RNA–Protein interactions for RNA: ENST00000357857.14

CLN3-204, Transcript of CLN3, battenin, humanhuman

TSL 2 BASIC

Gene CLN3, Length 1,720 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-204ENST00000357857 COL5A3P25940 1745 aaPredicted RBP23.41■■□□□ 1.34
CLN3-204ENST00000357857 PTF1AQ7RTS3 328 aa23.41■■□□□ 1.34
CLN3-204ENST00000357857 RREB1Q92766 1687 aa23.41■■□□□ 1.34
CLN3-204ENST00000357857 CWF19L2Q2TBE0 894 aaKnown RBP23.4■■□□□ 1.34
CLN3-204ENST00000357857 MYD88Q99836 296 aa23.4■■□□□ 1.34
CLN3-204ENST00000357857 IBTKQ9P2D0 1353 aaPredicted RBP23.4■■□□□ 1.34
CLN3-204ENST00000357857 KRT27Q7Z3Y8 459 aa23.39■■□□□ 1.34
CLN3-204ENST00000357857 SMC5Q8IY18 1101 aa23.39■■□□□ 1.34
CLN3-204ENST00000357857 IGKV5-2P06315 115 aa23.39■■□□□ 1.33
CLN3-204ENST00000357857 ITPK1Q13572 414 aa23.39■■□□□ 1.33
CLN3-204ENST00000357857 ZBTB1Q9Y2K1 713 aa23.39■■□□□ 1.33
CLN3-204ENST00000357857 ZNF330Q9Y3S2 320 aaPredicted RBP23.39■■□□□ 1.33
CLN3-204ENST00000357857 SKAP1Q86WV1 359 aa23.38■■□□□ 1.33
CLN3-204ENST00000357857 C9orf78Q9NZ63 289 aaPredicted RBP23.38■■□□□ 1.33
CLN3-204ENST00000357857 LRRFIP2Q9Y608 721 aaKnown RBP23.38■■□□□ 1.33
CLN3-204ENST00000357857 NEURL1BA8MQ27 555 aa23.37■■□□□ 1.33
CLN3-204ENST00000357857 MYH14Q7Z406 1995 aaKnown RBP23.37■■□□□ 1.33
CLN3-204ENST00000357857 LY75O60449 1722 aa23.37■■□□□ 1.33
CLN3-204ENST00000357857 NBPF7P0C2Y1 421 aaPredicted RBP23.36■■□□□ 1.33
CLN3-204ENST00000357857 KIF6Q6ZMV9 814 aa23.36■■□□□ 1.33
CLN3-204ENST00000357857 GCC1Q96CN9 775 aa23.36■■□□□ 1.33
CLN3-204ENST00000357857 CCDC87Q9NVE4 849 aa23.36■■□□□ 1.33
CLN3-204ENST00000357857 PDZRN3Q9UPQ7 1066 aa23.36■■□□□ 1.33
CLN3-204ENST00000357857 IL6STP40189 918 aaPredicted RBP23.36■■□□□ 1.33
CLN3-204ENST00000357857 FAM196AQ6ZSG2 479 aa23.36■■□□□ 1.33
CLN3-204ENST00000357857 ZBTB3Q9H5J0 574 aa23.36■■□□□ 1.33
CLN3-204ENST00000357857 GRM8O00222 908 aa23.35■■□□□ 1.33
CLN3-204ENST00000357857 HMMRO75330 724 aa23.35■■□□□ 1.33
CLN3-204ENST00000357857 CRKLP46109 303 aaKnown RBP23.35■■□□□ 1.33
CLN3-204ENST00000357857 UTYO14607 1347 aa23.34■■□□□ 1.33
CLN3-204ENST00000357857 INTS5Q6P9B9 1019 aaKnown RBP23.34■■□□□ 1.33
