RNA–Protein interactions for RNA: ENST00000358808.6

CLIP1-202, Transcript of CAP-Gly domain containing linker protein 1, humanhuman

APPRIS P4 TSL 1 (best) BASIC

Gene CLIP1, Length 5,880 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLIP1-202ENST00000358808 MAP9Q49MG5 647 aa11.77□□□□□ -0.52
CLIP1-202ENST00000358808 PKNOX2Q96KN3 472 aa11.77□□□□□ -0.52
CLIP1-202ENST00000358808 CFAP74Q9C0B2 1584 aa11.77□□□□□ -0.52
CLIP1-202ENST00000358808 KIF5CO60282 957 aa11.77□□□□□ -0.53
CLIP1-202ENST00000358808 APBB1IPQ7Z5R6 666 aaPredicted RBP11.77□□□□□ -0.53
CLIP1-202ENST00000358808 UTP14AQ9BVJ6 771 aaKnown RBP11.77□□□□□ -0.53
CLIP1-202ENST00000358808 SYNCQ9H7C4 482 aa11.77□□□□□ -0.53
CLIP1-202ENST00000358808 TNRQ92752 1358 aa11.77□□□□□ -0.53
CLIP1-202ENST00000358808 SPECC1Q5M775 1068 aa11.77□□□□□ -0.53
CLIP1-202ENST00000358808 TCERG1LQ5VWI1 586 aa11.77□□□□□ -0.53
CLIP1-202ENST00000358808 UBXN4Q92575 508 aa11.77□□□□□ -0.53
CLIP1-202ENST00000358808 CLEC11AQ9Y240 323 aa11.77□□□□□ -0.53
CLIP1-202ENST00000358808 AKAP2Q9Y2D5 859 aa11.77□□□□□ -0.53
CLIP1-202ENST00000358808 IKBKGQ9Y6K9 419 aa11.77□□□□□ -0.53
CLIP1-202ENST00000358808 BCAR3O75815 825 aa11.77□□□□□ -0.53
CLIP1-202ENST00000358808 SLU7O95391 586 aaKnown RBP11.77□□□□□ -0.53
CLIP1-202ENST00000358808 SREK1Q8WXA9 508 aaKnown RBP11.77□□□□□ -0.53
CLIP1-202ENST00000358808 FAM135AQ9P2D6 1515 aa11.77□□□□□ -0.53
CLIP1-202ENST00000358808 GPATCH8Q9UKJ3 1502 aaKnown RBP11.76□□□□□ -0.53
CLIP1-202ENST00000358808 SH3BP5O60239 455 aa11.76□□□□□ -0.53
CLIP1-202ENST00000358808 USO1O60763 962 aaKnown RBP11.76□□□□□ -0.53
CLIP1-202ENST00000358808 NBPF1Q3BBV0 1214 aa11.76□□□□□ -0.53
CLIP1-202ENST00000358808 TIGD1Q96MW7 591 aa11.76□□□□□ -0.53
CLIP1-202ENST00000358808 PHAXQ9H814 394 aaKnown RBP11.76□□□□□ -0.53
CLIP1-202ENST00000358808 CCDC175P0C221 793 aa11.76□□□□□ -0.53
CLIP1-202ENST00000358808 CEBPAP49715 358 aaPredicted RBP11.76□□□□□ -0.53
CLIP1-202ENST00000358808 C6orf163Q5TEZ5 329 aa11.76□□□□□ -0.53
CLIP1-202ENST00000358808 NUP88Q99567 741 aaPredicted RBP11.76□□□□□ -0.53
CLIP1-202ENST00000358808 NAPBQ9H115 298 aa11.76□□□□□ -0.53
CLIP1-202ENST00000358808 CAMK4Q16566 473 aa11.76□□□□□ -0.53
CLIP1-202ENST00000358808 ABCC10Q5T3U5 1492 aa11.76□□□□□ -0.53
