.78□□□□□ -0.2
CLRN3-201ENST00000368671 LAMB4A4D0S4 1761 aa13.78□□□□□ -0.2
CLRN3-201ENST00000368671 SLX4Q8IY92 1834 aa13.78□□□□□ -0.2
CLRN3-201ENST00000368671 DLG5Q8TDM6 1919 aa13.78□□□□□ -0.2
CLRN3-201ENST00000368671 DICER1Q9UPY3 1922 aaKnown RBP13.78□□□□□ -0.2
CLRN3-201ENST00000368671 SNRPA1P09661 255 aaKnown RBP13.77□□□□□ -0.21
CLRN3-201ENST00000368671 GABBR2O75899 941 aa13.76□□□□□ -0.21
CLRN3-201ENST00000368671 VEGFAP15692 232 aaPredicted RBP13.76□□□□□ -0.21
CLRN3-201ENST00000368671 HTATSF1O43719 755 aaKnown RBP13.75□□□□□ -0.21
CLRN3-201ENST00000368671 SRGNP10124 158 aa13.75□□□□□ -0.21
CLRN3-201ENST00000368671 ERFEQ4G0M1 354 aa13.75□□□□□ -0.21
CLRN3-201ENST00000368671 STYK1Q6J9G0 422 aa13.75□□□□□ -0.21
CLRN3-201ENST00000368671 DPY19L2Q6NUT2 758 aa13.75□□□□□ -0.21
CLRN3-201ENST00000368671 NBPF5PQ86XG9 351 aaPredicted RBP13.75□□□□□ -0.21
CLRN3-201ENST00000368671 CNKSR1Q969H4 720 aa13.75□□□□□ -0.21
CLRN3-201ENST00000368671 KLRG1Q96E93 195 aa13.75□□□□□ -0.21
CLRN3-201ENST00000368671 MASTLQ96GX5 879 aa13.75□□□□□ -0.21
CLRN3-201ENST00000368671 TAOK3Q9H2K8 898 aa13.75□□□□□ -0.21
CLRN3-201ENST00000368671 ZNF652Q9Y2D9 606 aa13.75□□□□□ -0.21
CLRN3-201ENST00000368671 KDM3BQ7LBC6 1761 aa13.75□□□□□ -0.21
CLRN3-201ENST00000368671 FAM177BA6PVY3 158 aa13.74□□□□□ -0.21
CLRN3-201ENST00000368671 NBPF26B4DH59 902 aa13.74□□□□□ -0.21
CLRN3-201ENST00000368671 NEFMP07197 916 aa13.74□□□□□ -0.21
CLRN3-201ENST00000368671 PRPF40BQ6NWY9 871 aaKnown RBP13.74□□□□□ -0.21
CLRN3-201ENST00000368671 NBPF10Q6P3W6 841 aaKnown RBP13.74□□□□□ -0.21
CLRN3-201ENST00000368671 NBPF15Q8N660 670 aa13.74□□□□□ -0.21
CLRN3-201ENST00000368671 MIS18AQ9NYP9 233 aa13.74□□□□□ -0.21
CLRN3-201ENST00000368671 TAF7Q15545 349 aaPredicted RBP13.73□□□□□ -0.21
CLRN3-201ENST00000368671 CLEC4GQ6UXB4 293 aa13.73□□□□□ -0.21
CLRN3-201ENST00000368671 NIP7Q9Y221 180 aaKnown RBP eCLIP13.73□□□□□ -0.21
CLRN3-201ENST00000368671 LTBP3Q9NS15 1303 aa13.72□□□□□ -0.21
CLRN3-201ENST00000368671 CEP350Q5VT06 3117 aa13.72□□□□□ -0.21
CLRN3-201ENST00000368671 POTECB2RU33 542 aa13.72□□□□□ -0.21
CLRN3-201ENST00000368671 NGEFQ8N5V2 710 aa13.72□□□□□ -0.21
CLRN3-201ENST00000368671 GSE1Q14687 1217 aa13.71□□□□□ -0.21
Retrieved 100 of 20,778 RNA–protein pairs in 10.8 ms