CLN3-204ENST00000357857 HDAC5Q9UQL6 1122 aa23.34■■□□□ 1.33
CLN3-204ENST00000357857 RXRBP28702 533 aa23.33■■□□□ 1.33
CLN3-204ENST00000357857 GCKRQ14397 625 aa23.33■■□□□ 1.33
CLN3-204ENST00000357857 BCL11BQ9C0K0 894 aaPredicted RBP23.33■■□□□ 1.33
CLN3-204ENST00000357857 ATP8B2P98198 1209 aa23.33■■□□□ 1.32
CLN3-204ENST00000357857 NPM2Q86SE8 214 aaKnown RBP23.33■■□□□ 1.32
CLN3-204ENST00000357857 MAP3K15Q6ZN16 1313 aa23.32■■□□□ 1.32
CLN3-204ENST00000357857 ATP5J2-PTCD1G3V325 749 aa23.32■■□□□ 1.32
CLN3-204ENST00000357857 DCTPP1Q9H773 170 aa23.32■■□□□ 1.32
CLN3-204ENST00000357857 ANKRD36CQ5JPF3 1778 aa23.31■■□□□ 1.32
CLN3-204ENST00000357857 RGS3P49796 1198 aa23.31■■□□□ 1.32
CLN3-204ENST00000357857 NUP98P52948 1817 aa23.31■■□□□ 1.32
CLN3-204ENST00000357857 TAF1LQ8IZX4 1826 aa23.31■■□□□ 1.32
CLN3-204ENST00000357857 EIF5P55010 431 aaKnown RBP23.3■■□□□ 1.32
CLN3-204ENST00000357857 LINC00116Q8NCU8 138 aa23.3■■□□□ 1.32
CLN3-204ENST00000357857 ARXQ96QS3 562 aa23.3■■□□□ 1.32
CLN3-204ENST00000357857 NUCB1Q02818 461 aa23.3■■□□□ 1.32
CLN3-204ENST00000357857 RGS17Q9UGC6 210 aaPredicted RBP23.29■■□□□ 1.32
CLN3-204ENST00000357857 PNMA6EA0A0J9YXQ4 647 aa23.28■■□□□ 1.32
CLN3-204ENST00000357857 TCIRG1Q13488 830 aa23.28■■□□□ 1.32
CLN3-204ENST00000357857 DZIP3Q86Y13 1208 aaKnown RBP23.28■■□□□ 1.32
CLN3-204ENST00000357857 CCNL1Q9UK58 526 aaPredicted RBP23.28■■□□□ 1.32
CLN3-204ENST00000357857 CCDC191Q8NCU4 936 aa23.28■■□□□ 1.32
CLN3-204ENST00000357857 SUCLG2Q96I99 432 aa23.28■■□□□ 1.32
CLN3-204ENST00000357857 CWC25Q9NXE8 425 aaPredicted RBP23.28■■□□□ 1.32
CLN3-204ENST00000357857 CNTNAP4Q9C0A0 1308 aa23.27■■□□□ 1.32
CLN3-204ENST00000357857 KCNQ4P56696 695 aa23.27■■□□□ 1.32
CLN3-204ENST00000357857 ANKRD45Q5TZF3 282 aa23.27■■□□□ 1.32
CLN3-204ENST00000357857 GIGYF2Q6Y7W6 1299 aaKnown RBP23.27■■□□□ 1.32
CLN3-204ENST00000357857 PPP1R42Q7Z4L9 355 aa23.27■■□□□ 1.32
CLN3-204ENST00000357857 ISCA1Q9BUE6 129 aa23.27■■□□□ 1.32
CLN3-204ENST00000357857 A0A087WZG4 1122 aa23.26■■□□□ 1.31
CLN3-204ENST00000357857 ERVV-1B6SEH8 477 aa23.26■■□□□ 1.31
CLN3-204ENST00000357857 HSP90AB3PQ58FF7 597 aa23.26■■□□□ 1.31