CLIP1-202ENST00000358808 BRD4O60885 1362 aaPredicted RBP11.76□□□□□ -0.53
CLIP1-202ENST00000358808 NLRP5P59047 1200 aa11.76□□□□□ -0.53
CLIP1-202ENST00000358808 NUDT16Q96DE0 195 aaKnown RBP11.76□□□□□ -0.53
CLIP1-202ENST00000358808 TTC21AQ8NDW8 1320 aa11.76□□□□□ -0.53
CLIP1-202ENST00000358808 ATAD2Q6PL18 1390 aa11.76□□□□□ -0.53
CLIP1-202ENST00000358808 CCDC194A0A1B0GVG4 234 aa11.76□□□□□ -0.53
CLIP1-202ENST00000358808 PAFAH1B1P43034 410 aa11.76□□□□□ -0.53
CLIP1-202ENST00000358808 ATF7IPQ6VMQ6 1270 aa11.75□□□□□ -0.53
CLIP1-202ENST00000358808 CABP5Q9NP86 173 aa11.75□□□□□ -0.53
CLIP1-202ENST00000358808 C6orf229H3BNL8 230 aa11.75□□□□□ -0.53
CLIP1-202ENST00000358808 CCDC40Q4G0X9 1142 aa11.75□□□□□ -0.53
CLIP1-202ENST00000358808 STXBP4Q6ZWJ1 553 aa11.75□□□□□ -0.53
CLIP1-202ENST00000358808 MMRN2Q9H8L6 949 aa11.75□□□□□ -0.53
CLIP1-202ENST00000358808 IL1RAPL2Q9NP60 686 aa11.75□□□□□ -0.53
CLIP1-202ENST00000358808 SYCP2Q9BX26 1530 aa11.75□□□□□ -0.53
CLIP1-202ENST00000358808 KIF4BQ2VIQ3 1234 aa11.75□□□□□ -0.53
CLIP1-202ENST00000358808 TSR2Q969E8 191 aaKnown RBP11.75□□□□□ -0.53
CLIP1-202ENST00000358808 A2MP01023 1474 aa11.75□□□□□ -0.53
CLIP1-202ENST00000358808 CASTP20810 708 aaKnown RBP11.75□□□□□ -0.53
CLIP1-202ENST00000358808 MCM3P25205 808 aa11.75□□□□□ -0.53
CLIP1-202ENST00000358808 HLTFQ14527 1009 aaKnown RBP eCLIP11.75□□□□□ -0.53
CLIP1-202ENST00000358808 TMX1Q9H3N1 280 aa11.75□□□□□ -0.53
CLIP1-202ENST00000358808 DISP1Q96F81 1524 aa11.75□□□□□ -0.53
CLIP1-202ENST00000358808 DUOX2Q9NRD8 1548 aa11.75□□□□□ -0.53
CLIP1-202ENST00000358808 UQCRHLA0A096LP55 91 aa11.75□□□□□ -0.53
CLIP1-202ENST00000358808 K7ELQ4 463 aaPredicted RBP11.75□□□□□ -0.53
CLIP1-202ENST00000358808 UQCRHP07919 91 aa11.75□□□□□ -0.53
CLIP1-202ENST00000358808 CCDC82Q8N4S0 544 aa11.75□□□□□ -0.53
CLIP1-202ENST00000358808 ZSCAN12O43309 604 aa11.74□□□□□ -0.53
CLIP1-202ENST00000358808 MYO1BO43795 1136 aa11.74□□□□□ -0.53
CLIP1-202ENST00000358808 RFX1P22670 979 aa11.74□□□□□ -0.53
CLIP1-202ENST00000358808 CCDC174Q6PII3 467 aa11.74□□□□□ -0.53
CLIP1-202ENST00000358808 CKAP2LQ8IYA6 745 aa11.74□□□□□ -0.53
CLIP1-202ENST00000358808 CCDC196A0A1B0GTZ2 297 aa11.74□□□□□ -0.53
CLIP1-202ENST00000358808 GNAT3A8MTJ3 354 aa11.74□□□□□ -0.53
CLIP1-202ENST00000358808 SLC5A1P13866 664 aa11.74□□□□□ -0.53
CLIP1-202ENST00000358808 TAF12Q16514 161 aa11.74□□□□□ -0.53
CLIP1-202ENST00000358808 IQCA1Q86XH1 822 aa11.74□□□□□ -0.53
CLIP1-202ENST00000358808 KDM5BQ9UGL1 1544 aa11.74□□□□□ -0.53
CLIP1-202ENST00000358808 MTIF2P46199 727 aaKnown RBP11.74□□□□□ -0.53
CLIP1-202ENST00000358808 MAP3K12Q12852 859 aa11.73□□□□□ -0.53
CLIP1-202ENST00000358808 NUTM1Q86Y26 1132 aa11.73□□□□□ -0.53
CLIP1-202ENST00000358808 ZNF622Q969S3 477 aaKnown RBP eCLIP11.73□□□□□ -0.531e-6■■□□□ 14.2
CLIP1-202ENST00000358808 CALML4Q96GE6 196 aa11.73□□□□□ -0.53
CLIP1-202ENST00000358808 ALS2CR12Q96Q35 445 aa11.73□□□□□ -0.53
CLIP1-202ENST00000358808 BACH2Q9BYV9 841 aa11.73□□□□□ -0.53
CLIP1-202ENST00000358808 SLC12A7Q9Y666 1083 aa11.73□□□□□ -0.53
CLIP1-202ENST00000358808 U3KPZ7 1027 aaPredicted RBP11.73□□□□□ -0.53
CLIP1-202ENST00000358808 A0A087WZG4 1122 aa11.73□□□□□ -0.53
CLIP1-202ENST00000358808 PTCD1O75127 700 aaKnown RBP11.73□□□□□ -0.53
CLIP1-202ENST00000358808 YEATS4O95619 227 aa11.73□□□□□ -0.53
CLIP1-202ENST00000358808 MICALCLQ6ZW33 695 aa11.73□□□□□ -0.53
CLIP1-202ENST00000358808 CPLX3Q8WVH0 158 aa11.73□□□□□ -0.53
CLIP1-202ENST00000358808 VAT1LQ9HCJ6 419 aa11.73□□□□□ -0.53
CLIP1-202ENST00000358808 NOP2P46087 812 aaKnown RBP11.73□□□□□ -0.53
CLIP1-202ENST00000358808 SSRP1Q08945 709 aaKnown RBP11.73□□□□□ -0.53
CLIP1-202ENST00000358808 MAP3K11Q16584 847 aa11.73□□□□□ -0.53
CLIP1-202ENST00000358808 ECM2O94769 699 aaPredicted RBP11.73□□□□□ -0.53
CLIP1-202ENST00000358808 PSMC4P43686 418 aa11.72□□□□□ -0.53
CLIP1-202ENST00000358808 MAPK8IP2Q13387 824 aaPredicted RBP11.72□□□□□ -0.53
CLIP1-202ENST00000358808 TOP1P11387 765 aaKnown RBP11.72□□□□□ -0.53
CLIP1-202ENST00000358808 MXRA7P84157 204 aa11.72□□□□□ -0.53
CLIP1-202ENST00000358808 SFPQP23246 707 aaKnown RBP eCLIP11.72□□□□□ -0.53
CLIP1-202ENST00000358808 NAA15Q9BXJ9 866 aaKnown RBP11.72□□□□□ -0.53
CLIP1-202ENST00000358808 LRPPRCP42704 1394 aaKnown RBP11.72□□□□□ -0.53
CLIP1-202ENST00000358808 MAATS1Q7Z4T9 603 aa11.71□□□□□ -0.53
CLIP1-202ENST00000358808 A0A1W2PRG0 241 aa11.71□□□□□ -0.53
CLIP1-202ENST00000358808 STX6O43752 255 aa11.71□□□□□ -0.53
CLIP1-202ENST00000358808 SLC4A8Q2Y0W8 1093 aa11.71□□□□□ -0.53
Retrieved 100 of 20,778 RNA–protein pairs in 13.3 ms