CLN3-204ENST00000357857 ILDR2Q71H61 639 aa23.26■■□□□ 1.31
CLN3-204ENST00000357857 CHD1LQ86WJ1 897 aa23.26■■□□□ 1.31
CLN3-204ENST00000357857 SSH3Q8TE77 659 aa23.26■■□□□ 1.31
CLN3-204ENST00000357857 TBC1D2BQ9UPU7 963 aa23.25■■□□□ 1.31
CLN3-204ENST00000357857 TRIM37O94972 964 aa23.25■■□□□ 1.31
CLN3-204ENST00000357857 TRIM28Q13263 835 aaKnown RBP23.25■■□□□ 1.31
CLN3-204ENST00000357857 MTX1Q13505 466 aa23.25■■□□□ 1.31
CLN3-204ENST00000357857 POLA2Q14181 598 aa23.25■■□□□ 1.31
CLN3-204ENST00000357857 HLFQ16534 295 aa23.25■■□□□ 1.31
CLN3-204ENST00000357857 RC3H1Q5TC82 1133 aaKnown RBP23.25■■□□□ 1.31
CLN3-204ENST00000357857 UBE3BQ7Z3V4 1068 aa23.25■■□□□ 1.31
CLN3-204ENST00000357857 SRGAP3O43295 1099 aa23.24■■□□□ 1.31
CLN3-204ENST00000357857 POTEAQ6S8J7 498 aa23.24■■□□□ 1.31
CLN3-204ENST00000357857 KAZALD1Q96I82 304 aa23.24■■□□□ 1.31
CLN3-204ENST00000357857 LNPKQ9C0E8 428 aa23.24■■□□□ 1.31
CLN3-204ENST00000357857 COL15A1P39059 1388 aa23.23■■□□□ 1.31
CLN3-204ENST00000357857 BCORQ6W2J9 1755 aa23.23■■□□□ 1.31
CLN3-204ENST00000357857 H7C1W4 665 aa23.23■■□□□ 1.31
CLN3-204ENST00000357857 BICC1Q9H694 974 aaKnown RBP23.23■■□□□ 1.31
CLN3-204ENST00000357857 PDE4AP27815 886 aa23.22■■□□□ 1.31
CLN3-204ENST00000357857 CASP7P55210 303 aa23.22■■□□□ 1.31
CLN3-204ENST00000357857 JARID2Q92833 1246 aaPredicted RBP23.22■■□□□ 1.31
CLN3-204ENST00000357857 ZBTB47Q9UFB7 747 aaPredicted RBP23.22■■□□□ 1.31
CLN3-204ENST00000357857 C4BP0C0L5 1744 aa23.21■■□□□ 1.31
CLN3-204ENST00000357857 EXOC6BQ9Y2D4 811 aa23.2■■□□□ 1.3
CLN3-204ENST00000357857 CAMTA2O94983 1202 aa23.19■■□□□ 1.3
CLN3-204ENST00000357857 EPHA10Q5JZY3 1008 aa23.19■■□□□ 1.3
CLN3-204ENST00000357857 TSHZ2Q9NRE2 1034 aa23.19■■□□□ 1.3
CLN3-204ENST00000357857 APBB1O00213 710 aa23.18■■□□□ 1.3
CLN3-204ENST00000357857 RPS6KA4O75676 772 aa23.18■■□□□ 1.3
CLN3-204ENST00000357857 GPTP24298 496 aa23.18■■□□□ 1.3
CLN3-204ENST00000357857 NLRP10Q86W26 655 aa23.18■■□□□ 1.3
CLN3-204ENST00000357857 SCN7AQ01118 1682 aa23.17■■□□□ 1.3
CLN3-204ENST00000357857 GNPATO15228 680 aa23.16■■□□□ 1.3
CLN3-204ENST00000357857 SURF6O75683 361 aaKnown RBP23.16■■□□□ 1.3
Retrieved 100 of 20,778 RNA–protein pairs in 67.6 ms